Commit 8932a79
Submodule libsbml_source updated 82 files
- VERSION.txt+1-1
- configure+9-9
- src/bindings/matlab/OutputSBML.cpp+4-1
- src/sbml/Model.cpp+1-1
- src/sbml/SBase.cpp+1-1
- src/sbml/SpeciesReference.cpp+1-1
- src/sbml/annotation/ModelHistory.cpp+62-10
- src/sbml/annotation/ModelHistory.h+12
- src/sbml/annotation/RDFAnnotationParser.cpp+8-2
- src/sbml/annotation/RDFAnnotationParser.h+1-1
- src/sbml/annotation/test/TestRDFAnnotation2.cpp+2
- src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp+14-14
- src/sbml/annotation/test/TestValidation.cpp+1-2
- src/sbml/annotation/test/test-data/annotationNested-l3v1.xml-3
- src/sbml/common/libsbml-version.h+1-1
- src/sbml/packages/fbc/extension/FbcExtension.cpp+6-6
- src/sbml/packages/fbc/extension/FbcExtension.h+11-11
- src/sbml/packages/fbc/extension/FbcModelPlugin.cpp+16
- src/sbml/packages/fbc/extension/FbcModelPlugin.h+36
- src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp+1-1
- src/sbml/packages/fbc/sbml/FluxObjective.cpp+7-7
- src/sbml/packages/fbc/sbml/FluxObjective.h+6-6
- src/sbml/packages/fbc/sbml/KeyValuePair.cpp+1-1
- src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp+16-16
- src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h+6-6
- src/sbml/packages/spatial/extension/SpatialExtension.cpp+4-6
- src/sbml/packages/spatial/extension/SpatialExtension.h+11-20
- src/sbml/packages/spatial/sbml/AdvectionCoefficient.cpp+1-1
- src/sbml/packages/spatial/sbml/BoundaryCondition.h-22
- src/sbml/packages/spatial/sbml/CSGSetOperator.cpp+354
- src/sbml/packages/spatial/sbml/CSGSetOperator.h+243
- src/sbml/packages/spatial/sbml/DiffusionCoefficient.cpp+1-1
- src/sbml/packages/spatial/validator/SpatialSBMLError.h+8-5
- src/sbml/packages/spatial/validator/SpatialSBMLErrorTable.h+77-44
- src/sbml/packages/spatial/validator/SpatialUniqueBoundaryConditionsCheck.cpp+1-83
- src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraints.cpp+157-7
- src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraintsDeclared.cxx+8-2
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223205-fail-01-01.xml+1-1
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223205-fail-01-02.xml+1-1
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223250-fail-01-01.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223250-fail-01-02.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223250-pass-00-01.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-01.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-02.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-03.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-04.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-05.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-06.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-pass-00-01.xml+1-1
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-pass-00-02.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223252-fail-01-01.xml+47
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223252-fail-01-02.xml+48
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223252-fail-01-03.xml+45
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223252-pass-00-01.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-01.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-02.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-03.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-04.xml+51
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-05.xml+51
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-06.xml+51
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-pass-00-01.xml+46
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-pass-00-02.xml+51
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223404-fail-01-02.xml+13-1
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223404-pass-00-02.xml+3-2
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223404-pass-00-03.xml+80
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223458-fail-01-01.xml+14-5
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223458-pass-00-01.xml+4-3
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223504-pass-00-02.xml+3-2
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223504-pass-00-03.xml+3-2
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223504-pass-00-04.xml+8-4
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223552-fail-01-01.xml+2-2
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223552-pass-00-01.xml+2-2
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-08.xml-79
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-09.xml-85
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-10.xml-85
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-11.xml-79
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-12.xml-79
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-13.xml-79
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-16.xml-85
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-17.xml-85
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-18.xml-85
- src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-02-19.xml-76
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