Tutorial 6: Incorrect prediction label ("Cell sentence") #23
Description
Hi there,
I'm following the steps in Tutorial 6, but I'm getting an unexpected output for the prediction label.
Expected Behavior:
I expected to see a correct prediction label, such as B cell.
Actual Behavior:
The output is consistently "Cell sentence".
Code to Reproduce:
Here is the code I am using:
`for model_pred, gt_label in zip(predicted_cell_types[::5], arrow_ds["celltype"][::5]):
# C2S might predict a period at the end of the cell type, which we remove
if model_pred[-1] == ".":
model_pred = model_pred[:-1]
print("Predicted label: {}\nGround truth label: {}\n".format(model_pred, gt_label))`
`Predicted label: Cell sentence: S100A9 S100A8 STFA1 GM42418 CSTDC5 CSTDC4 STFA2 AY036118 STFA2L1 RETNLG STFA3 ACTB TMSB4X S100A6 NGP LCN2 S100A11 CMSS1 CSTA3 PGLYRP1 MALAT1 CSTA2 MMP8 LYZ2 CAMP TYROBP SRGN HMGB2 MIR142HG CD44 MCTP1 OLFM4 HBB-BS CD24A CD52 PBX1 H3F3B HBA-A1 SYNE1 ARHGDIB GSR UBB TALDO1 MYH9 RPS8 TMCC1 CMIP LGALS3 TNRC6B HDC RPLP1 CORO1A RPS24 CDK8 GPSM3 LARS2 LMTK2 H3F3A ASPRV1 CCL6 MSRA LTF SLC2A3 CD84 DHRS7 GAPDH RBM47 ANXA1 PTMA PAG1 KLF13 BTG1 CYBA RPS9 RPSA TNFAIP8 IQGAP1 IQSEC1 BTG2 EMP3 LITAF EEF1A1 THBS1 RPS20 EVI2 INPP4B MAP3K5 HBA-A2 CD9 GMFG ANXA2 RPL9 ARHGAP15 TPT1 RAP1GAP2 NCF2 UBE2H FCER1G ARPC2 RPS11 SORL1 COX5B HBB-BT ABCA13 ELOB ATP6V1E1 VSIR FTH1 RPL23 RASSF3 FAU RPL13A FNIP1 FAM49B LCP1 LY6C2 WFDC21 ARHGEF1 MXD1 MMP9 RPS27A RPS4X RPS13 NUMB PRR13 KLF2 TCF20 MIRT1 PPP3CA RPL8 LMO4 GABARAP PFDN5 MYL6 RAP1B DCTN4 CHP1 RPS21 RPS16 TRP53INP1 EIF1 RPL17 IFITM6 CAPZB PCBP2 ARHGAP24 ARPC5 ACTG1 PFN1 PRDX5 BIRC3 STK10 ITM2B NCF1 CD37 CFL1 NEAT1 RPS12 R3HDM4 MCTP2 GM26740 RPS2 LY6G ELMO1 RPS3 CD33 IFITM3 RPL6 MYL12B RFLNB ZC3H7A RPS10 DSTN IFITM2 OGT ATPIF1 DACH1 NADK CEP120 SKAP2 XDH NCOR1 ACTR3 LAPTM5 1700123O20RIK CPEB2 LEPROTL1 RPS18 NDUFB10 UCP2 NDUFA4 GM44503 DDX5 MAPKAPK2 DOCK11.
