diff --git a/.gitignore b/.gitignore index 4f7351f..9154245 100644 --- a/.gitignore +++ b/.gitignore @@ -1,18 +1,142 @@ -# Ignore these files -*.txt -*scratch.* -vocabulary_data/dev_*/*.csv -vocabulary_data/**/*.txt -vocabulary_data/**/test*.sql -vocabulary_data/**/_test*.sql -vocabulary_data/**/*.html -vocabulary_data/**/download/ -vocabulary_data/**/log -backup/ -build/ -.gradle/ -.idea/** -_/ - -# But not these -!vocabulary_data/dev_*/*result/*.csv \ No newline at end of file +# Created by .ignore support plugin (hsz.mobi) +### Eclipse template + +.metadata +bin/ +tmp/ +*.tmp +*.bak +*.swp +*~.nib +local.properties +.settings/ +.loadpath +.recommenders + +# Eclipse Core +.project + +# External tool builders +.externalToolBuilders/ + +# Locally stored "Eclipse launch configurations" +*.launch + +# PyDev specific (Python IDE for Eclipse) +*.pydevproject + +# CDT-specific (C/C++ Development Tooling) +.cproject + +# JDT-specific (Eclipse Java Development Tools) +.classpath + +# Java annotation processor (APT) +.factorypath + +# PDT-specific (PHP Development Tools) +.buildpath + +# sbteclipse plugin +.target + +# Tern plugin +.tern-project + +# TeXlipse plugin +.texlipse + +# STS (Spring Tool Suite) +.springBeans + +# Code Recommenders +.recommenders/ + +# Scala IDE specific (Scala & Java development for Eclipse) +.cache-main +.scala_dependencies +.worksheet +### Java template +# Compiled class file +*.class + +# Log file +*.log + +# BlueJ files +*.ctxt + +# Mobile Tools for Java (J2ME) +.mtj.tmp/ + +# Package Files # +*.jar +*.war +*.ear +*.zip +*.tar.gz +*.rar + +# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml +hs_err_pid* +### Gradle template +.gradle +/build/ + +# Ignore Gradle GUI config +gradle-app.setting + +# Avoid ignoring Gradle wrapper jar file (.jar files are usually ignored) +!gradle-wrapper.jar + +# Cache of project +.gradletasknamecache + +# # Work around https://youtrack.jetbrains.com/issue/IDEA-116898 +# gradle/wrapper/gradle-wrapper.properties +### JetBrains template +# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio and Webstorm +# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839 + +# User-specific stuff: +.idea/**/workspace.xml +.idea/**/tasks.xml +.idea/dictionaries + +# Sensitive or high-churn files: +.idea/**/dataSources/ +.idea/**/dataSources.ids +.idea/**/dataSources.xml +.idea/**/dataSources.local.xml +.idea/**/sqlDataSources.xml +.idea/**/dynamic.xml +.idea/**/uiDesigner.xml + +# Gradle: +.idea/**/gradle.xml +.idea/**/libraries + +# Mongo Explorer plugin: +.idea/**/mongoSettings.xml + +## File-based project format: +*.iws + +## Plugin-specific files: + +# IntelliJ +/out/ + +# mpeltonen/sbt-idea plugin +.idea_modules/ + +# JIRA plugin +atlassian-ide-plugin.xml + +# Crashlytics plugin (for Android Studio and IntelliJ) +com_crashlytics_export_strings.xml +crashlytics.properties +crashlytics-build.properties +fabric.properties + +/.idea/ diff --git a/.idea/gradle.xml b/.idea/gradle.xml index 77e9972..804ea62 100644 --- a/.idea/gradle.xml +++ b/.idea/gradle.xml @@ -5,12 +5,16 @@ + diff --git a/.idea/misc.xml b/.idea/misc.xml index c3fc748..bfe6512 100644 --- a/.idea/misc.xml +++ b/.idea/misc.xml @@ -38,7 +38,7 @@ - + \ No newline at end of file diff --git a/.idea/modules.xml b/.idea/modules.xml index dc521ca..6394002 100644 --- a/.idea/modules.xml +++ b/.idea/modules.xml @@ -2,7 +2,18 @@ - + + + + + + + + + + + + \ No newline at end of file diff --git a/.idea/modules/GradleProject.iml b/.idea/modules/GradleProject.iml deleted file mode 100644 index c38173a..0000000 --- a/.idea/modules/GradleProject.iml +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - - - - - - - \ No newline at end of file diff --git a/.idea/vcs.xml b/.idea/vcs.xml index 35eb1dd..94a25f7 100644 --- a/.idea/vcs.xml +++ b/.idea/vcs.xml @@ -1,6 +1,6 @@ - + \ No newline at end of file diff --git a/Update_HCPCS.gradle b/HSPCS/Update_HCPCS.gradle similarity index 98% rename from Update_HCPCS.gradle rename to HSPCS/Update_HCPCS.gradle index 78c9575..b8feb83 100644 --- a/Update_HCPCS.gradle +++ b/HSPCS/Update_HCPCS.gradle @@ -5,33 +5,6 @@ **************************** */ -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' -apply plugin: 'idea' - -sourceCompatibility = 1.8 - -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - } -} - -repositories { - mavenLocal() - mavenCentral() -} -dependencies { - compile 'org.apache.poi:poi:3.9' - compile 'org.apache.poi:poi-ooxml:3.9' -} import groovy.io.FileType import org.apache.poi.ss.usermodel.Cell diff --git a/Update_HCPCS.properties b/HSPCS/Update_HCPCS.properties similarity index 100% rename from Update_HCPCS.properties rename to HSPCS/Update_HCPCS.properties diff --git a/Update_HCPCS_Part1.gradle b/HSPCS/Update_HCPCS_Part1.gradle similarity index 97% rename from Update_HCPCS_Part1.gradle rename to HSPCS/Update_HCPCS_Part1.gradle index a8f6c5d..aa424cf 100644 --- a/Update_HCPCS_Part1.gradle +++ b/HSPCS/Update_HCPCS_Part1.gradle @@ -5,37 +5,10 @@ **************************** */ -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 - -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - classpath 'javax.mail:javax.mail-api:1.5.5' - } -} - -repositories { - mavenLocal() - mavenCentral() -} - configurations { mail } -dependencies { - mail 'org.apache.ant:ant-javamail:1.8.1' -} import groovy.io.FileType import org.apache.poi.ss.usermodel.Cell @@ -512,17 +485,14 @@ task loadStage(dependsOn: importData, description: project.properties['loadStage def logFile = "${tempDir.getPath()}/${project.properties['loadStage.logFileName']}" def