Map of all validated lists

Author: lmrodriguezr

app/controllers/registers_controller.rb

@@ -22,7 +22,7 @@ class RegistersController < ApplicationController
     only: %i[
       return return_commit endorse validate
       internal_notes nomenclature_review genomics_review snooze_curation
-      recheck_pdf_files curation_genomics
+      recheck_pdf_files curation_genomics map
     ]
   )
   before_action(
@@ -93,6 +93,14 @@ def index(status = :validated)
                 .paginate(page: params[:page], per_page: 30)
   end
 
+  # GET /registers/map
+  def map
+    @crumbs     = [['Lists', registers_url], 'Map']
+    @registers  = Register.where(validated: true)
+    @sample_set = CollectioSampleSet.new(@registers)
+    render('genomes/sample_map', layout: !params[:content].present?)
+  end
+
   # GET /registers/r:abcd
   # GET /registers/r:abcd.json
   def show

app/models/register/sample_set.rb

@@ -15,13 +15,32 @@ def source_object
     register
   end
 
+  def type_genomes
+    @type_genomes ||= register.type_genomes.uniq
+  end
+
   def genome_sample_sets
-    @genome_sample_sets ||=
-      register.type_genomes.uniq.map(&:sample_set).compact
+    @genome_sample_sets ||= type_genomes.uniq.map(&:sample_set).compact
   end
 
   def samples
     @samples ||= genome_sample_sets.map(&:samples).flatten
   end
 end
 
+class CollectionSampleSet < RegisterSampleSet
+  attr :collection
+
+  def initialize(collection)
+    @collection = collection
+  end
+
+  def source_object
+    collection
+  end
+
+  def type_genomes
+    @type_genomes ||= collection.map(&:type_genomes).flatten.uniq
+  end
+end
+

config/routes.rb

@@ -139,6 +139,9 @@
   # Register lists
   # --> Standard resources
   resources(:registers, param: :accession) do
+    collection do
+      get  :map
+    end
     member do
       # --> Display
       get  :table