refpackages.bib

@Manual{R-astsa,
  title = {astsa: Applied Statistical Time Series Analysis},
  author = {David Stoffer},
  year = {2025},
  note = {R package version 2.3},
  url = {https://dsstoffer.github.io/},
}

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2025},
  url = {https://www.R-project.org/},
}

@Manual{R-caret,
  title = {caret: Classification and Regression Training},
  author = {Max Kuhn},
  year = {2024},
  note = {R package version 7.0-1},
  url = {https://github.com/topepo/caret/},
}

@Manual{R-downlit,
  title = {downlit: Syntax Highlighting and Automatic Linking},
  author = {Hadley Wickham},
  year = {2024},
  note = {R package version 0.4.4},
  url = {https://downlit.r-lib.org/},
}

@Manual{R-dplR,
  title = {dplR: Dendrochronology Program Library in R},
  author = {Andy Bunn and Mikko Korpela and Franco Biondi and Filipe Campelo and Stefan Klesse and Pierre Mérian and Fares Qeadan and Christian Zang},
  year = {2025},
  note = {R package version 1.7.8},
  url = {https://github.com/OpenDendro/dplR},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
  year = {2023},
  note = {R package version 1.1.4},
  url = {https://dplyr.tidyverse.org},
}

@Manual{R-dynlm,
  title = {dynlm: Dynamic Linear Regression},
  author = {Achim Zeileis},
  year = {2019},
  note = {R package version 0.3-6},
  url = {https://CRAN.R-project.org/package=dynlm},
  doi = {10.32614/CRAN.package.dynlm},
}

@Manual{R-Ecdat,
  title = {Ecdat: Data Sets for Econometrics},
  author = {Yves Croissant and Spencer Graves},
  year = {2025},
  note = {R package version 0.4.7},
  url = {https://www.r-project.org},
}

@Manual{R-fable,
  title = {fable: Forecasting Models for Tidy Time Series},
  author = {Mitchell O'Hara-Wild and Rob Hyndman and Earo Wang},
  year = {2024},
  note = {R package version 0.4.1},
  url = {https://fable.tidyverts.org},
}

@Manual{R-fGarch,
  title = {fGarch: Rmetrics - Autoregressive Conditional Heteroskedastic Modelling},
  author = {Diethelm Wuertz and Yohan Chalabi and Tobias Setz and Martin Maechler and Georgi N. Boshnakov},
  year = {2024},
  note = {R package version 4033.92},
  url = {https://geobosh.github.io/fGarchDoc/},
}

@Manual{R-FinTS,
  title = {FinTS: Companion to Tsay (2005) Analysis of Financial Time Series},
  author = {Spencer Graves},
  year = {2024},
  note = {R package version 0.4-9},
  url = {https://geobosh.github.io/FinTSDoc/},
}

@Manual{R-fma,
  title = {fma: Data Sets from "Forecasting: Methods and Applications" by
Makridakis, Wheelwright \& Hyndman (1998)},
  author = {Rob Hyndman},
  year = {2023},
  note = {R package version 2.5},
  url = {https://pkg.robjhyndman.com/fma/},
}

@Manual{R-forecast,
  title = {forecast: Forecasting Functions for Time Series and Linear Models},
  author = {Rob Hyndman and George Athanasopoulos and Christoph Bergmeir and Gabriel Caceres and Leanne Chhay and Kirill Kuroptev and Mitchell O'Hara-Wild and Fotios Petropoulos and Slava Razbash and Earo Wang and Farah Yasmeen},
  year = {2025},
  note = {R package version 8.24.0},
  url = {https://pkg.robjhyndman.com/forecast/},
}

@Manual{R-funtimes,
  title = {funtimes: Functions for Time Series Analysis},
  author = {Vyacheslav Lyubchich and Yulia R. Gel and Srishti Vishwakarma},
  year = {2023},
  note = {R package version 9.1},
  url = {https://CRAN.R-project.org/package=funtimes},
  doi = {10.32614/CRAN.package.funtimes},
}

@Manual{R-gamlss,
  title = {gamlss: Generalized Additive Models for Location Scale and Shape},
  author = {Mikis Stasinopoulos and Robert Rigby},
  year = {2025},
  note = {R package version 5.5-0},
  url = {https://www.gamlss.com/},
}

