DESCRIPTION

Package: GeneBridge
Type: Package
Title: Rooting Orthologous Genes in Large-Scale Evolutionary Analyses
Version: 1.0.0
Authors@R: 
    c(person("Leonardo", "Campos", role = "ctb"),
      person("Rodrigo", "Dalmolin", role = "aut"),
      person("Mauro", "Castro", role = c("aut", "cre"),
              email = "mauro.a.castro@gmail.com",
              comment = c(ORCID = "0000-0003-4942-8131")))
Depends: R (>= 4.3), methods
Imports: grDevices, graphics, utils, stats, ape, data.table, snow, ggplot2, ggrepel
Suggests: knitr, rmarkdown, testthat, ggthemes, egg, caret
Description: GeneBridge provides tools for inferring the evolutionary roots of genes across multiple species. It implements the Bridge algorithm to identify the most likely rooting of genes within a given species tree. By rooting orthologous genes in large-scale evolutionary snalysis, GeneBridge can provide a framework for exploring evolutionary roots within biological systems.
License: Artistic-2.0
VignetteBuilder: knitr
URL: https://github.com/sysbiolab/GeneBridge
BugReports: https://github.com/sysbiolab/GeneBridge/issues
Collate:
  AllChecks.R
  AllClasses.R
  AllGenerics.R
  AllMethods.R
  AllSupplements.R
  AllPlots.R
  Misc.R
Encoding: UTF-8
RoxygenNote: 7.3.2