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There could be option like --no-use, which would have inversed effect comparing to --use, i.e. select packages, that don't have mentioned flag.
As for use case (I just have it), it could be used with --installed-with-use to find installed packages that dropped some obsoleted use flag. E.g. I could use it to find those, which droped python2_7 support.
For now I had to do it with diff:
diff \
<( eix -c --installed-with-use python_targets_python2_7 --only-names ) \
<( eix -c --installed-with-use python_targets_python2_7 --use python_targets_python2_7 --only-names ) | less
but that's not as convenient as if packages were listed by eix.
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