From 371ca8af801b6afef21f46049457d42f59f858ee Mon Sep 17 00:00:00 2001 From: havok2063 Date: Tue, 7 Oct 2025 15:39:00 -0400 Subject: [PATCH 1/8] switching to uv and updating docker to py12 --- Dockerfile | 37 +- poetry.lock | 8064 ------------------------------------------------ pyproject.toml | 165 +- uv.lock | 7724 ++++++++++++++++++++++++++++++++++++++++++++++ 4 files changed, 7827 insertions(+), 8163 deletions(-) delete mode 100644 poetry.lock create mode 100644 uv.lock diff --git a/Dockerfile b/Dockerfile index 0a0c506..f182276 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,11 +1,16 @@ # Stage 1: Development stage for Python dependencies -FROM python:3.10-slim AS dep-stage +FROM python:3.12-slim AS dep-stage + +ENV UV_COMPILE_BYTECODE=1 +ENV UV_LINK_MODE=copy +ENV UV_PYTHON_DOWNLOADS=0 +ENV VIRTUAL_ENV=/app/venv # Set up app dir WORKDIR /tmp # Copy project files over -COPY ./pyproject.toml ./poetry.lock ./ +COPY ./pyproject.toml ./uv.lock ./ # Install system prereq packages RUN apt-get update && \ @@ -15,7 +20,7 @@ RUN apt-get update && \ # these are for h5py in sdss_explorer curl libhdf5-dev pkg-config \ # these are for vaex - libpcre3 libpcre3-dev gcc g++ libboost-all-dev \ + gcc g++ libboost-all-dev \ libffi-dev python3-dev libxml2-dev libxslt-dev \ libpq-dev zlib1g-dev \ && apt-get clean \ @@ -35,18 +40,29 @@ ENV PIP_FIND_LINKS=https://github.com/ddelange/vaex/releases/expanded_assets/cor RUN pip install --force-reinstall vaex ENV PIP_FIND_LINKS= -# Install poetry and project dependencies -RUN pip install poetry && \ - poetry config virtualenvs.create false && \ - poetry install -E solara --no-root && \ - rm -rf ~/.cache +# # Install poetry and project dependencies +# RUN pip install poetry && \ +# poetry config virtualenvs.create false && \ +# poetry install -E solara --no-root && \ +# rm -rf ~/.cache + +# Installing uv and then project dependencies +RUN pip install uv +RUN uv venv /app/venv # make venv +RUN --mount=type=cache,target=/root/.cache/uv \ + #--mount=type=bind,source=uv.lock,target=uv.lock \ + #--mount=type=bind,source=pyproject.toml,target=pyproject.toml \ + uv sync --frozen --no-install-project --no-dev --extra solara + # Stage 2: Development stage for the project FROM dep-stage AS dev-stage # Copy the main project files over and install COPY ./ ./ -RUN poetry install -E solara --only main +#RUN poetry install -E solara --only main +RUN --mount=type=cache,target=/root/.cache/uv \ + uv sync --frozen --no-dev --extra solara # Create dir for socket and logs RUN mkdir -p /tmp/webapp @@ -72,4 +88,5 @@ LABEL org.opencontainers.image.description="valis production image" EXPOSE 8000 # Start the FastAPI app for production -CMD ["poetry", "run", "gunicorn", "-c", "python/valis/wsgi_conf.py", "valis.wsgi:app"] +#CMD ["poetry", "run", "gunicorn", "-c", "python/valis/wsgi_conf.py", "valis.wsgi:app"] +CMD ["uv", "run", "gunicorn", "-c", "python/valis/wsgi_conf.py", "valis.wsgi:app"] diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index cf33399..0000000 --- a/poetry.lock +++ /dev/null @@ -1,8064 +0,0 @@ -# This file is automatically @generated by Poetry 2.0.1 and should not be changed by hand. - 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bb43c4dd747f2f49387f7a498578a4bcd1baee45 Mon Sep 17 00:00:00 2001 From: havok2063 Date: Tue, 7 Oct 2025 15:43:55 -0400 Subject: [PATCH 3/8] updating build ci --- .github/workflows/build.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 6c9cb1b..0934e96 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -32,9 +32,9 @@ jobs: - name: Install dependencies run: | - poetry install # --no-interaction --no-ansi -vvv # add this for local debugs with "act" + uv pip install # --no-interaction --no-ansi -vvv # add this for local debugs with "act" if: steps.cache.outputs.cache-hit != 'true' - name: Test with pytest run: | - poetry run pytest tests \ No newline at end of file + uv run pytest tests \ No newline at end of file From 55a10fbb01340221a9d228138c62c1bc72d3bf2d Mon Sep 17 00:00:00 2001 From: havok2063 Date: Tue, 7 Oct 2025 15:51:07 -0400 Subject: [PATCH 4/8] updating build ci --- .github/workflows/build.yml | 49 +++++++++++++++++++++++-------------- 1 file changed, 31 insertions(+), 18 deletions(-) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 0934e96..fa6ff4d 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -2,6 +2,9 @@ name: Build Package on: [push, pull_request] +env: + UV_SYSTEM_PYTHON: 1 + jobs: build: @@ -10,30 +13,40 @@ jobs: steps: - uses: actions/checkout@v3 - - name: Set up Python 3.10 + - name: Set up Python 3.12 id: setup-python uses: actions/setup-python@v4 with: - python-version: "3.10" + python-version: "3.12" - - name: Install Poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-path: ~/.virtualenvs + # - name: Install Poetry + # uses: snok/install-poetry@v1 + # with: + # virtualenvs-path: ~/.virtualenvs - - name: Cache Poetry virtualenv - uses: actions/cache@v4 - id: cache + - name: Install uv + uses: astral-sh/setup-uv@v6 with: - path: ~/.virtualenvs - key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - restore-keys: | - venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - - - name: Install dependencies - run: | - uv pip install # --no-interaction --no-ansi -vvv # add this for local debugs with "act" - if: steps.cache.outputs.cache-hit != 'true' + # Install a specific version of uv. + version: "0.8.24" + enable-cache: true + + # - name: Cache Poetry virtualenv + # uses: actions/cache@v4 + # id: cache + # with: + # path: ~/.virtualenvs + # key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + # restore-keys: | + # venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + + # - name: Install dependencies + # run: | + # uv pip install # --no-interaction --no-ansi -vvv # add this for local debugs with "act" + # if: steps.cache.outputs.cache-hit != 'true' + + - name: Install the project + run: uv sync --locked --all-extras --dev - name: Test with pytest run: | From 33a64022aecb69a8ed8ad3f9de90d8e1af7710f2 Mon Sep 17 00:00:00 2001 From: havok2063 Date: Tue, 7 Oct 2025 16:05:41 -0400 Subject: [PATCH 5/8] pinning astropy to <7 for now --- pyproject.toml | 3 +- uv.lock | 126 +++++++++++++++---------------------------------- 2 files changed, 40 insertions(+), 89 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 553e6c7..d24771a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12,7 +12,7 @@ authors = [ ] dependencies = [ "aiofiles>=24.1.0", - "astropy>=6.1.7", + "astropy>=6.1.7,<7", "astroquery<=0.4.7", "deepmerge>=2.0", "fastapi-cache2[redis]>=0.2.2", @@ -67,6 +67,7 @@ dev = [ "pytest-mock>=3.15.1", "pytest-sugar>=1.1.1", "ruff>=0.13.3", + "setuptools>=80.9.0", ] [tool.setuptools] diff --git a/uv.lock b/uv.lock index 332fbf5..6cf7282 100644 --- a/uv.lock +++ b/uv.lock @@ -193,7 +193,7 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+ { name = "astropy" }, { name = "requests" }, ] sdist = { url = "https://files.pythonhosted.org/packages/b6/27/e5cec6dea4bfe4e4e6819bd940bd74edbc5b168be7cd15fbf0a0712a3995/pyvo-1.7.tar.gz", hash = "sha256:a6fad9efd410732d113e55df43b0201c9acb2e29f27532c71bda56f38ce62320", size = 2095584, upload-time = "2025-06-02T03:06:01.788Z" } @@ -5110,8 +5055,7 @@ name = "radio-beam" version = "0.3.9" source = { registry = "https://pypi.org/simple" } dependencies = [ - { name = "astropy", version = "6.1.7", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, - { name = "astropy", version = "7.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, + { name = "astropy" }, { name = "numpy" }, { name = "scipy", version = "1.15.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, { name = "scipy", version = "1.16.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, @@ -5371,8 +5315,7 @@ name = "regions" version = "0.10" source = { registry = "https://pypi.org/simple" } dependencies = [ - { name = "astropy", version = "6.1.7", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, - { name = "astropy", version = "7.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, + { name = "astropy" }, { name = "numpy" }, ] sdist = { url = "https://files.pythonhosted.org/packages/84/09/44eb30f64ae002ca47d53d341e7f0d0b03bc5682b4ccc2ea96f044ff6e89/regions-0.10.tar.gz", hash = "sha256:961c518ea044268de0003a17953de3d4984623e9d47ad5424c100f6967e69a81", size = 673343, upload-time = "2024-09-27T22:56:16.585Z" } @@ -6001,8 +5944,7 @@ version = "0.2.1a0" source = { editable = "." } dependencies = [ { name = "aiofiles" }, - { name = "astropy", version = "6.1.7", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, - { name = "astropy", version = "7.