Step 2) "Invalid option: ---input_base_uri"

[timpal0l]

bash scripts/apptainer_run_quality_signals.sh \
  --config configs/rp_v2.0.conf \
  --dump_id "2022-49" \
  --input_base_uri "file:///path/to/data/root" \
  --output_base_uri "file:///path/to/outout/data/root" \
  --max_docs -1

Invalid option: ---input_base_uri
Usage: apptainer_run_quality_signals.sh [ -c | --config ] [ -d | --dump_id ]

[mauriceweber]

good catch, thanks for reporting! The three flags --input_base_uri, --output_base_uri and --max_docs are actually set in the config file:

RedPajama-Data/configs/rp_v2.0.conf

Lines 4 to 6 in bb594b0

	INPUT_BASE_URI="file://${DATA_ROOT}/"
	OUTPUT_BASE_URI="file://${DATA_ROOT}/rpv2"
	MAX_DOCS=-1

You can just drop them in the call to the apptainer script.