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Description
The evaluation script hardcodes the network paths on Thorshammer:
onsides/snakemake/onsides/evaluate/Snakefile
Lines 78 to 85 in efef3aa
| network_path = Path( | |
| "/data1/home/berkowitzj/onsides/models/microsoft/" | |
| "BiomedNLP-PubMedBERT-base-uncased-abstract" | |
| ) | |
| model_path = Path( | |
| "/data1/home/berkowitzj/onsides/models/" | |
| "bestepoch-bydrug-PMB_14-ALL-125-all_222_24_25_1e-06_256_32.pth" | |
| ) |
This should be done differently, and these weights should be stored elsewhere.
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