Add linear mixed effects model to DE interface #614
Description
Description of feature
Description of feature
They can be used to either perform tests on all cells, including the sample as random effect, or on pseudobulk when there are designs that require random effects.
Methods
Model specification
- Neither formulaic nor patsy currently allow for random effects. There's a PR open to add support Add support for mixed effects. matthewwardrop/formulaic#34
- formulae allows specifying random effects: https://github.com/bambinos/formulae
- Alternatively, it could be possible to specify two formulas, one for fixed and one for random effects.
Migrated from scverse/multi-condition-comparisions#20