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performanceMemory and time usage improvementsMemory and time usage improvements
Description
Expects sorted VCF
- Replace
Vec<T>withBox<T>for the value in data- would this avoid duplicates?
- Read the whole VCF into a buffer and use non-owned slices to refer to the lines.
- That'd avoid the heap overhead of allocations.
- mmap the file and avoid duplicating the page cache in your process's memory
- Serialize the VCF in fixed size chunks to disk
- less memory but more time
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performanceMemory and time usage improvementsMemory and time usage improvements