streamLogFile = "${tempDir.getPath()}/${project.properties['loadStage.streamLogFileName']}" def streamErrorFile = "${tempDir.getPath()}/${project.properties['loadStage.streamErrFileName']}" - def logFileProcedureDrug = "${tempDir.getPath()}/${project.properties['loadStage.logProcedureDrugFileName']}" def db = [un: project.properties['db.userName'], pw: project.properties['db.password'], tns: project.properties['db.tnsName'], sqlfile: "${project.properties['basePath']}/${project.properties['loadStage.sqlFileName']}", - logfile: logFile, - contextPath: "${project.properties['basePath']}", - logfileProcedureDrug: logFileProcedureDrug] + logfile: logFile] def sout = new StringBuilderWrapper(), serr = new StringBuilderWrapper() - def sqlplus= """sqlplus ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} ${db.logfile} ${db.contextPath} ${db.logfileProcedureDrug}""".execute() + def sqlplus= """sqlplus ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} ${db.logfile}""".execute() sqlplus.consumeProcessOutput(sout, serr) sqlplus.waitFor() diff --git a/Update_HCPCS_Part1.properties b/HSPCS/Update_HCPCS_Part1.properties similarity index 97% rename from Update_HCPCS_Part1.properties rename to HSPCS/Update_HCPCS_Part1.properties index 80feea1..928c8a4 100644 --- a/Update_HCPCS_Part1.properties +++ b/HSPCS/Update_HCPCS_Part1.properties @@ -8,7 +8,6 @@ loadStage.description=Load Stage Part1 #loadStage.sqlFileName=mock\\03.mock_load_stage_part1.sql loadStage.sqlFileName=03.load_stage_part1.sql loadStage.logFileName=load_stage_part1.log -loadStage.logProcedureDrugFileName=procedure_drug.log loadStage.streamLogFileName=load_stage_stream_part1.log loadStage.streamErrFileName=load_stage_stream_part1.err diff --git a/Update_HCPCS_Part2.gradle b/HSPCS/Update_HCPCS_Part2.gradle similarity index 93% rename from Update_HCPCS_Part2.gradle rename to HSPCS/Update_HCPCS_Part2.gradle index c81172f..0c6d6ba 100644 --- a/Update_HCPCS_Part2.gradle +++ b/HSPCS/Update_HCPCS_Part2.gradle @@ -5,33 +5,12 @@ **************************** */ -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 - -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - classpath group: 'commons-io', name: 'commons-io', version: '2.5' - - } -} - import groovy.io.FileType import org.apache.poi.ss.usermodel.Cell import org.apache.poi.ss.usermodel.Row import org.apache.poi.ss.usermodel.Workbook import org.apache.poi.ss.usermodel.WorkbookFactory import org.apache.poi.ss.usermodel.Sheet -import org.apache.commons.io.FileUtils /* task compileOne(type: JavaCompile) { @@ -189,25 +168,17 @@ task importManualTable (dependsOn: prepareManualTable, description: project.prop println '* *' println '*****************************************************' + println "Logs are written to: ${tempDir.getPath()}" + // Start action checkpoint def timeStart = System.currentTimeMillis() - def logPath = "${project.properties['basePath']}/${project.properties['importManualTable.logPath']}" - def folder = new File(logPath) - if (!folder.exists()) { - folder.mkdirs() - println "Log directory is created: ${folder.getPath()}" - } else { - FileUtils.cleanDirectory(folder) - println "Log directory is cleaned: ${folder.getPath()}" - } - def dataFile = "${project.properties['basePath']}/${project.properties['manualTableFileName']}" - def logFile = "${logPath}/${project.properties['importManualTable.logFileName']}" - def discardFile = "${logPath}/${project.properties['importManualTable.discardFileName']}" - def badFile = "${logPath}/${project.properties['importManualTable.badFileName']}" - def streamLogFile = "${logPath}/${project.properties['importManualTable.streamLogFileName']}" - def streamErrorFile = "${logPath}/${project.properties['importManualTable.streamErrFileName']}" + def logFile = "${tempDir.getPath()}/${project.properties['importManualTable.logFileName']}" + def discardFile = "${tempDir.getPath()}/${project.properties['importManualTable.discardFileName']}" + def badFile = "${tempDir.getPath()}/${project.properties['importManualTable.badFileName']}" + def streamLogFile = "${tempDir.getPath()}/${project.properties['importManualTable.streamLogFileName']}" + def streamErrorFile = "${tempDir.getPath()}/${project.properties['importManualTable.streamErrFileName']}" def bosOut = new ByteArrayOutputStream(), bosErr = new ByteArrayOutputStream() def sout = new StringBuilderWrapper(), serr = new StringBuilderWrapper() @@ -328,6 +299,7 @@ task loadStage(dependsOn: applyManualTable, description: project.properties['loa def logFile = "${tempDir.getPath()}/${project.properties['loadStage.logFileName']}" def streamLogFile = "${tempDir.getPath()}/${project.properties['loadStage.streamLogFileName']}" def streamErrorFile = "${tempDir.getPath()}/${project.properties['loadStage.streamErrFileName']}" + def logFileProcedureDrug = "${tempDir.getPath()}/${project.properties['loadStage.logProcedureDrugFileName']}" def logFileMapDrugVocabulary = "${tempDir.getPath()}/${project.properties['loadStage.logMapDrugVocabularyFileName']}" def db = [un: project.properties['db.userName'], @@ -336,9 +308,10 @@ task loadStage(dependsOn: applyManualTable, description: project.properties['loa sqlfile: "${project.properties['basePath']}/${project.properties['loadStage.sqlFileName']}", logfile: logFile, contextPath: "${project.properties['basePath']}", + logfileProcedureDrug: logFileProcedureDrug, logfileMapDrugVocabulary: logFileMapDrugVocabulary] def sout = new StringBuilderWrapper(), serr = new StringBuilderWrapper() - def sqlplus= """sqlplus ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} ${db.logfile} ${db.contextPath} ${db.logfileMapDrugVocabulary}""".execute() + def sqlplus= """sqlplus ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} ${db.logfile} ${db.contextPath} ${db.logfileProcedureDrug} ${db.logfileMapDrugVocabulary}""".execute() sqlplus.consumeProcessOutput(sout, serr) sqlplus.waitFor() diff --git a/Update_HCPCS_Part2.properties b/HSPCS/Update_HCPCS_Part2.properties similarity index 93% rename from Update_HCPCS_Part2.properties rename to HSPCS/Update_HCPCS_Part2.properties index 90d98db..5137648 100644 --- a/Update_HCPCS_Part2.properties +++ b/HSPCS/Update_HCPCS_Part2.properties @@ -16,7 +16,6 @@ prepareManualTable.manualWorkResultPath=manual_work_result importManualTable.description=Import Manual Table #importManualTable.controlFileName=mock/mock_manual_table_import.ctl importManualTable.controlFileName=manual_table_import.ctl -importManualTable.logPath=log importManualTable.logFileName=import_manual_table.log importManualTable.discardFileName=import_manual_table.dsc importManualTable.badFileName=import_manual_table.bad @@ -36,6 +35,7 @@ loadStage.description=Load Stage Part2 #loadStage.sqlFileName=mock\\03.mock_load_stage_part2.sql loadStage.sqlFileName=03.load_stage_part2.sql loadStage.logFileName=load_stage_part2.log -loadStage.logMapDrugVocabularyFileName=map_drug_vocabulary.log +loadStage.logProcedureDrugFileName=procedure_drug_part2.log +loadStage.logMapDrugVocabularyFileName=map_drug_vocabulary_part2.log loadStage.streamLogFileName=load_stage_part2_stream.log loadStage.streamErrFileName=load_stage_part2_stream.err \ No newline at end of file diff --git a/HSPCS/build.gradle b/HSPCS/build.gradle new file mode 100644 index 0000000..e8e8199 --- /dev/null +++ b/HSPCS/build.gradle @@ -0,0 +1,30 @@ +group 'com.sci.vocabulary' +version '1.0-SNAPSHOT' + +apply plugin: 'groovy' +apply plugin: 'java' + +sourceCompatibility = 1.8 + +repositories { + mavenCentral() + mavenLocal() +} + +dependencies { + compile 'org.codehaus.groovy:groovy-all:2.3.11' + testCompile group: 'junit', name: 'junit', version: '4.11' + testCompile group: 'junit', name: 'junit', version: '4.12' + compile 'org.apache.ant:ant-javamail:1.8.1' +} + +buildscript { + repositories { + mavenLocal() + mavenCentral() + } + dependencies { + classpath 'org.apache.poi:poi:3.9' + classpath 'org.apache.poi:poi-ooxml:3.9' + } +} diff --git a/vocabulary_data/dev_hcpcs/00.fast_recreate_schema.sql b/HSPCS/dev_hcpcs/00.fast_recreate_schema.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/00.fast_recreate_schema.sql rename to HSPCS/dev_hcpcs/00.fast_recreate_schema.sql diff --git a/vocabulary_data/dev_hcpcs/01.create_source_tables.sql b/HSPCS/dev_hcpcs/01.create_source_tables.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/01.create_source_tables.sql rename to HSPCS/dev_hcpcs/01.create_source_tables.sql diff --git a/vocabulary_data/dev_hcpcs/02.import.bat b/HSPCS/dev_hcpcs/02.import.bat similarity index 100% rename from vocabulary_data/dev_hcpcs/02.import.bat rename to HSPCS/dev_hcpcs/02.import.bat diff --git a/vocabulary_data/dev_hcpcs/03.load_stage.sql b/HSPCS/dev_hcpcs/03.load_stage.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/03.load_stage.sql rename to HSPCS/dev_hcpcs/03.load_stage.sql diff --git a/vocabulary_data/dev_hcpcs/03.load_stage_part1.sql b/HSPCS/dev_hcpcs/03.load_stage_part1.sql similarity index 99% rename from vocabulary_data/dev_hcpcs/03.load_stage_part1.sql rename to HSPCS/dev_hcpcs/03.load_stage_part1.sql index 3e90625..a64a8bb 100644 --- a/vocabulary_data/dev_hcpcs/03.load_stage_part1.sql +++ b/HSPCS/dev_hcpcs/03.load_stage_part1.sql @@ -760,15 +760,6 @@ INSERT /*+ APPEND */ INTO concept_stage WHERE vocabulary_id = 'HCPCS' AND concept_class_id = 'HCPCS Class'; COMMIT; ---7 Run HCPCS/procedure_drug.sql. This will create all the input files for MapDrugVocabulary.sql -PROMPT *** -PROMPT * 7 Run HCPCS/procedure_drug.sql. This will create all the input files for MapDrugVocabulary.sql -PROMPT *** -@&2/procedure_drug.sql '&3' -PROMPT *** -PROMPT * 7 Run of HCPCS/procedure_drug.sql is done... -PROMPT *** - SET sqlbl off SPOOL OFF EXIT \ No newline at end of file diff --git a/vocabulary_data/dev_hcpcs/03.load_stage_part2.sql b/HSPCS/dev_hcpcs/03.load_stage_part2.sql similarity index 94% rename from vocabulary_data/dev_hcpcs/03.load_stage_part2.sql rename to HSPCS/dev_hcpcs/03.load_stage_part2.sql index bf0190f..f4dd4e1 100644 --- a/vocabulary_data/dev_hcpcs/03.load_stage_part2.sql +++ b/HSPCS/dev_hcpcs/03.load_stage_part2.sql @@ -29,11 +29,38 @@ WHENEVER SQLERROR EXIT SQL.SQLCODE */ SPOOL &1 +/* Clean up from last unsuccessful load stage run, to avoid build process errors */ +PROMPT Clean up from last unsuccessful load stage run, to avoid build process errors... +DECLARE + TYPE TStringArray IS TABLE OF VARCHAR2(255); + t_names TStringArray := TStringArray('t_domains'); + l_cnt NUMBER; + l_str VARCHAR2(255); +BEGIN + FOR i in t_names.FIRST..t_names.LAST LOOP + l_str := t_names(i); + SELECT COUNT(1) INTO l_cnt FROM user_tables WHERE UPPER(table_name) = UPPER(l_str); + IF l_cnt > 0 THEN + EXECUTE IMMEDIATE 'DROP TABLE ' || l_str; + END IF; + END LOOP; +END; +/ + +--7 Run HCPCS/procedure_drug.sql. This will create all the input files for MapDrugVocabulary.sql +PROMPT *** +PROMPT * 7 Run HCPCS/procedure_drug.sql. This will create all the input files for MapDrugVocabulary.sql +PROMPT *** +@&2/procedure_drug.sql '&3' +PROMPT *** +PROMPT * 7 Run of HCPCS/procedure_drug.sql is done... +PROMPT *** + --8 Run the generic working/MapDrugVocabulary.sql. This will produce a concept_relationship_stage with HCPCS to RxNorm relatoinships PROMPT *** PROMPT * 8 Run the generic working/MapDrugVocabulary.sql. This will produce a concept_relationship_stage with HCPCS to RxNorm relatoinships PROMPT *** -@&2/MapDrugVocabulary.sql '&3' +@&2/MapDrugVocabulary.sql '&4' PROMPT *** PROMPT * 8 Run the generic working/MapDrugVocabulary.sql is done... PROMPT *** diff --git a/vocabulary_data/dev_hcpcs/04.generic_update.sql b/HSPCS/dev_hcpcs/04.generic_update.