Support for number_tr

Author: lmrodriguezr

data/catalogues.yaml

@@ -5,6 +5,9 @@
 #   matches a catalogue code
 # - name_en: Name of the culture collection in English, if +name+ is spelled in
 #   a different language
+# - number_tr: A two-string array indicating that characters in the first list
+#   should be replaced by those in the second list prior to passing the number
+#   to the `url_pattern`
 # - organization: Name of the organization generating the catalogue. If a
 #   well-known acronym exists, this field should start with this acronym
 #   followed by colon (:) and the spelled-out name of the organization
@@ -116,6 +119,14 @@ catalogues:
     organization: Czech Academy of Sciences
     country_code: CZ
     url_pattern: "https://ccala.butbn.cas.cz/strain/%s"
+  - codes: [ CCAP ]
+    name: "Culture Collection of Algae & Protozoa"
+    organization: "SAMS: Scottish Association for Marine Science"
+    country_code: UK
+    url: "https://www.ccap.ac.uk/"
+    number_tr: ["/", "-"]
+    url_pattern: "https://www.ccap.ac.uk/catalogue/strain-%s"
+    _examples: [ CCAP 1460/5 ]
   - codes: [ CCM ]
     name: Czech Collection of Microorganisms
     organization: Masaryk University
@@ -389,7 +400,8 @@ catalogues:
     name: National Institute for Environmental Studies Collection
     organization: National Institute for Environmental Studies
     country_code: JP
-    url_pattern: "https://mcc.nies.go.jp/numberSearch.do?strainNumber=%s"
+    url: "https://mcc.nbrp.jp/index_en.html"
+    _examples: [ NIES 204 ]
   - codes: [ NRC, NRCC ]
     country_code: CA
     name: Division of Biological Sciences, National Research Council of Canada

lib/strain-code/catalogue.rb

@@ -26,7 +26,7 @@ def catalogue(code)
   end
 
   attr_accessor :codes, :country_code, :name, :name_en, :organization
-  attr_accessor :url, :url_pattern
+  attr_accessor :number_tr, :url, :url_pattern
 
   def initialize(hash)
     hash.each { |k, v| self.send("#{k}=", v) unless k =~ /^_/ }

lib/strain-code/number.rb

@@ -18,7 +18,10 @@ def number
   end
 
   def url
-    catalogue.url_pattern % accession if catalogue&.url_pattern
+    return unless catalogue&.url_pattern && accession
+
+    acc = catalogue&.number_tr ? accession.tr(*catalogue.number_tr) : accession
+    catalogue.url_pattern % acc
   end
 
   def catalogue

lib/strain-code/version.rb

@@ -1,5 +1,5 @@
 class StrainCode
-  VERSION       = '0.3.11'
+  VERSION       = '0.4.0'
   VERSION_ARRAY = VERSION.split(/\./).map { |x| x.to_i } # :nodoc:
   VERSION_MAJOR = VERSION_ARRAY[0] # :nodoc:
   VERSION_MINOR = VERSION_ARRAY[1] # :nodoc: