passing parameters

[vollmersj]

Is the best way to pass parameter to use name tupleNamedTuple such as

(;  social_distiance= (;lockdown_lift=Date("2020-06-01")) )

[vollmersj]

@ChrisRackauckas How can we make this compatible with the parameter framework in modelling toolkit

[ChrisRackauckas]

What's your entry point here?

[vollmersj]

We are currently in the process of translating the code but we want to make sure it is compatible with ModelingToolkit.jl - a simple modelingtoolkitize does not seem to work see issue 2 . Also the way we pass parameters around should be compatible as we might want change which parameters we learn and which we seta priori

[ChrisRackauckas]

Can I see a start to finish example of what you're trying to do? I still don't understand the entry point because the package module is empty and the tests aren't calling the package.

[vollmersj]

The start to finish example would be

1. exposing the forward model through ModellingToolkit (notice the paramDict in python is quite involved )
2. using existing fitting functionality but also translate the weak fitting based on Bayesian Optimisation

Use the performance gain to run the model not just as ode but also as GillespieProblem as per DiffEq

The reason we made it into package it is easier to use Travis and namespace is cleaner

Difficulty in the above are three
1.make it plug and play form start - we want to refine the model e.g. heterogenous spreaders and regional model
2. we choose to go for 121 translation first but want to make 1) from the start currently there is one big RHS - so it would be good to break it up using connections in modelling toolkit

hope this answers the question

[ChrisRackauckas]

I'm just trying to find out how to run it to diagnose it. It seems like:

https://github.com/vollmersj/coexist.jl/blob/master/test/runtests.jl

that's all join calling Python? So is the Julia code called anywhere yet?

[vollmersj]

We have written this up. There are lot of policy functions such as how tests are distributed that might change and get different parameters. We have posted the question on discourse

discourse