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/04.generic_update.sql rename to HSPCS/dev_hcpcs/04.generic_update.sql diff --git a/vocabulary_data/dev_hcpcs/05.update_results.sql b/HSPCS/dev_hcpcs/05.update_results.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/05.update_results.sql rename to HSPCS/dev_hcpcs/05.update_results.sql diff --git a/vocabulary_data/dev_hcpcs/ANWEB_V2.ctl b/HSPCS/dev_hcpcs/ANWEB_V2.ctl similarity index 100% rename from vocabulary_data/dev_hcpcs/ANWEB_V2.ctl rename to HSPCS/dev_hcpcs/ANWEB_V2.ctl diff --git a/vocabulary_data/dev_hcpcs/MapDrugVocabulary.sql b/HSPCS/dev_hcpcs/MapDrugVocabulary.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/MapDrugVocabulary.sql rename to HSPCS/dev_hcpcs/MapDrugVocabulary.sql diff --git a/vocabulary_data/dev_hcpcs/_backup/manual_table_import.ctl b/HSPCS/dev_hcpcs/_backup/manual_table_import.ctl similarity index 100% rename from vocabulary_data/dev_hcpcs/_backup/manual_table_import.ctl rename to HSPCS/dev_hcpcs/_backup/manual_table_import.ctl diff --git a/vocabulary_data/dev_hcpcs/manual_table_apply.sql b/HSPCS/dev_hcpcs/manual_table_apply.sql similarity index 61% rename from vocabulary_data/dev_hcpcs/manual_table_apply.sql rename to HSPCS/dev_hcpcs/manual_table_apply.sql index bff6a0d..37463b9 100644 --- a/vocabulary_data/dev_hcpcs/manual_table_apply.sql +++ b/HSPCS/dev_hcpcs/manual_table_apply.sql @@ -9,22 +9,9 @@ WHENEVER SQLERROR EXIT SQL.SQLCODE */ SPOOL &1 --- Delete sysnonym for '&2' table if exists -PROMPT Delete synonym for '&2' table if exists... -BEGIN - EXECUTE IMMEDIATE 'DROP SYNONYM &2'; -EXCEPTION WHEN OTHERS THEN NULL; -END; -/ -COMMIT; - --- Create synonym for '&2' table -PROMPT Create synonym for '&2' table... -CREATE SYNONYM &2 FOR DEV_HCPCS.&2; - PROMPT Applying &2 data to RELATIONSHIP_TO_CONCEPT table... MERGE INTO RELATIONSHIP_TO_CONCEPT r2c - USING (SELECT DISTINCT CONCEPT_CODE_1, CONCEPT_ID_2, PRECEDENCE, CONVERSION_FACTOR FROM &2) mt + USING (SELECT DISTINCT CONCEPT_CODE_1, CONCEPT_ID_2, PRECEDENCE, CONVERSION_FACTOR FROM MANUAL_TABLE) mt ON (r2c.CONCEPT_CODE_1 = mt.CONCEPT_CODE_1 AND r2c.CONCEPT_ID_2 = mt.CONCEPT_ID_2) WHEN MATCHED THEN UPDATE SET r2c.PRECEDENCE = mt.PRECEDENCE, r2c.CONVERSION_FACTOR = mt.CONVERSION_FACTOR @@ -34,14 +21,5 @@ MERGE INTO RELATIONSHIP_TO_CONCEPT r2c COMMIT; --- Delete synonym for '&2' table as unneeded -PROMPT Delete synonym for '&2' table as unneeded... -BEGIN - EXECUTE IMMEDIATE 'DROP SYNONYM &2'; -EXCEPTION WHEN OTHERS THEN NULL; -END; -/ -COMMIT; - SPOOL OFF EXIT \ No newline at end of file diff --git a/vocabulary_data/dev_hcpcs/manual_table_create.sql b/HSPCS/dev_hcpcs/manual_table_create.sql similarity index 83% rename from vocabulary_data/dev_hcpcs/manual_table_create.sql rename to HSPCS/dev_hcpcs/manual_table_create.sql index 30381b7..a267c75 100644 --- a/vocabulary_data/dev_hcpcs/manual_table_create.sql +++ b/HSPCS/dev_hcpcs/manual_table_create.sql @@ -48,17 +48,7 @@ NOLOGGING PROMPT Create '&2' from RELATIONSHIP_TO_CONCEPT table... -- truncate table &2; -INSERT INTO &2 (CONCEPT_CODE_1, - CONCEPT_NAME_1, - CONCEPT_ID_2, - CONCEPT_NAME_2, - DOMAIN_ID, - VOCABULARY_ID, - INVALID_REASON, - VALID_START_DATE, - VALID_END_DATE, - PRECEDENCE, - CONVERSION_FACTOR) +INSERT INTO &2 (CONCEPT_CODE_1, CONCEPT_NAME_1, CONCEPT_ID_2, CONCEPT_NAME_2, DOMAIN_ID, VOCABULARY_ID, INVALID_REASON, VALID_START_DATE, VALID_END_DATE, PRECEDENCE, CONVERSION_FACTOR) SELECT r2c.CONCEPT_CODE_1, c1.CONCEPT_NAME AS CONCEPT_NAME_1, r2c.CONCEPT_ID_2, diff --git a/HSPCS/dev_hcpcs/manual_table_extract.sql b/HSPCS/dev_hcpcs/manual_table_extract.sql new file mode 100644 index 0000000..1a0718d --- /dev/null +++ b/HSPCS/dev_hcpcs/manual_table_extract.sql @@ -0,0 +1,41 @@ +SET LINESIZE 1024 +SET ECHO OFF +SET HEADING OFF +SET FEEDBACK OFF +SET VERIFY OFF +SET NEWPAGE NONE +-- SET COLSEP ';' + +COLUMN exp_file_name new_val exp_file_name +SELECT '&1'|| '/' || '&2' AS exp_file_name FROM dual; +SPOOL &&exp_file_name + +SELECT 'CONCEPT_CODE_1' || ',' + || 'CONCEPT_NAME_1' || ',' + || 'CONCEPT_ID_2' || ',' + || 'CONCEPT_NAME_2' || ',' + || 'DOMAIN_ID' || ',' + || 'VOCABULARY_ID' || ',' + || 'INVALID_REASON' || ',' + || 'VALID_START_DATE' || ',' + || 'VALID_END_DATE' || ',' + || 'PRECEDENCE' || ',' + || 'CONVERSION_FACTOR' +FROM DUAL +UNION ALL +SELECT '"' || CONCEPT_CODE_1 || '",' + || '"' || CONCEPT_NAME_1 || '",' + || '"' || CONCEPT_ID_2 || '",' + || '"' || CONCEPT_NAME_2 || '",' + || '"' || DOMAIN_ID || '",' + || '"' || VOCABULARY_ID || '",' + || '"' || INVALID_REASON || '",' + || '"' || TO_CHAR(VALID_START_DATE, 'YYYY-MM-DD HH24:MI:SS') || '",' + || '"' || TO_CHAR(VALID_END_DATE, 'YYYY-MM-DD HH24:MI:SS') || '",' + || '"' || PRECEDENCE || '",' + || '"' || CONVERSION_FACTOR || '"' +FROM &3 +; + +SPOOL OFF +EXIT \ No newline at end of file diff --git a/HSPCS/dev_hcpcs/manual_table_import.ctl b/HSPCS/dev_hcpcs/manual_table_import.ctl new file mode 100644 index 0000000..fa81e12 --- /dev/null +++ b/HSPCS/dev_hcpcs/manual_table_import.ctl @@ -0,0 +1,21 @@ +OPTIONS (errors=0, direct=true, skip=1) +LOAD DATA +INFILE 'manual_table_data.csv' +APPEND +INTO TABLE MANUAL_TABLE +FIELDS TERMINATED BY ',' +OPTIONALLY ENCLOSED BY '"' +TRAILING NULLCOLS ( +"CONCEPT_CODE_1", +"CONCEPT_NAME_1", +"CONCEPT_ID_2", +"CONCEPT_NAME_2", +"DOMAIN_ID", +"VOCABULARY_ID", +"INVALID_REASON", +"VALID_START_DATE" DATE "MM/DD/YYYY HH24:MI:SS", +"VALID_END_DATE" DATE "MM/DD/YYYY HH24:MI:SS", +"PRECEDENCE", +"CONVERSION_FACTOR" +) + diff --git a/vocabulary_data/dev_hcpcs/manual_table_prepare.sql b/HSPCS/dev_hcpcs/manual_table_prepare.