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, + { name = "astropy" }, { name = "astroquery" }, { name = "deepmerge" }, { name = "fastapi", extra = ["all"] }, @@ -6045,12 +5987,13 @@ dev = [ { name = "pytest-mock" }, { name = "pytest-sugar" }, { name = "ruff" }, + { name = "setuptools" }, ] [package.metadata] requires-dist = [ { name = "aiofiles", specifier = ">=24.1.0" }, - { name = "astropy", specifier = ">=6.1.7" }, + { name = "astropy", specifier = ">=6.1.7,<7" }, { name = "astroquery", specifier = "<=0.4.7" }, { name = "deepmerge", specifier = ">=2.0" }, { name = "fastapi", extras = ["all"], specifier = ">=0.118.0" }, @@ -6086,6 +6029,7 @@ dev = [ { name = "pytest-mock", specifier = ">=3.15.1" }, { name = "pytest-sugar", specifier = ">=1.1.1" }, { name = "ruff", specifier = ">=0.13.3" }, + { name = "setuptools", specifier = ">=80.9.0" }, ] [[package]] @@ -6170,6 +6114,15 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/dd/44/4356cc64246ba7b2b920f7c97a85c3c52748e213e250b512ee8152eb559d/sentry_sdk-2.39.0-py2.py3-none-any.whl", hash = "sha256:ba655ca5e57b41569b18e2a5552cb3375209760a5d332cdd87c6c3f28f729602", size = 370851, upload-time = "2025-09-25T09:15:36.35Z" }, ] +[[package]] +name = "setuptools" +version = "80.9.0" +source = { registry = "https://pypi.org/simple" } +sdist = { url = "https://files.pythonhosted.org/packages/18/5d/3bf57dcd21979b887f014ea83c24ae194cfcd12b9e0fda66b957c69d1fca/setuptools-80.9.0.tar.gz", hash = "sha256:f36b47402ecde768dbfafc46e8e4207b4360c654f1f3bb84475f0a28628fb19c", size = 1319958, upload-time = "2025-05-27T00:56:51.443Z" } +wheels = [ + { url = "https://files.pythonhosted.org/packages/a3/dc/17031897dae0efacfea57dfd3a82fdd2a2aeb58e0ff71b77b87e44edc772/setuptools-80.9.0-py3-none-any.whl", hash = "sha256:062d34222ad13e0cc312a4c02d73f059e86a4acbfbdea8f8f76b28c99f306922", size = 1201486, upload-time = "2025-05-27T00:56:49.664Z" }, +] + [[package]] name = "shapely" version = "2.1.2" @@ -6483,8 +6436,7 @@ name = "specreduce" version = "1.4.1" source = { registry = "https://pypi.org/simple" } dependencies = [ - { name = "astropy", version = "6.1.7", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, - { name = "astropy", version = "7.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, + { name = "astropy" }, { name = "gwcs", version = "0.24.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, { name = "gwcs", version = "0.26.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, { name = "numpy" }, @@ -6502,8 +6454,7 @@ name = "spectral-cube" version = "0.6.6" source = { registry = "https://pypi.org/simple" } dependencies = [ - { name = "astropy", version = "6.1.7", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, - { name = "astropy", version = "7.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, + { name = "astropy" }, { name = "casa-formats-io" }, { name = "dask", extra = ["array"] }, { name = "joblib" }, @@ -6525,8 +6476,7 @@ dependencies = [ { name = "asdf" }, { name = "asdf-astropy", version = "0.7.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, { name = "asdf-astropy", version = "0.8.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, - { name = "astropy", version = "6.1.7", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, - { name = "astropy", version = "7.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, + { name = "astropy" }, { name = "gwcs", version = "0.24.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, { name = "gwcs", version = "0.26.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, { name = "ndcube" }, @@ -6728,7 +6678,7 @@ dependencies = [ { name = "asdf", marker = "python_full_version < '3.11'" }, { name = "asdf-astropy", version = "0.7.