@Manual{R-gamlss.ggplots,
  title = {gamlss.ggplots: Plotting Functions for Generalized Additive Model for Location
Scale and Shape},
  author = {Mikis Stasinopoulos and Robert Rigby and Fernanda {De Bastiani}},
  year = {2024},
  note = {R package version 2.1-12},
  url = {https://www.gamlss.com/},
}

@Manual{R-gamlss.util,
  title = {gamlss.util: GAMLSS Utilities},
  author = {Mikis Stasinopoulos and Bob Rigby and Paul Eilers},
  year = {2016},
  note = {R package version 4.3-4},
  url = {http://www.gamlss.org/},
}

@Manual{R-GGally,
  title = {GGally: Extension to ggplot2},
  author = {Barret Schloerke and Di Cook and Joseph Larmarange and Francois Briatte and Moritz Marbach and Edwin Thoen and Amos Elberg and Jason Crowley},
  year = {2025},
  note = {R package version 2.4.0},
  url = {https://ggobi.github.io/ggally/},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington and Teun {van den Brand}},
  year = {2025},
  note = {R package version 4.0.0},
  url = {https://ggplot2.tidyverse.org},
}

@Manual{R-ggpubr,
  title = {ggpubr: ggplot2 Based Publication Ready Plots},
  author = {Alboukadel Kassambara},
  year = {2025},
  note = {R package version 0.6.1},
  url = {https://rpkgs.datanovia.com/ggpubr/},
}

@Manual{R-ggtime,
  title = {ggtime: Grammar of Graphics and Plot Helpers for Time Series
Visualization},
  author = {Mitchell O'Hara-Wild and Cynthia A. Huang and Matthew Kay and Rob Hyndman},
  year = {2025},
  note = {R package version 0.1.0},
  url = {https://CRAN.R-project.org/package=ggtime},
  doi = {10.32614/CRAN.package.ggtime},
}

@Manual{R-Kendall,
  title = {Kendall: Kendall Rank Correlation and Mann-Kendall Trend Test},
  author = {A.I. McLeod},
  year = {2022},
  note = {R package version 2.2.1},
  url = {http://www.stats.uwo.ca/faculty/aim},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2025},
  note = {R package version 1.50},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lawstat,
  title = {lawstat: Tools for Biostatistics, Public Policy, and Law},
  author = {Joseph L. Gastwirth and Yulia R. Gel and W. L. Wallace Hui and Vyacheslav Lyubchich and Weiwen Miao and Kimihiro Noguchi},
  year = {2023},
  note = {R package version 3.6},
  url = {https://CRAN.R-project.org/package=lawstat},
  doi = {10.32614/CRAN.package.lawstat},
}

@Manual{R-lmtest,
  title = {lmtest: Testing Linear Regression Models},
  author = {Torsten Hothorn and Achim Zeileis and Richard W. Farebrother and Clint Cummins},
  year = {2022},
  note = {R package version 0.9-40},
  url = {https://CRAN.R-project.org/package=lmtest},
  doi = {10.32614/CRAN.package.lmtest},
}

@Manual{R-lomb,
  title = {lomb: Lomb-Scargle Periodogram},
  author = {Thomas Ruf},
  year = {2024},
  note = {R package version 2.5.0},
  url = {https://CRAN.R-project.org/package=lomb},
  doi = {10.32614/CRAN.package.lomb},
}

@Manual{R-mgcv,
  title = {mgcv: Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation},
  author = {Simon Wood},
  year = {2025},
  note = {R package version 1.9-3},
  url = {https://CRAN.R-project.org/package=mgcv},
  doi = {10.32614/CRAN.package.mgcv},
}

@Manual{R-mgcViz,
  title = {mgcViz: Visualisations for Generalized Additive Models},
  author = {Matteo Fasiolo and Raphael Nedellec},
  year = {2025},
  note = {R package version 0.2.1},
  url = {https://github.com/mfasiolo/mgcViz},
}

@Manual{R-nlme,
  title = {nlme: Linear and Nonlinear Mixed Effects Models},
  author = {José Pinheiro and Douglas Bates and {R Core Team}},
  year = {2025},
  note = {R package version 3.1-168},
  url = {https://svn.r-project.org/R-packages/trunk/nlme/},
}

@Manual{R-oce,
  title = {oce: Analysis of Oceanographic Data},
  author = {Dan Kelley and Clark Richards},
  year = {2024},
  note = {R package version 1.8-3},
  url = {https://dankelley.github.io/oce/},
}