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/manual_table_prepare.sql rename to HSPCS/dev_hcpcs/manual_table_prepare.sql diff --git a/vocabulary_data/dev_hcpcs/mock/00.mock_fast_recreate_schema.sql b/HSPCS/dev_hcpcs/mock/00.mock_fast_recreate_schema.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/00.mock_fast_recreate_schema.sql rename to HSPCS/dev_hcpcs/mock/00.mock_fast_recreate_schema.sql diff --git a/vocabulary_data/dev_hcpcs/mock/01.mock_create_source_tables.sql b/HSPCS/dev_hcpcs/mock/01.mock_create_source_tables.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/01.mock_create_source_tables.sql rename to HSPCS/dev_hcpcs/mock/01.mock_create_source_tables.sql diff --git a/vocabulary_data/dev_hcpcs/mock/02.mock_import.bat b/HSPCS/dev_hcpcs/mock/02.mock_import.bat similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/02.mock_import.bat rename to HSPCS/dev_hcpcs/mock/02.mock_import.bat diff --git a/vocabulary_data/dev_hcpcs/mock/03.mock_load_stage.sql b/HSPCS/dev_hcpcs/mock/03.mock_load_stage.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/03.mock_load_stage.sql rename to HSPCS/dev_hcpcs/mock/03.mock_load_stage.sql diff --git a/vocabulary_data/dev_hcpcs/mock/03.mock_load_stage_part1.sql b/HSPCS/dev_hcpcs/mock/03.mock_load_stage_part1.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/03.mock_load_stage_part1.sql rename to HSPCS/dev_hcpcs/mock/03.mock_load_stage_part1.sql diff --git a/vocabulary_data/dev_hcpcs/mock/03.mock_load_stage_part2.sql b/HSPCS/dev_hcpcs/mock/03.mock_load_stage_part2.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/03.mock_load_stage_part2.sql rename to HSPCS/dev_hcpcs/mock/03.mock_load_stage_part2.sql diff --git a/vocabulary_data/dev_hcpcs/mock/04.mock_generic_update.sql b/HSPCS/dev_hcpcs/mock/04.mock_generic_update.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/04.mock_generic_update.sql rename to HSPCS/dev_hcpcs/mock/04.mock_generic_update.sql diff --git a/vocabulary_data/dev_hcpcs/mock/05.mock_update_results.sql b/HSPCS/dev_hcpcs/mock/05.mock_update_results.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/05.mock_update_results.sql rename to HSPCS/dev_hcpcs/mock/05.mock_update_results.sql diff --git a/vocabulary_data/dev_hcpcs/mock/mock_MapDrugVocabulary.sql b/HSPCS/dev_hcpcs/mock/mock_MapDrugVocabulary.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/mock_MapDrugVocabulary.sql rename to HSPCS/dev_hcpcs/mock/mock_MapDrugVocabulary.sql diff --git a/vocabulary_data/dev_hcpcs/mock/mock_manual_table_apply.sql b/HSPCS/dev_hcpcs/mock/mock_manual_table_apply.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/mock_manual_table_apply.sql rename to HSPCS/dev_hcpcs/mock/mock_manual_table_apply.sql diff --git a/vocabulary_data/dev_hcpcs/mock/mock_manual_table_create.sql b/HSPCS/dev_hcpcs/mock/mock_manual_table_create.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/mock_manual_table_create.sql rename to HSPCS/dev_hcpcs/mock/mock_manual_table_create.sql diff --git a/vocabulary_data/dev_hcpcs/mock/mock_manual_table_extract.sql b/HSPCS/dev_hcpcs/mock/mock_manual_table_extract.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/mock_manual_table_extract.sql rename to HSPCS/dev_hcpcs/mock/mock_manual_table_extract.sql diff --git a/vocabulary_data/dev_hcpcs/mock/mock_manual_table_import.ctl b/HSPCS/dev_hcpcs/mock/mock_manual_table_import.ctl similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/mock_manual_table_import.ctl rename to HSPCS/dev_hcpcs/mock/mock_manual_table_import.ctl diff --git a/vocabulary_data/dev_hcpcs/mock/mock_manual_table_prepare.sql b/HSPCS/dev_hcpcs/mock/mock_manual_table_prepare.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/mock_manual_table_prepare.sql rename to HSPCS/dev_hcpcs/mock/mock_manual_table_prepare.sql diff --git a/vocabulary_data/dev_hcpcs/mock/mock_procedure_drug.sql b/HSPCS/dev_hcpcs/mock/mock_procedure_drug.sql similarity index 100% rename from vocabulary_data/dev_hcpcs/mock/mock_procedure_drug.sql rename to HSPCS/dev_hcpcs/mock/mock_procedure_drug.sql diff --git a/vocabulary_data/dev_hcpcs/procedure_drug.sql b/HSPCS/dev_hcpcs/procedure_drug.sql similarity index 99% rename from vocabulary_data/dev_hcpcs/procedure_drug.sql rename to HSPCS/dev_hcpcs/procedure_drug.sql index 6b7dc8f..32ff094 100644 --- a/vocabulary_data/dev_hcpcs/procedure_drug.sql +++ b/HSPCS/dev_hcpcs/procedure_drug.sql @@ -28,7 +28,6 @@ WHENEVER SQLERROR EXIT SQL.SQLCODE */ SPOOL &1 -ALTER SESSION SET NLS_NUMERIC_CHARACTERS = '.,'; /********************************************* * Script to create input tables according to * * http://www.ohdsi.org/web/wiki/doku.php?id=documentation:international_drugs * @@ -1846,7 +1845,7 @@ commit; -- Write units PROMPT ********************************* PROMPT * 4. Create and link Drug Strength -PROMPT ********************************* +PROMPT *********************************/ PROMPT Write units insert /*+ APPEND */ into drug_concept_stage select distinct @@ -2078,7 +2077,7 @@ delete from ds_stage where drug_concept_code='S5014' and ingredient_concept_code -- create relationship from drug to brand (direct, need to change