Sapelo2 Setup

[Weiming-Hu]

Request a compute node from OpenOnDemand and move on with the following commands. You will need VPN if you are off-campus. Request access from here.

# Download and install micromamba
# First time only! Skip if exists.
#
"${SHELL}" <(curl -L micro.mamba.pm/install.sh)

# Restart your shell

# Proceed with environment installation
# This example sets up an environment with 
# torch and other common analysis and geospatial tools
#
micromamba create -n venv_torch python=3.12 -y

micromamba activate venv_torch

pip install \
    torch torchvision numpy scipy pandas scikit-learn \
    matplotlib pillow jupyterlab ipykernel ipywidgets ipympl \
    opencv-python xarray[complete] cartopy tqdm \
    torchgeo lightning torchmetrics tensorboard \
    jupyterlab-lsp python-lsp-server

# To install as a kernel
python -m ipykernel install --user --name venv_torch --display-name "venv_torch"

# To uninstall the environment
micromamba env remove -n venv_torch