@Manual{R-patchwork,
  title = {patchwork: The Composer of Plots},
  author = {Thomas Lin Pedersen},
  year = {2025},
  note = {R package version 1.3.2},
  url = {https://patchwork.data-imaginist.com},
}

@Manual{R-plotly,
  title = {plotly: Create Interactive Web Graphics via plotly.js},
  author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
  year = {2025},
  note = {R package version 4.11.0},
  url = {https://plotly-r.com},
}

@Manual{R-pracma,
  title = {pracma: Practical Numerical Math Functions},
  author = {Hans W. Borchers},
  year = {2023},
  note = {R package version 2.4.4},
  url = {https://CRAN.R-project.org/package=pracma},
  doi = {10.32614/CRAN.package.pracma},
}

@Manual{R-randtests,
  title = {randtests: Testing Randomness in R},
  author = {Frederico Caeiro and Ayana Mateus},
  year = {2024},
  note = {R package version 1.0.2},
  url = {https://CRAN.R-project.org/package=randtests},
  doi = {10.32614/CRAN.package.randtests},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
  year = {2024},
  note = {R package version 2.1.5},
  url = {https://readr.tidyverse.org},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2025},
  note = {R package version 2.30},
  url = {https://github.com/rstudio/rmarkdown},
}

@Manual{R-signal,
  title = {signal: Signal Processing},
  author = {Uwe Ligges and Tom Short and Paul Kienzle},
  year = {2024},
  note = {R package version 1.8-1},
  url = {https://signal.R-forge.R-project.org},
}

@Manual{R-tseries,
  title = {tseries: Time Series Analysis and Computational Finance},
  author = {Adrian Trapletti and Kurt Hornik},
  year = {2024},
  note = {R package version 0.10-58},
  url = {https://CRAN.R-project.org/package=tseries},
  doi = {10.32614/CRAN.package.tseries},
}

@Manual{R-TSstudio,
  title = {TSstudio: Functions for Time Series Analysis and Forecasting},
  author = {Rami Krispin},
  year = {2023},
  note = {R package version 0.1.7},
  url = {https://github.com/RamiKrispin/TSstudio},
}

@Manual{R-urca,
  title = {urca: Unit Root and Cointegration Tests for Time Series Data},
  author = {Bernhard Pfaff},
  year = {2024},
  note = {R package version 1.3-4},
  url = {https://CRAN.R-project.org/package=urca},
  doi = {10.32614/CRAN.package.urca},
}

@Manual{R-xml2,
  title = {xml2: Parse XML},
  author = {Hadley Wickham and Jim Hester and Jeroen Ooms},
  year = {2025},
  note = {R package version 1.4.0},
  url = {https://xml2.r-lib.org},
}

@Article{caret2008,
  title = {Building Predictive Models in R Using the caret Package},
  volume = {28},
  url = {https://www.jstatsoft.org/index.php/jss/article/view/v028i05},
  doi = {10.18637/jss.v028.i05},
  number = {5},
  journal = {Journal of Statistical Software},
  author = {{Kuhn} and {Max}},
  year = {2008},
  pages = {1–26},
}

@Article{Bunn2008115,
  title = {A dendrochronology program library in R (dplR)},
  journal = {Dendrochronologia},
  volume = {26},
  number = {2},
  pages = {115--124},
  year = {2008},
  issn = {1125-7865},
  doi = {10.1016/j.dendro.2008.01.002},
  author = {Andrew G. Bunn},
  keywords = {statistical software, R, detrending, chronology},
}

@Article{Bunn2010251,
  title = {Statistical and visual crossdating in R using the dplR library},
  journal = {Dendrochronologia},
  volume = {28},
  number = {4},
  pages = {251--258},
  year = {2010},
  issn = {1125-7865},
  doi = {10.1016/j.dendro.2009.12.001},
  author = {Andrew G. Bunn},
  keywords = {statistical software, moving correlation, cross-correlation, skeleton plot, COFECHA},
}

@Book{fma1998,
  title = {Forecasting: methods and applications},
  author = {Spyros Makridakis and Steve Wheelwright and Rob J Hyndman},
  year = {1998},
  publisher = {John Wiley \& Sons},
}