to stage-type brandsd PROMPT ****************************** PROMPT * 5. Create and link Brand Names * -PROMPT ****************************** +PROMPT ******************************/ PROMPT Create relationship from drug to brand (direct, need to change to stage-type brandsd create table brandname nologging as with bn as ( @@ -2122,7 +2121,7 @@ commit; *****************************/ PROMPT **************************** PROMPT * 6. Clean up -PROMPT ***************************** +PROMPT *****************************/ PROMPT Remove dose forms from concept_stage table alter table drug_concept_stage drop column dose_form; drop table drug_concept_stage_tmp purge; diff --git a/vocabulary_data/dev_hcpcs/readme.md b/HSPCS/dev_hcpcs/readme.md similarity index 100% rename from vocabulary_data/dev_hcpcs/readme.md rename to HSPCS/dev_hcpcs/readme.md diff --git a/Update_ICD10CM.gradle b/ICD10CM/Update_ICD10CM.gradle similarity index 98% rename from Update_ICD10CM.gradle rename to ICD10CM/Update_ICD10CM.gradle index cd19df9..a5b83a1 100644 --- a/Update_ICD10CM.gradle +++ b/ICD10CM/Update_ICD10CM.gradle @@ -5,13 +5,6 @@ ****************************** */ -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 - /*repositories { mavenLocal() mavenCentral() @@ -22,16 +15,7 @@ sourceCompatibility = 1.8 compile 'org.apache.poi:poi-ooxml:3.9' }*/ -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - } -} + /** * Auxiliary classes. TODO: Further should be used java-defined and compiled only diff --git a/Update_ICD10CM.properties b/ICD10CM/Update_ICD10CM.properties similarity index 100% rename from Update_ICD10CM.properties rename to ICD10CM/Update_ICD10CM.properties diff --git a/Update_ICD10CM_DEVV5.gradle b/ICD10CM/Update_ICD10CM_DEVV5.gradle similarity index 97% rename from Update_ICD10CM_DEVV5.gradle rename to ICD10CM/Update_ICD10CM_DEVV5.gradle index 2d18c23..bfdaa60 100644 --- a/Update_ICD10CM_DEVV5.gradle +++ b/ICD10CM/Update_ICD10CM_DEVV5.gradle @@ -5,13 +5,6 @@ ****************************** */ -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 - /*repositories { mavenLocal() mavenCentral() @@ -22,17 +15,6 @@ sourceCompatibility = 1.8 compile 'org.apache.poi:poi-ooxml:3.9' }*/ -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - } -} - /** * Auxiliary classes. TODO: Further should be used java-defined and compiled only */ diff --git a/Update_ICD10CM_DEVV5.properties b/ICD10CM/Update_ICD10CM_DEVV5.properties similarity index 100% rename from Update_ICD10CM_DEVV5.properties rename to ICD10CM/Update_ICD10CM_DEVV5.properties diff --git a/Update_ICD10CM_Part1.gradle b/ICD10CM/Update_ICD10CM_Part1.gradle similarity index 96% rename from Update_ICD10CM_Part1.gradle rename to ICD10CM/Update_ICD10CM_Part1.gradle index d5015ac..cbd6a25 100644 --- a/Update_ICD10CM_Part1.gradle +++ b/ICD10CM/Update_ICD10CM_Part1.gradle @@ -8,13 +8,6 @@ import sun.management.Agent ************************************* */ -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 - /*repositories { mavenLocal() mavenCentral() @@ -25,38 +18,10 @@ sourceCompatibility = 1.8 compile 'org.apache.poi:poi-ooxml:3.9' }*/ -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - classpath 'javax.mail:javax.mail-api:1.5.5' - classpath 'org.apache.pdfbox:pdfbox:2.0.5' - - /*classpath 'javax.mail:mail:1.4.7' - classpath 'org.apache.ant:ant-javamail:1.10.1'*/ - - /*classpath 'ant:ant-javamail:1.6.5' - classpath 'javax.activation:activation:1.1.1' - classpath 'javax.mail:mail:1.4.7'*/ - } -} - -repositories { - mavenLocal() - mavenCentral() -} - configurations { mail } -dependencies { - mail 'org.apache.ant:ant-javamail:1.8.1' -} /* configurations { antMail } diff --git a/Update_ICD10CM_Part1.properties b/ICD10CM/Update_ICD10CM_Part1.properties similarity index 100% rename from Update_ICD10CM_Part1.properties rename to ICD10CM/Update_ICD10CM_Part1.properties diff --git a/Update_ICD10CM_Part2.gradle b/ICD10CM/Update_ICD10CM_Part2.gradle similarity index 98% rename from Update_ICD10CM_Part2.gradle rename to ICD10CM/Update_ICD10CM_Part2.gradle index fa493c5..8fe55dc 100644 --- a/Update_ICD10CM_Part2.gradle +++ b/ICD10CM/Update_ICD10CM_Part2.gradle @@ -5,13 +5,6 @@ ************************************** */ -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 - /*repositories { mavenLocal() mavenCentral() @@ -22,16 +15,6 @@ sourceCompatibility = 1.8 compile 'org.apache.poi:poi-ooxml:3.9' }*/ -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - } -} /** * Auxiliary classes. TODO: Further should be used java-defined and compiled only diff --git a/Update_ICD10CM_Part2.properties b/ICD10CM/Update_ICD10CM_Part2.properties similarity index 100% rename from Update_ICD10CM_Part2.properties rename to ICD10CM/Update_ICD10CM_Part2.properties diff --git a/ICD10CM/build.gradle b/ICD10CM/build.gradle new file mode 100644 index 0000000..a101bd4 --- /dev/null +++ b/ICD10CM/build.gradle @@ -0,0 +1,32 @@ +group 'com.sci.vocabulary' +version '1.0-SNAPSHOT' + +apply plugin: 'groovy' +apply plugin: 'java' + +sourceCompatibility = 1.8 + +repositories { + mavenLocal() + mavenCentral() +} + +dependencies { + compile 'org.codehaus.groovy:groovy-all:2.3.11' + testCompile group: 'junit', name: 'junit', version: '4.11' + testCompile group: 'junit', name: 'junit', version: '4.12' + compile 'org.apache.ant:ant-javamail:1.8.1' +} + +buildscript { + repositories { + mavenLocal() + mavenCentral() + } + dependencies { + classpath 'org.apache.poi:poi:3.9' + classpath 'org.apache.poi:poi-ooxml:3.9' + classpath 'javax.mail:javax.mail-api:1.5.5' + classpath 'org.apache.pdfbox:pdfbox:2.0.5' + } +} diff --git a/vocabulary_data/dev_icd10cm/00.fast_recreate_schema.sql b/ICD10CM/dev_icd10cm/00.fast_recreate_schema.