Skip to content

freq.py send many error and not calculate allele frequencies #5

@RonOLab

Description

@RonOLab

Hello,
Can you tell me, please, what is wrong with the attached files?

example_geno.txt
punica_pop.txt

running
python3 genomics_general-master/freq.py -g data/Punica_SNPs_hw.geno.gz -p G1 -p G2 -p G3 -p Outgroup --popsFile data/punica_pop.txt --target derived -t 10 -o data/punica_freq.tsv.gz,
I get many errors. It runs but the allele proportions are not calculated.
Thanks,
Ron

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions