diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION index f75f684..ea4da41 100644 --- a/CRAN-SUBMISSION +++ b/CRAN-SUBMISSION @@ -1,3 +1,3 @@ Version: 1.2.3 -Date: 2025-12-26 09:41:54 UTC -SHA: 8dff07d77bd63492c8d69848ce5c4c5cd621cc90 +Date: 2026-01-14 04:13:22 UTC +SHA: c22b4b4a72f3682f42246ecc6bbe84e0dd1afb76 diff --git a/DESCRIPTION b/DESCRIPTION index cd2364d..8119ef4 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -2,7 +2,7 @@ Package: denim Type: Package Title: Generate and Simulate Deterministic Compartmental Models Version: 1.2.3 -Date: 2025-12-26 +Date: 2026-01-14 Authors@R: c( person("Thinh", "Ong", , "thinhop@oucru.org", role = c("aut", "cph"), comment = c(ORCID = "0000-0001-6772-9291")), @@ -19,7 +19,7 @@ Authors@R: c( person("Ingo", "Berg", ,role = c("ctb", "cph"), comment="Author of the bundled MuParser C++ library") ) -Description: R package to build and simulate deterministic compartmental models that can be non-Markovian. Length of stay in each compartment can be defined to follow a parametric distribution (d_exponential(), d_gamma(), d_weibull(), d_lognormal()) or a non-parametric distribution (nonparametric()). Other supported types of transition from one compartment to another includes fixed transition (constant()), multinomial (multinomial()), fixed transition probability (transprob()). +Description: R package to build and simulate deterministic compartmental models that can be semi-Markovian. Length of stay in each compartment can be defined to follow a parametric distribution (d_exponential(), d_gamma(), d_weibull(), d_lognormal()) or a non-parametric distribution (nonparametric()). License: MIT + file LICENSE URL: https://drthinhong.com/denim/, https://github.com/thinhong/denim diff --git a/cran-comments.md b/cran-comments.md index 73b472c..467e0fb 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -2,7 +2,7 @@ This is a resubmission. In this version I have: * Clarify the ownership for the bundled code by adding the authors as copyright holders * Add new test cases -* Update vignette +* Update vignettes ## R CMD check results diff --git a/vignettes/denim.Rmd b/vignettes/denim.Rmd index dda2f8f..f038f41 100644 --- a/vignettes/denim.Rmd +++ b/vignettes/denim.Rmd @@ -50,7 +50,7 @@ legend("right", legend = c(0.5, 1.0, 1.5), col = col_codes, lty = 1, lwd = 3, bty = "\n") ``` -A more realistic length of stay distribution can look like this, of which most patients recovered after 4 days. We defined this using a gamma distribution with shape = 3 and rate = 1/2. +A more realistic length of stay distribution can look like this, of which most patients recovered after 4 days. We defined this using a gamma distribution with `shape = 3` and `rate = 1/2`. ```{r, echo=FALSE} x <- seq(0, 20, 0.001)