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Makefile
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166 lines (149 loc) · 9.36 KB
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INCLUDE_PATH=./include
LIB_PATH=./lib
SRC_DIR=src
BIN_DIR=bin
CFLAGS=-O3 -funroll-loops -msse4.2 -DMEM_INFO -DOUTPUT_STATS -DMEM_INFO -DWRITE_R_OUTPUT -DNDEBUG # -DSDSL_DEBUG_ALGORITHMS_FOR_COMPRESSED_SUFFIX_ARRAYS
#CFLAGS=-O0 -g -funroll-loops -msse4.2 -DMEM_INFO -DOUTPUT_STATS -DMEM_INFO -DWRITE_R_OUTPUT # -DSDSL_DEBUG_ALGORITHMS_FOR_COMPRESSED_SUFFIX_ARRAYS
all: ${BIN_DIR}/rosa_helping_structures.o \
${BIN_DIR}/rosa_helping_functions.o \
${BIN_DIR}/bu_interval.o \
${BIN_DIR}/pattern_file.o \
${BIN_DIR}/rosa_sd2_delta \
${BIN_DIR}/rosa_sd2_delta_P0 \
${BIN_DIR}/rosa_sd2_delta_P1 \
${BIN_DIR}/rosa_sd2_delta_P2 \
${BIN_DIR}/rosa_sd2_delta_P3 \
${BIN_DIR}/rosa_sd2_delta_P4 \
${BIN_DIR}/rosa_sd2_delta_P5 \
${BIN_DIR}/fm16_huff_rrr \
${BIN_DIR}/fm64_huff_rrr \
${BIN_DIR}/create_pattern_files
# ${BIN_DIR}/rosa_sd2\
# ${BIN_DIR}/rosa_sd_load_only\
# ${BIN_DIR}/rosa_sd_create_only\
# ${BIN_DIR}/rosa_sd_search_block_only
# ${BIN_DIR}/rosa_bv \
# ${BIN_DIR}/rosa_rrr \
# ${BIN_DIR}/rosa_rrr63 \
# ${BIN_DIR}/rosa_gap \
# ${BIN_DIR}/fm_huff \
# ${BIN_DIR}/fm_huff_rrr127 \
# ${BIN_DIR}/fm_rlmn
${BIN_DIR}/create_pattern_files: ${SRC_DIR}/create_pattern_files.cpp ${BIN_DIR}/bu_interval.o
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} \
${SRC_DIR}/create_pattern_files.cpp -o ${BIN_DIR}/create_pattern_files \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
${BIN_DIR}/rosa_helping_structures.o:
g++ ${CFLAGS} -I${INCLUDE_PATH} -c ${SRC_DIR}/rosa_helping_structures.cpp -o ${BIN_DIR}/rosa_helping_structures.o
${BIN_DIR}/bu_interval.o: ${SRC_DIR}/bu_interval.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -c ${SRC_DIR}/bu_interval.cpp -o ${BIN_DIR}/bu_interval.o
${BIN_DIR}/rosa_helping_functions.o: ${SRC_DIR}/rosa_helping_functions.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -c ${SRC_DIR}/rosa_helping_functions.cpp -o ${BIN_DIR}/rosa_helping_functions.o
${BIN_DIR}/pattern_file.o: ${SRC_DIR}/pattern_file.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -c ${SRC_DIR}/pattern_file.cpp -o ${BIN_DIR}/pattern_file.o
${BIN_DIR}/rosa_sd2: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/bu_interval.o
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} \
${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_sd2 \
${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
${BIN_DIR}/rosa_sd2_delta: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/bu_interval.o ${SRC_DIR}/rosa_main.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DLCP_WRAP=1\
${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_sd2_delta \
${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
${BIN_DIR}/rosa_sd2_delta_P0: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/bu_interval.o ${SRC_DIR}/rosa_main.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DLCP_WRAP=1 -DBENCHMARK_INTERNAL_MATCH_ONLY\
${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_sd2_delta_P0 \
${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
${BIN_DIR}/rosa_sd2_delta_P1: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/bu_interval.o ${SRC_DIR}/rosa_main.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DLCP_WRAP=1 -DBENCHMARK_LOAD_ONLY\
${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_sd2_delta_P1 \
${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
${BIN_DIR}/rosa_sd2_delta_P2: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/bu_interval.o ${SRC_DIR}/rosa_main.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DLCP_WRAP=1 -DBENCHMARK_CREATE_ONLY\
${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_sd2_delta_P2 \
${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
${BIN_DIR}/rosa_sd2_delta_P3: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/bu_interval.o ${SRC_DIR}/rosa_main.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DLCP_WRAP=1 -DBENCHMARK_SEARCH_BLOCK_ONLY\
${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_sd2_delta_P3 \
${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
${BIN_DIR}/rosa_sd2_delta_P4: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/bu_interval.o ${SRC_DIR}/rosa_main.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DLCP_WRAP=1 -DNO_FINAL_MATCHING\
${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_sd2_delta_P4 \
${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
${BIN_DIR}/rosa_sd2_delta_P5: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/bu_interval.o ${SRC_DIR}/rosa_main.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DLCP_WRAP=1\
${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_sd2_delta_P5 \
${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
#${BIN_DIR}/rosa_bv: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o
# g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DROSA_BV \
# ${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_bv \
# ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
# -lsdsl -ldivsufsort -ldivsufsort64
#
#${BIN_DIR}/rosa_rrr: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o
# g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DROSA_RRR \
# ${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_rrr \
# ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
# -lsdsl -ldivsufsort -ldivsufsort64
#
#${BIN_DIR}/rosa_gap: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o
# g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DROSA_GAP \
# ${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_gap \
# ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
# -lsdsl -ldivsufsort -ldivsufsort64
#
#${BIN_DIR}/rosa_rrr63: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o
# g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DROSA_RRR_VAR \
# ${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/rosa_rrr63 \
# ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
# -lsdsl -ldivsufsort -ldivsufsort64
#
#${BIN_DIR}/fm_huff: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o
# g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DFM_HUFF \
# ${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/fm_huff \
# ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
# -lsdsl -ldivsufsort -ldivsufsort64
#
${BIN_DIR}/fm16_huff_rrr: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/bu_interval.o ${SRC_DIR}/rosa_main.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DFM16_HUFF_RRR \
${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/fm16_huff_rrr \
${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
${BIN_DIR}/fm64_huff_rrr: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/bu_interval.o ${SRC_DIR}/rosa_main.cpp
g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DFM64_HUFF_RRR \
${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/fm64_huff_rrr \
${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
${BIN_DIR}/bu_interval.o \
-lsdsl -ldivsufsort -ldivsufsort64
#
#${BIN_DIR}/fm_huff_rrr127: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o
# g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DFM_HUFF_RRR127 \
# ${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/fm_huff_rrr127 \
# ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
# -lsdsl -ldivsufsort -ldivsufsort64
#
#${BIN_DIR}/fm_rlmn: ${BIN_DIR}/pattern_file.o ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o
# g++ ${CFLAGS} -I${INCLUDE_PATH} -L${LIB_PATH} -DFM_RL \
# ${SRC_DIR}/rosa_main.cpp -o ${BIN_DIR}/fm_rlmn \
# ${BIN_DIR}/rosa_helping_functions.o ${BIN_DIR}/rosa_helping_structures.o ${BIN_DIR}/pattern_file.o \
# -lsdsl -ldivsufsort -ldivsufsort64
#
clean:
rm -f ${BIN_DIR}/*