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NAMESPACE
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79 lines (78 loc) · 2.16 KB
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# Generated by roxygen2: do not edit by hand
export(newBridge)
export(simulateRogs)
export(symmetricBranching)
exportClasses(Bridge)
exportMethods(getBridge)
exportMethods(plotBridgeSimulation)
exportMethods(plotBridgeStats)
exportMethods(plotBridgeTree)
exportMethods(runBridge)
exportMethods(runPermutation)
import(methods)
importFrom(ape,Nedge)
importFrom(ape,Ntip)
importFrom(ape,bind.tree)
importFrom(ape,dist.nodes)
importFrom(ape,drop.tip)
importFrom(ape,mrca)
importFrom(ape,node.depth)
importFrom(ape,node.height)
importFrom(ape,rotateConstr)
importFrom(ape,rtree)
importFrom(ape,stree)
importFrom(data.table,as.data.table)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_colour_gradient2)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,graphics.off)
importFrom(grDevices,pdf)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.default)
importFrom(graphics,points)
importFrom(graphics,segments)
importFrom(graphics,strwidth)
importFrom(graphics,text)
importFrom(snow,clusterExport)
importFrom(snow,makeCluster)
importFrom(snow,parLapply)
importFrom(snow,parSapply)
importFrom(snow,stopCluster)
importFrom(stats,aggregate)
importFrom(stats,ecdf)
importFrom(stats,integrate)
importFrom(stats,p.adjust)
importFrom(stats,pbinom)
importFrom(stats,pnorm)
importFrom(stats,pt)
importFrom(stats,quantile)
importFrom(stats,rbinom)
importFrom(stats,reorder)
importFrom(stats,sd)
importFrom(stats,uniroot)
importFrom(stats,var)
importFrom(stats,weighted.mean)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)