Refactor hard coding of dependencies

[aliraeisdanaei]

Move the hard coded locations to a file that the script files read.

[aliraeisdanaei]

Actually the paths should already be received as arguments. Refactor the documentation.

[aliraeisdanaei]

CleverSelfComposer.scala
line 20

Process(f"python3 /home/shuolin/IdeaProjects/spl-tools/src/main/py/self_composer.py " +