Clean public indexes

Only genomes that serve as nomenclatural type of public names can be seen here

Author: lmrodriguezr

app/controllers/application_controller.rb

@@ -42,7 +42,7 @@ def main
       names: Name.all_public.order(created_at: :desc),
       publications: Publication.all.order(journal_date: :desc),
       register_lists: Register.where(validated: true).order(updated_at: :desc),
-      genomes: Genome.all.order(created_at: :desc),
+      genomes: Genome.all_public.order(created_at: :desc),
       strains: Strain.all.order(created_at: :desc)
     }
     @display = {

app/controllers/genomes_controller.rb

@@ -16,7 +16,7 @@ class GenomesController < ApplicationController
 
   # GET /genomes or /genomes.json
   def index
-    @genomes = Genome.all.order(created_at: :desc)
+    @genomes = Genome.all_public.order(created_at: :desc)
                      .paginate(page: params[:page], per_page: 30)
     @crumbs = ['Genomes']
   end

app/models/genome.rb

@@ -80,10 +80,13 @@ def required
       ]
     end
 
-
     def miga_project_path
       File.join(Rails.root, '..', 'miga_check')
     end
+
+    def all_public
+      where(typified_names: Name.all_public)
+    end
   end
 
   @@FIELDS_WITH_AUTO = %i[

app/models/strain.rb

@@ -12,6 +12,12 @@ class Strain < ApplicationRecord
   include HasExternalResources
   include Strain::ExternalResources
 
+  class << self
+    def all_public
+      where(typified_names: Name.all_public)
+    end
+  end
+
   def numbers
     numbers_string.split(' = ')
   end