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Preface

dedicated to my one and only brain cell. Kudos.

  • got some questions?
    • yeah, I also joined a computational lab with no prior experiences in coding
    • yeah, the learning process was super miserable at the beginning
    • yeah, nothing makes sense
    • yeah, you might pick up (arguably) bad habits because you spend a month debugging code
    • yeah, I cried too cry all the time
    • no, it doesn't get better. You just get stronger :-)

the objective here .... and stuff

:::{admonition} If you're new here :class: sidebar note

  • skim through the quickstart section for a general overview of:
    • quick & dirty introduction to our "lab equipment/research tools"
    • general information on supercomputer access (and how to be nice / not waste resources)
    • guide to help setup computer for research
      • command-line : typing commands vs. clicking with mouse
      • coding with Python : downloading/managing, general use
    • introduction to chemical structure file formats: PDBs, XYZs, and others
  • Ask questions when you're confused !!!
    • anyone in the lab will be able to answer or guide you to the answer
    • Google will not be helpful
  • stay hydrated !!! might cry
  • Repeat Step 1. but read it this time, because you were too shy to ask questions :::

For Richard:

  1. find stuff I did and totally forgotten
  2. command-line things I picked up over the years
  3. compiling programs/software notes
  4. Simulation: Theory, Methods, Approaches

For you (probably):

  1. a place to start (Google sucks when you don't know what to Google)
  2. resources/guide to the world of computational chemistry
  3. notes from our programming session (I probably didn't explain something)
  4. explains (maybe) the coding workflow I developed over the Ph.D.

helpful links ... and stuff

more stuff (I keep losing)