Error in sel.mat

[ZjmaNMU]

Hi,

Thanks for your outstanding work. I am running the package in our own data but I got this error in "Select epigenetic features for SNV/indel" step.

[1] "Progress : 95/100"
[1] "Progress : 92/100"
[1] "Progress : 93/100"
[1] "Progress : 97/100"
[1] "Progress : 98/100"
[1] "Progress : 99/100"
Error in sel.mat[, (p + 1):(2 * p)] : subscript out of bounds
In addition: Warning messages:
1: In parallel::mclapply(1:B, FUN = function(k) oneSample(k, seed.no1[k], :
scheduled cores 6 encountered errors in user code, all values of the jobs will be affected
2: In matrix(unlist(parallel::mclapply(1:B, FUN = function(k) oneSample(k, :
data length [27736] is not a sub-multiple or multiple of the number of rows [100]

Is there any advice?

Thanks so much

Ma

[changmmm]

Hi Ma,

Thanks for using our package. The error seems to arise during the LASSO feature selection step, to help us better understand your issue, could you let us know if you are using the default parameters? For the features file, are you using your own features or the default "./features" that we have provided? Thanks!

[jgarces02]

Seems to be related to the multithreading... when setting cores = 1 it works.