Hello,
Can you tell me, please, what is wrong with the attached files?
example_geno.txt
punica_pop.txt
running
python3 genomics_general-master/freq.py -g data/Punica_SNPs_hw.geno.gz -p G1 -p G2 -p G3 -p Outgroup --popsFile data/punica_pop.txt --target derived -t 10 -o data/punica_freq.tsv.gz,
I get many errors. It runs but the allele proportions are not calculated.
Thanks,
Ron