Cell sentence: S100A9 S100A8 STFA1 GM42418 CSTDC5 CSTDC4 STFA2 AY036118 STFA2L1 RETNLG STFA3 ACTB TMSB4X S100A6 NGP LCN2 S100A11 CMSS1 CSTA3 PGLYRP1 MALAT1 CSTA2 MMP8 LYZ2 CAMP TYROBP SRGN HMGB2 MIR142HG CD44 MCTP1 OLFM4 HBB-BT ABCA13 ELOB ATP6V1E1 VSIR FTH1 RPL23 RASSF3 FAU RPL13A FNIP1 FAM49B LCP1 LY6C2 WFDC21 ARHGEF1 MXD1 MMP9 RPS27A RPS4X RPS13 NUMB PRR13 KLF2 TCF20 MIRT1 PPP3CA RPL8 LMO4 GABARAP PFDN5 MYL6 RAP1B DCTN4 CHP1 RPS21 RPS16 TRP53INP1 EIF1 RPL17 IFITM6 CAPZB PCBP2 ARHGAP24 ARPC5 ACTG1 PFN1 PRDX5 BIRC3 STK10 ITM2B NCF1 CD37 CFL1 NEAT1 RPS12 R3HDM4 MCTP2 GM26740 RPS2 LY6G ELMO1 RPS3 CD33 IFITM3 RPL6 MYL12B RFLNB ZC3H7A RPS10 DSTN IFITM2 OGT ATPIF1 DACH1 NADK CEP120 SKAP
Ground truth label: mNPs
Predicted label: Cell sentence: GM42418 AY036118 CMSS1 ACTB EEF1A1 PTMA RPS20 FOXP1 RPS12 TMSB4X AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF1 RPL13 AFF3 EBF
Ground truth label: Large Pre-B cells
Predicted label: Cell sentence: GM42418 AY036118 EBF1 FOXP1 ACTB PTMA RPS12 ARID1B MALAT1 RPS8 RPL28 RPS5 RPS24 MT-CO1 RPS23 RPS26 RPL23 AFF3 FAU HBA-A1 RPS27 AFF1 RPL39 RACK1 RPL41 FOXN3 EEF1A1 RPL36A RPL36 MT-CYTB MSI2 BACH2 RPL13 SYK GM20388 RPS21 CSTDC5 RPL6 MAML2 RPL32 CECR2 RPS9 HBA-A2 RPSA RPL37 RPL37A HNRNPA3 ATP5H LYN 2610307P16RIK RPLP2 RPL23 RPL24 PPP2R5C PLCG2 RPL30 MT-ND1 RPL8 RPS15 MYL6 GPATCH8 PIK3CD H13 GM26740 CD79A RPL11 FGFR2 CYFIP2 ITCH S100A9 VPREB3 EIF2S2 DCAF5 MARC2 HBB-BS RPL7 PREP BTBD9 RPS11 UBA52 CALM1 RPL18 TLE4 TMSB10 RPS14 TMSB4X CERK HDAC8 HSP90AB1 UNC93B1 UCP2 WDFY4 NCOA2 RPS10 YWHAZ GFRA1 ELMO1 H2AFV RPL29 RPL17 SCAF11 TUT4 SLC25A5 BLNK RHOH ZC3H7A NDUFA7 RPS25 CSTDC4 RPL27 AFF1 RPL36 AFF1 RPL36A HNRNPA3 ATP5H LYN 2610307P16RIK RPLP2 RPL23 RPL24 PPP2R5C PLCG2 RPL30 MT-ND1 RPL8 RPS15 MYL6 GPATCH8 PIK3CD H13 GM26740 CD79A RPL11 FGFR2 CYFIP2 ITCH S100A9 VPREB3 EIF2S2 DCAF5 MARC2 HBB-BS RPL7 PREP BTBD9 RPS11 UBA52 CALM1 RPL18 TLE4 TMSB10 RPS14 TMSB4X CERK HDAC8 HSP90AB1 UNC93B1 UCP2 WDFY4 NCOA2 RPS10 YWHAZ GFRA1 ELMO1 H2AFV RPL29 RPL17 SCAF11 TUT4 SLC25A5 BLNK RHOH ZC3H7A NDUFA7 RPS25 CSTDC4 RPL27 AFF1 RPL36 AFF1 RPL36A HNRNPA3 ATP5H LYN 2610307P16RIK RPLP2 RPL23 RPL24 PPP2R5C PLCG2 RPL30 MT-ND1 RPL8 RPS15 MYL6 GPATCH8 PIK3CD H13 GM26740 CD79A RPL11 FGFR2 CYFIP2 ITCH S100A9 VPREB3 EIF2S2 DCAF5 MARC2 HBB-BS RPL7 PREP BTBD9 RPS11 UBA52 CALM1 RPL18 TLE4 TMSB10 RPS14 TMSB4X CERK HDAC8 HSP90AB1 UNC93B1 UCP2 WDFY4 NCOA2 RPS10 YWHAZ GFRA1 ELMO1 H2AFV RPL29 RPL17 SCAF11 TUT4 SLC25A5 BLNK RHOH ZC3H7A NDUFA7 RPS25 CSTDC4 RPL27 AFF1 RPL36 AFF1 RPL36A HNRNPA3 ATP5H LYN 2610307P16RIK RPLP2 RPL23 RPL24 PPP2R5C PLCG2 RPL30 MT-ND1 RPL8 RPS15 MYL6 GPATCH8 PIK3CD H13 GM26740 CD79A RPL11 FGFR2 CYFIP2 ITCH S100A9 VPREB3 EIF2S2 DCAF5 MARC2 HBB-BS RPL7 PREP BTBD9 RPS11 UBA52 CALM1 RPL18 TLE4 TMSB10 RPS14 TMSB4X CERK HDAC8 HSP90AB1 UNC93B1 UCP2 WDFY4 NCOA2 RPS10 YWHAZ GFRA1 ELMO1 H2AF
Ground truth label: Small Pre-B cells`