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shinyAAVieweR - Visualize AAV Insertion Fitness Maps in the web browser

Description

This is an adaptation of shinyNGLVieweR developed by Niels van der Velden to display AAV VP1 Domain Insertion Fitness maps. The UI is based on the NGLVieweR package, which is build on top of the NGL.js JavaScript library. It can be used to visualize and interact with protein data bank (PDB) and structural files directly in the web browser.

Functionality

With the application it is possible to:

  • Display the structure and surface in different representations
  • Show the sequence and select residues to show on the structure
  • Make custom selections and labels
  • Animate the structure in spin and rotate mode
  • Make snapshots

Usage

Load the 'app.R' file. Use the green 'Run App' button on the top right to run the app locally. To deploy, run: rsconnect::deployApp()