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, { name = "asdf-transform-schemas", marker = "python_full_version < '3.11'" }, - { name = "astropy", version = "6.1.7", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, + { name = "astropy", marker = "python_full_version < '3.11'" }, { name = "numpy", marker = "python_full_version < '3.11'" }, ] sdist = { url = "https://files.pythonhosted.org/packages/2d/4a/bc9a904040c923929cd4d49125b708723cb74536b65f07be7c5d4f95563e/stdatamodels-2.2.0.tar.gz", hash = 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"2025-09-23T19:18:39.287Z" } From 36d51955ac5d52ccb066090b42fb2833c1e12fc0 Mon Sep 17 00:00:00 2001 From: havok2063 Date: Tue, 7 Oct 2025 16:32:45 -0400 Subject: [PATCH 6/8] updating the readme --- README.md | 26 ++++++++++++++++---------- pyproject.toml | 33 +++++++++++++++++++++++++++++++-- 2 files changed, 47 insertions(+), 12 deletions(-) diff --git a/README.md b/README.md index dcdea4c..4ff6172 100644 --- a/README.md +++ b/README.md @@ -7,38 +7,44 @@ the SDSS API for delivering and accessing remote information. -This API is built using the [FastAPI](https://fastapi.tiangolo.com/) web server. Python depdendices are managed with [poetry](https://python-poetry.org/). +This API is built using the [FastAPI](https://fastapi.tiangolo.com/) web server. Python depdendices are managed with [uv](https://docs.astral.sh/uv/). + +See [uv Features](https://docs.astral.sh/uv/getting-started/features/) for what can be done with `uv`. See their [Project Guide](https://docs.astral.sh/uv/guides/projects/) for an intro to working on python projects. ## Installation +First, follow the [uv installation instructions](https://docs.astral.sh/uv/getting-started/installation/). + +It is recommended to work within an isolated virtual environment like `conda` or `venv`. You can create a uv venv with `uv venv valis --python 3.12`. See [uv Environments](https://docs.astral.sh/uv/pip/environments/) for more info. + ### Developer Install ``` git clone https://github.com/sdss/valis valis cd valis -poetry install +uv pip install ``` ### Solara Dependencies The default install does not install any of the Solara dependencies for Jdaviz and the SDSS DataView Explorer. To install these dependencies, run ``` -poetry install -E solara +uv pip install --extra solara ``` -### Updating Dependencies with Poetry -To update poetry itself, run +### Updating Dependencies with uv +To update uv itself, run ``` -poetry self update +uv self update ``` To update the package dependencies for `valis`, run ``` -poetry update [package] +uv lock --upgrade-package [package] ``` -This will update all the packages, or the specified `[package]`, resolve all dependencies, and update the `poetry.lock` file. +This will update all the packages, or the specified `[package]`, resolve all dependencies, and update the `uv.lock` file. -To install new packages and add them to the `pyproject.toml` and `poetry.lock` files, run +To install new packages and add them to the `pyproject.toml` and `uv.lock` files, run ``` -poetry install [package] +uv add [package] ``` ### Local Development diff --git a/pyproject.toml b/pyproject.toml index d24771a..3146508 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -70,6 +70,9 @@ dev = [ "setuptools>=80.9.0", ] +[tool.uv.sources] +sdss-solara = { git = "https://github.com/sdss/sdss_solara", rev = "main" } + [tool.setuptools] zip-safe = false package-dir = {"" = "python"} @@ -89,5 +92,31 @@ testpaths = [ "tests", ] -[tool.uv.sources] -sdss-solara = { git = "https://github.com/sdss/sdss_solara", rev = "main" } +[tool.coverage.run] +branch = true +include = ["python/valis/*"] +omit = [ + "*/__init__.py", +] + +[tool.coverage.report] +exclude_lines = [ +] + +[tool.ruff] +line-length = 120 +target-version = 'py312' +exclude = ["typings/"] + +[tool.ruff.lint] +select = ["E", "F", "I"] +unfixable = ["F841"] + +[tool.ruff.lint.isort] +known-first-party = ["valis"] +lines-after-imports = 2 +section-order = ["future", "standard-library", "typing", "third-party", "sdss", "first-party", "local-folder"] + +[tool.ruff.lint.isort.sections] +typing = ["typing"] +sdss = ["sdsstools"] From 89c467714c30a054a3d0befc637517e03ef5d671 Mon Sep 17 00:00:00 2001 From: havok2063 Date: Fri, 10 Oct 2025 16:06:23 -0400 Subject: [PATCH 7/8] cleanup --- .github/workflows/build.yml | 21 +-------------------- .github/workflows/docker.yml | 1 - 2 files changed, 1 insertion(+), 21 deletions(-) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index fa6ff4d..adc0e40 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -19,11 +19,6 @@ jobs: with: python-version: "3.12" - # - name: Install Poetry - # uses: snok/install-poetry@v1 - # with: - # virtualenvs-path: ~/.virtualenvs - - name: Install uv uses: astral-sh/setup-uv@v6 with: @@ -31,23 +26,9 @@ jobs: version: "0.8.24" enable-cache: true - # - name: Cache Poetry virtualenv - # uses: actions/cache@v4 - # id: cache - # with: - # path: ~/.virtualenvs - # key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - # restore-keys: | - # venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - - # - name: Install dependencies - # run: | - # uv pip install # --no-interaction --no-ansi -vvv # add this for local debugs with "act" - # if: steps.cache.outputs.cache-hit != 'true' - - name: Install the project run: uv sync --locked --all-extras --dev - name: Test with pytest run: | - uv run pytest tests \ No newline at end of file + uv run pytest tests diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml index b8b1e64..915899e 100644 --- a/.github/workflows/docker.yml +++ b/.github/workflows/docker.yml @@ -6,7 +6,6 @@ on: - '[0-9]+.[0-9]+.[0-9]+' # Exclude pre-releases branches: - main - - py12bump workflow_dispatch: jobs: From b5d28b29410373715131ef5e6c9733bef93e9c5a Mon Sep 17 00:00:00 2001 From: havok2063 Date: Fri, 10 Oct 2025 16:11:51 -0400 Subject: [PATCH 8/8] more cleanup --- Dockerfile | 10 ---------- Dockerfile.dev | 26 +++++++++++++++++--------- 2 files changed, 17 insertions(+), 19 deletions(-) diff --git a/Dockerfile b/Dockerfile index f182276..cb02610 100644 --- a/Dockerfile +++ b/Dockerfile @@ -40,18 +40,10 @@ ENV PIP_FIND_LINKS=https://github.com/ddelange/vaex/releases/expanded_assets/cor RUN pip install --force-reinstall vaex ENV PIP_FIND_LINKS= -# # Install poetry and project dependencies -# RUN pip install poetry && \ -# poetry config virtualenvs.create false && \ -# poetry install -E solara --no-root && \ -# rm -rf ~/.cache - # Installing uv and then project dependencies RUN pip install uv RUN uv venv /app/venv # make venv RUN --mount=type=cache,target=/root/.cache/uv \ - #--mount=type=bind,source=uv.lock,target=uv.lock \ - #--mount=type=bind,source=pyproject.toml,target=pyproject.toml \ uv sync --frozen --no-install-project --no-dev --extra solara @@ -60,7 +52,6 @@ FROM dep-stage AS dev-stage # Copy the main project files over and install COPY ./ ./ -#RUN poetry install -E solara --only main RUN --mount=type=cache,target=/root/.cache/uv \ uv sync --frozen --no-dev --extra solara @@ -88,5 +79,4 @@ LABEL org.opencontainers.image.description="valis production image" EXPOSE 8000 # Start the FastAPI app for production -#CMD ["poetry", "run", "gunicorn", "-c", "python/valis/wsgi_conf.py", "valis.wsgi:app"] CMD ["uv", "run", "gunicorn", "-c", "python/valis/wsgi_conf.py", "valis.wsgi:app"] diff --git a/Dockerfile.dev b/Dockerfile.dev index 3c2e47e..bdff2f7 100644 --- a/Dockerfile.dev +++ b/Dockerfile.dev @@ -1,31 +1,39 @@ # Stage 1: Development stage for Python dependencies -FROM python:3.10-slim as dep-stage +FROM python:3.12-slim as dep-stage # Set up app dir WORKDIR /tmp # Copy project files over -COPY ./pyproject.toml ./poetry.lock ./ +COPY ./pyproject.toml ./uv.lock ./ -# Install build-essential package +# Install system prereq packages RUN apt-get update && \ apt-get install -y \ build-essential \ + git \ + # these are for h5py in sdss_explorer + curl libhdf5-dev pkg-config \ + # these are for vaex + gcc g++ libboost-all-dev \ + libffi-dev python3-dev libxml2-dev libxslt-dev \ + libpq-dev zlib1g-dev \ && apt-get clean \ && rm -rf /var/lib/apt/lists/* -# Install poetry and project dependencies -RUN pip install poetry && \ - poetry config virtualenvs.create false && \ - poetry install -E solara --no-root && \ - rm -rf ~/.cache +# Installing uv and then project dependencies +RUN pip install uv +RUN uv venv /app/venv # make venv +RUN --mount=type=cache,target=/root/.cache/uv \ + uv sync --frozen --no-install-project --no-dev --extra solara # Stage 2: Development stage for the project FROM dep-stage as dev-stage # Copy the main project files over and install COPY ./ ./ -RUN poetry install -E solara --only main +RUN --mount=type=cache,target=/root/.cache/uv \ + uv sync --frozen --no-dev --extra solara # setting environment variables # these can be manually overridden