Skip to content

identify_metabolites() unable to find package ‘metID’ #5

@goterm

Description

@goterm

Hello,

trying to run identify_metabolites():

metid::identify_metabolites(ms1.data = "MS1_annotations.csv",
ms1.match.ppm = 10,
rt.match.tol = 1000000,
polarity = "negative",
column = "rp",
path = path,
candidate.num = 3,
database = "keggMS1Database_1.0",
threads = 5)

but it returns:

Error: BiocParallel errors
5 remote errors, element index: 1, 2, 3, 4, 5
73 unevaluated and other errors
first remote error:
Error in .requirePackage(package): unable to find required package ‘metID’

why is identify_metabolites() trying to load metID?

I have installed metid as follows:
if(!require(remotes)){
install.packages("remotes")
}
remotes::install_gitlab("tidymass/metid", force = TRUE)
library(metid)

any suggestions on how to fix this?
thanks

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions