ci(dependabot): bump actions/checkout from 4 to 5 #156
Workflow file for this run
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| name: build | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| steps: | |
| - name: Checkout the repo | |
| uses: actions/checkout@v5 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: subcell_pipeline | |
| environment-file: ./environment.yml | |
| - name: Set up PDM | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.10" | |
| version: 2.12.2 | |
| cache: true | |
| - name: Cache environment | |
| id: cached-dependencies | |
| uses: actions/cache@v4 | |
| env: | |
| CACHE_NUMBER: 0 # Increment this number if you wish to hard-refresh the cache. | |
| with: | |
| path: /usr/share/miniconda/envs/subcell_pipeline | |
| key: ${{ runner.os }}-${{ hashFiles('**/pdm.lock', '**/environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| - name: Install dependencies | |
| if: steps.cached-dependencies.outputs.cache-hit != 'true' | |
| shell: bash -l {0} | |
| run: | | |
| conda create -n subcell_pipeline python=3.10 | |
| conda activate subcell_pipeline | |
| conda env update --file environment.yml --prune | |
| pdm sync | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| pdm run pytest --cov=subcell_pipeline/ --cov-report html | |
| rm htmlcov/.gitignore | |
| - name: Publish coverage report | |
| if: ${{ github.ref == 'refs/heads/main' && matrix.python-version == '3.10' }} | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| branch: gh-pages | |
| folder: htmlcov | |
| target-folder: _coverage | |
| - name: Extract coverage percent | |
| if: ${{ github.ref == 'refs/heads/main' && matrix.python-version == '3.10' }} | |
| run: | | |
| echo "COVERAGE=$(grep -oP 'pc_cov">\K([0-9]+)' htmlcov/index.html)" >> $GITHUB_ENV | |
| - name: Generate coverage badge | |
| if: ${{ github.ref == 'refs/heads/main' && matrix.python-version == '3.10' }} | |
| uses: knightdave/anybadge-action@v1.1.0 | |
| with: | |
| file: docs/_badges/coverage.svg | |
| label: coverage | |
| value: ${{ env.COVERAGE }} | |
| value_format: "%d%%" | |
| anybadge_args: 50=red 60=orange 80=yellow 100=green | |
| template: docs/_badges/template.svg | |
| overwrite: true | |
| - name: Publish badge | |
| if: ${{ github.ref == 'refs/heads/main' && matrix.python-version == '3.10' }} | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| branch: gh-pages | |
| folder: docs/_badges | |
| target-folder: _badges | |
| clean: false | |
| result: | |
| if: ${{ always() && github.ref == 'refs/heads/main' }} | |
| runs-on: ubuntu-latest | |
| needs: [build] | |
| steps: | |
| - name: Checkout the repo | |
| uses: actions/checkout@v5 | |
| - name: Get build result | |
| run: | | |
| if [[ ${{ needs.build.result }} == "success" || ${{ needs.build.result }} == "skipped" ]]; then | |
| exit 0 | |
| else | |
| exit 1 | |
| fi | |
| - name: Generate passing badge | |
| if: success() | |
| uses: knightdave/anybadge-action@v1.1.0 | |
| with: | |
| file: docs/_badges/build.svg | |
| label: build | |
| value: passing | |
| color: green | |
| template: docs/_badges/template.svg | |
| overwrite: true | |
| - name: Generate failing badge | |
| if: failure() | |
| uses: knightdave/anybadge-action@v1.1.0 | |
| with: | |
| file: docs/_badges/build.svg | |
| label: build | |
| value: failing | |
| color: red | |
| template: docs/_badges/template.svg | |
| overwrite: true | |
| - name: Publish badge | |
| if: success() || failure() | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| branch: gh-pages | |
| folder: docs/_badges | |
| target-folder: _badges | |
| clean: false |