CodingNotes/_toc.yml at main · van-richard/CodingNotes · GitHub

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root: index
defaults:
  numbered: true
subtrees:
- entries:
  - file: notebooks/00-quickstart/00_overview
    subtrees:
    - entries:
      - glob: "notebooks/00-quickstart/0*"
  - file: notebooks/01-commandline/toc
    subtrees:
    - entries:
      - file: notebooks/01-commandline/bash/bash.md
        entries:
        - glob: "notebooks/01-commandline/bash/bash-*"
      - file: notebooks/01-commandline/vim/vi
        entries:
        - glob: "notebooks/01-commandline/vim/vi-*"
      - file: notebooks/01-commandline/git/git
        entries:
        - glob: "notebooks/01-commandline/git/git-*"
      - file: notebooks/commands/toc
        entries:
        - glob: "notebooks/01-commandline/linux-*"
  - file: notebooks/02-hpc/toc
    subtrees:
    - entries:
      - file: notebooks/02-hpc/ssh
        entries:
        - glob: "notebooks/02-hpc/ssh-*"
      - file: notebooks/02-hpc/module
        entries:
        - glob: "notebooks/02-hpc/module-*"
      - file: notebooks/02-hpc/slurm
        entries:
        - glob: "notebooks/02-hpc/slurm-*"
  - file: notebooks/03-python/toc
    subtrees:
    - entries:
      - glob: "notebooks/03-python/python-*"
  - file: notebooks/04-simulation/toc
    subtrees:
    - entries:
      - file: notebooks/04-simulation/theory
        entries:
        - glob: "notebooks/04-simulation/theory-*"
      - file: notebooks/04-simulation/tutorial.md
        entries:
        - file: notebooks/04-simulation/simple
        - file: notebooks/04-simulation/distance
        - file: notebooks/04-simulation/claisen
      - file: notebooks/04-simulation/analysis
        entries:
        - glob: "notebooks/04-simulation/tools/*"
  - file: notebooks/morenotes
    subtrees:
    - entries:
      - file: notebooks/04-simulation/amber
        entries:
        - glob: "notebooks/04-simulation/amber-install-*"
      - file: notebooks/cuda.ipynb
      - file: notebooks/softwares/apptainer/apptainer
        entries:
        - file: notebooks/softwares/apptainer/app-build
        - file: notebooks/softwares/apptainer/app-run
        - file: notebooks/softwares/apptainer/app-shell
        - file: notebooks/softwares/apptainer/app-instance
      - file: notebooks/softwares/chimerax/chimera
        entries:
        - glob: "notebooks/softwares/chimerax/chimera*"
      - file: "notebooks/softwares/ffmpeg"
      - file: "notebooks/softwares/gnu-parallel"