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seqtk module: create #38

@AnnaSyme

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@AnnaSyme

This would be good for a case where a virus sample has (too) high coverage - this means some parameters don't work well in the assembly (i.e. they are optimised for e.g. X100 not X10,000). (At some point, increased coverage just contributes erroneous k-mers rather than useful information).

  • Use seqtk to subsample the fastq file before assembly.
  • The seqtk command required is "sample"
  • "seqtk sample" is in the Galaxy Toolshed but need to see if it works.

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