@Article{forecast2008,
  title = {Automatic time series forecasting: the forecast package for {R}},
  author = {Rob J Hyndman and Yeasmin Khandakar},
  journal = {Journal of Statistical Software},
  volume = {27},
  number = {3},
  pages = {1--22},
  year = {2008},
  doi = {10.18637/jss.v027.i03},
}

@Article{gamlss2005,
  title = {Generalized additive models for location, scale and shape,(with discussion)},
  journal = {Applied Statistics},
  volume = {54},
  part = {3},
  pages = {507-554},
  year = {2005},
  author = {{R. A. Rigby} and {D. M. Stasinopoulos}},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
}

@Article{lmtest2002,
  title = {Diagnostic Checking in Regression Relationships},
  author = {Achim Zeileis and Torsten Hothorn},
  journal = {R News},
  year = {2002},
  volume = {2},
  number = {3},
  pages = {7--10},
  url = {https://CRAN.R-project.org/doc/Rnews/},
}

@Article{lomb1999,
  title = {The Lomb-Scargle Periodogram in Biological Rhythm Research: Analysis of Incomplete and Unequally Spaced Time-Series},
  author = {T. Ruf},
  journal = {Biological Rhythm Research},
  year = {1999},
  volume = {30},
  pages = {178-201},
}

@Article{mgcv2011,
  title = {Fast stable restricted maximum likelihood and marginal 
likelihood estimation of semiparametric generalized linear models},
  journal = {Journal of the Royal Statistical Society (B)},
  volume = {73},
  number = {1},
  pages = {3--36},
  year = {2011},
  author = {S. N. Wood},
  doi = {10.1111/j.1467-9868.2010.00749.x},
}

@Article{mgcv2016,
  title = {Smoothing parameter and model selection for general smooth models (with discussion)},
  author = {S. N. Wood and N. Pya and B. S{\"a}fken},
  journal = {Journal of the American Statistical Association},
  year = {2016},
  pages = {1548--1575},
  volume = {111},
  doi = {10.1080/01621459.2016.1180986},
}

@Article{mgcv2004,
  title = {Stable and efficient multiple smoothing parameter estimation for 
         generalized additive models},
  journal = {Journal of the American Statistical Association},
  volume = {99},
  number = {467},
  pages = {673--686},
  year = {2004},
  author = {S. N. Wood},
  doi = {10.1198/016214504000000980},
}

@Book{mgcv2017,
  title = {Generalized {A}dditive {M}odels: An Introduction with {R}},
  year = {2017},
  author = {S. N. Wood},
  edition = {2},
  publisher = {Chapman and Hall/CRC},
}

@Article{mgcv2003,
  title = {Thin-plate regression splines},
  journal = {Journal of the Royal Statistical Society (B)},
  volume = {65},
  number = {1},
  pages = {95--114},
  year = {2003},
  author = {S. N. Wood},
  doi = {10.1111/1467-9868.00374},
}

@Article{mgcViz2020,
  title = {Scalable visualisation methods for modern Generalized Additive Models.},
  journal = {Journal of the Royal Statistical Society (B)},
  volume = {29},
  number = {1},
  pages = {78-86},
  year = {2020},
  author = {{Fasiolo} and {Matteo} and {Nedellec} and {Rapha{"e}l} and {Goude} and {Yannig} and {Wood} and Simon N},
}

@Book{nlme2000,
  title = {Mixed-Effects Models in S and S-PLUS},
  author = {José C. Pinheiro and Douglas M. Bates},
  year = {2000},
  publisher = {Springer},
  address = {New York},
  doi = {10.1007/b98882},
}

@Book{plotly2020,
  author = {Carson Sievert},
  title = {Interactive Web-Based Data Visualization with R, plotly, and shiny},
  publisher = {Chapman and Hall/CRC},
  year = {2020},
  isbn = {9781138331457},
  url = {https://plotly-r.com},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  isbn = {9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  isbn = {9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Manual{signal2023,
  title = {{signal}: Signal processing},
  author = {{signal developers}},
  year = {2023},
  url = {https://r-forge.r-project.org/projects/signal/},
}

@Book{urca2008,
  title = {Analysis of Integrated and Cointegrated Time Series with R},
  author = {B. Pfaff},
  publisher = {Springer},
  edition = {Second},
  address = {New York},
  year = {2008},
  note = {ISBN 0-387-27960-1},
  url = {https://www.pfaffikus.de},
}