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/00.fast_recreate_schema.sql rename to ICD10CM/dev_icd10cm/00.fast_recreate_schema.sql diff --git a/vocabulary_data/dev_icd10cm/01.create_source_tables.sql b/ICD10CM/dev_icd10cm/01.create_source_tables.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/01.create_source_tables.sql rename to ICD10CM/dev_icd10cm/01.create_source_tables.sql diff --git a/vocabulary_data/dev_icd10cm/02.import.bat b/ICD10CM/dev_icd10cm/02.import.bat similarity index 100% rename from vocabulary_data/dev_icd10cm/02.import.bat rename to ICD10CM/dev_icd10cm/02.import.bat diff --git a/vocabulary_data/dev_icd10cm/03.load_stage.sql b/ICD10CM/dev_icd10cm/03.load_stage.sql similarity index 99% rename from vocabulary_data/dev_icd10cm/03.load_stage.sql rename to ICD10CM/dev_icd10cm/03.load_stage.sql index cbcd66d..374bb48 100644 --- a/vocabulary_data/dev_icd10cm/03.load_stage.sql +++ b/ICD10CM/dev_icd10cm/03.load_stage.sql @@ -57,8 +57,8 @@ END; / COMMIT; --- Create synonym for source table from DEV_ICD10CM schema -PROMPT Create synonym for source table from DEV_ICD10CM schema +-- Create sysnonym for source table from DEV_ICD10CM schema +PROMPT Create sysnonym for source table from DEV_ICD10CM schema CREATE SYNONYM ICD10CM_TABLE FOR DEV_ICD10CM.ICD10CM_TABLE; -- 1. Update latest_update field to new date diff --git a/vocabulary_data/dev_icd10cm/03.load_stage_part1.sql b/ICD10CM/dev_icd10cm/03.load_stage_part1.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/03.load_stage_part1.sql rename to ICD10CM/dev_icd10cm/03.load_stage_part1.sql diff --git a/vocabulary_data/dev_icd10cm/03.load_stage_part2.sql b/ICD10CM/dev_icd10cm/03.load_stage_part2.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/03.load_stage_part2.sql rename to ICD10CM/dev_icd10cm/03.load_stage_part2.sql diff --git a/vocabulary_data/dev_icd10cm/04.generic_update.sql b/ICD10CM/dev_icd10cm/04.generic_update.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/04.generic_update.sql rename to ICD10CM/dev_icd10cm/04.generic_update.sql diff --git a/vocabulary_data/dev_icd10cm/05.update_results.sql b/ICD10CM/dev_icd10cm/05.update_results.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/05.update_results.sql rename to ICD10CM/dev_icd10cm/05.update_results.sql diff --git a/vocabulary_data/dev_icd10cm/_backup/00.fast_recreate_schema_prodv5.sql b/ICD10CM/dev_icd10cm/_backup/00.fast_recreate_schema_prodv5.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/_backup/00.fast_recreate_schema_prodv5.sql rename to ICD10CM/dev_icd10cm/_backup/00.fast_recreate_schema_prodv5.sql diff --git a/vocabulary_data/dev_icd10cm/_backup/03.load_stage.sql b/ICD10CM/dev_icd10cm/_backup/03.load_stage.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/_backup/03.load_stage.sql rename to ICD10CM/dev_icd10cm/_backup/03.load_stage.sql diff --git a/vocabulary_data/dev_icd10cm/_backup/load_stage_icd10cm.sql b/ICD10CM/dev_icd10cm/_backup/load_stage_icd10cm.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/_backup/load_stage_icd10cm.sql rename to ICD10CM/dev_icd10cm/_backup/load_stage_icd10cm.sql diff --git a/vocabulary_data/dev_icd10cm/_backup/manual_table_import.ctl b/ICD10CM/dev_icd10cm/_backup/manual_table_import.ctl similarity index 100% rename from vocabulary_data/dev_icd10cm/_backup/manual_table_import.ctl rename to ICD10CM/dev_icd10cm/_backup/manual_table_import.ctl diff --git a/vocabulary_data/dev_icd10cm/_backup/mock_manual_table_import.ctl b/ICD10CM/dev_icd10cm/_backup/mock_manual_table_import.ctl similarity index 100% rename from vocabulary_data/dev_icd10cm/_backup/mock_manual_table_import.ctl rename to ICD10CM/dev_icd10cm/_backup/mock_manual_table_import.ctl diff --git a/vocabulary_data/dev_icd10cm/icd10cm.ctl b/ICD10CM/dev_icd10cm/icd10cm.ctl similarity index 100% rename from vocabulary_data/dev_icd10cm/icd10cm.ctl rename to ICD10CM/dev_icd10cm/icd10cm.ctl diff --git a/vocabulary_data/dev_icd10cm/icd10cm.txt b/ICD10CM/dev_icd10cm/icd10cm.txt similarity index 100% rename from vocabulary_data/dev_icd10cm/icd10cm.txt rename to ICD10CM/dev_icd10cm/icd10cm.txt diff --git a/vocabulary_data/dev_icd10cm/manual_table_apply.sql b/ICD10CM/dev_icd10cm/manual_table_apply.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/manual_table_apply.sql rename to ICD10CM/dev_icd10cm/manual_table_apply.sql diff --git a/vocabulary_data/dev_icd10cm/manual_table_create.sql b/ICD10CM/dev_icd10cm/manual_table_create.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/manual_table_create.sql rename to ICD10CM/dev_icd10cm/manual_table_create.sql diff --git a/ICD10CM/dev_icd10cm/manual_table_extract.sql b/ICD10CM/dev_icd10cm/manual_table_extract.sql new file mode 100644 index 0000000..7a8ac5e --- /dev/null +++ b/ICD10CM/dev_icd10cm/manual_table_extract.sql @@ -0,0 +1,45 @@ +SET LINESIZE 1024 +SET ECHO OFF +SET HEADING OFF +SET FEEDBACK OFF +SET VERIFY OFF +SET NEWPAGE NONE +-- SET COLSEP ';' + +COLUMN exp_file_name new_val exp_file_name +SELECT '&1'|| '/' || '&2' AS exp_file_name FROM dual; +SPOOL &&exp_file_name + +SELECT 'CONCEPT_CODE_1' || ',' + || 'CONCEPT_NAME_1' || ',' + || 'VOCABULARY_ID_1' || ',' + || 'INVALID_REASON_1' || ',' + || 'CONCEPT_CODE_2' || ',' + || 'CONCEPT_NAME_2' || ',' + || 'CONCEPT_CLASS_ID_2' || ',' + || 'VOCABULARY_ID_2' || ',' + || 'INVALID_REASON_2' || ',' + || 'RELATIONSHIP_ID' || ',' + || 'VALID_START_DATE' || ',' + || 'VALID_END_DATE' || ',' + || 'INVALID_REASON' +FROM DUAL +UNION ALL +SELECT '"' || CONCEPT_CODE_1 || '",' + || '"' || CONCEPT_NAME_1 || '",' + || '"' || VOCABULARY_ID_1 || '",' + || '"' || INVALID_REASON_1 || '",' + || '"' || CONCEPT_CODE_2 || '",' + || '"' || CONCEPT_NAME_2 || '",' + || '"' || CONCEPT_CLASS_ID_2 || '",' + || '"' || VOCABULARY_ID_2 || '",' + || '"' || INVALID_REASON_2 || '",' + || '"' || RELATIONSHIP_ID || '",' + || '"' || TO_CHAR(VALID_START_DATE, 'YYYY-MM-DD HH24:MI:SS') || '",' + || '"' || TO_CHAR(VALID_END_DATE, 'YYYY-MM-DD HH24:MI:SS') || '",' + || '"' || INVALID_REASON || '"' +FROM &3 +; + +SPOOL OFF +EXIT \ No newline at end of file diff --git a/vocabulary_data/dev_icd10cm/manual_table_import.ctl b/ICD10CM/dev_icd10cm/manual_table_import.ctl similarity index 100% rename from vocabulary_data/dev_icd10cm/manual_table_import.ctl rename to ICD10CM/dev_icd10cm/manual_table_import.ctl diff --git a/vocabulary_data/dev_icd10cm/manual_table_prepare.sql b/ICD10CM/dev_icd10cm/manual_table_prepare.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/manual_table_prepare.sql rename to ICD10CM/dev_icd10cm/manual_table_prepare.sql diff --git a/vocabulary_data/dev_icd10cm/manual_work_result/import_manual_table.bat b/ICD10CM/dev_icd10cm/manual_work_result/import_manual_table.bat similarity index 100% rename from vocabulary_data/dev_icd10cm/manual_work_result/import_manual_table.bat rename to ICD10CM/dev_icd10cm/manual_work_result/import_manual_table.bat diff --git a/vocabulary_data/dev_icd10cm/manual_work_result/manual_table_data.csv b/ICD10CM/dev_icd10cm/manual_work_result/manual_table_data.csv similarity index 100% rename from vocabulary_data/dev_icd10cm/manual_work_result/manual_table_data.csv rename to ICD10CM/dev_icd10cm/manual_work_result/manual_table_data.csv diff --git a/vocabulary_data/dev_hcpcs/manual_work_result/mock_manual_table_data.csv b/ICD10CM/dev_icd10cm/manual_work_result/mock_manual_table_data.csv similarity index 100% rename from vocabulary_data/dev_hcpcs/manual_work_result/mock_manual_table_data.csv rename to ICD10CM/dev_icd10cm/manual_work_result/mock_manual_table_data.csv diff --git a/vocabulary_data/dev_icd10cm/manual_work_result/prepare_manual_table.sql b/ICD10CM/dev_icd10cm/manual_work_result/prepare_manual_table.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/manual_work_result/prepare_manual_table.sql rename to ICD10CM/dev_icd10cm/manual_work_result/prepare_manual_table.sql diff --git a/vocabulary_data/dev_icd10cm/mock/00.mock_fast_recreate_schema.sql b/ICD10CM/dev_icd10cm/mock/00.mock_fast_recreate_schema.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/00.mock_fast_recreate_schema.sql rename to ICD10CM/dev_icd10cm/mock/00.mock_fast_recreate_schema.sql diff --git a/vocabulary_data/dev_icd10cm/mock/01.mock_create_source_tables.sql b/ICD10CM/dev_icd10cm/mock/01.mock_create_source_tables.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/01.mock_create_source_tables.sql rename to ICD10CM/dev_icd10cm/mock/01.mock_create_source_tables.sql diff --git a/vocabulary_data/dev_icd10cm/mock/02.mock_import.bat b/ICD10CM/dev_icd10cm/mock/02.mock_import.bat similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/02.mock_import.bat rename to ICD10CM/dev_icd10cm/mock/02.mock_import.bat diff --git a/vocabulary_data/dev_icd10cm/mock/03.mock_load_stage.sql b/ICD10CM/dev_icd10cm/mock/03.mock_load_stage.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/03.mock_load_stage.sql rename to ICD10CM/dev_icd10cm/mock/03.mock_load_stage.sql diff --git a/vocabulary_data/dev_icd10cm/mock/03.mock_load_stage_part1.sql b/ICD10CM/dev_icd10cm/mock/03.mock_load_stage_part1.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/03.mock_load_stage_part1.sql rename to ICD10CM/dev_icd10cm/mock/03.mock_load_stage_part1.sql diff --git a/vocabulary_data/dev_icd10cm/mock/03.mock_load_stage_part2.sql b/ICD10CM/dev_icd10cm/mock/03.mock_load_stage_part2.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/03.mock_load_stage_part2.sql rename to ICD10CM/dev_icd10cm/mock/03.mock_load_stage_part2.sql diff --git a/vocabulary_data/dev_icd10cm/mock/04.mock_generic_update.sql b/ICD10CM/dev_icd10cm/mock/04.mock_generic_update.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/04.mock_generic_update.sql rename to ICD10CM/dev_icd10cm/mock/04.mock_generic_update.sql diff --git a/vocabulary_data/dev_icd10cm/mock/05.mock_update_results.sql b/ICD10CM/dev_icd10cm/mock/05.mock_update_results.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/05.mock_update_results.sql rename to ICD10CM/dev_icd10cm/mock/05.mock_update_results.sql diff --git a/vocabulary_data/dev_icd10cm/mock/mock_manual_table_apply.sql b/ICD10CM/dev_icd10cm/mock/mock_manual_table_apply.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/mock_manual_table_apply.sql rename to ICD10CM/dev_icd10cm/mock/mock_manual_table_apply.sql diff --git a/vocabulary_data/dev_icd10cm/mock/mock_manual_table_create.sql b/ICD10CM/dev_icd10cm/mock/mock_manual_table_create.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/mock_manual_table_create.sql rename to ICD10CM/dev_icd10cm/mock/mock_manual_table_create.sql diff --git a/vocabulary_data/dev_icd10cm/mock/mock_manual_table_extract.sql b/ICD10CM/dev_icd10cm/mock/mock_manual_table_extract.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/mock_manual_table_extract.sql rename to ICD10CM/dev_icd10cm/mock/mock_manual_table_extract.sql diff --git a/vocabulary_data/dev_icd10cm/mock/mock_manual_table_import.ctl b/ICD10CM/dev_icd10cm/mock/mock_manual_table_import.ctl similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/mock_manual_table_import.ctl rename to ICD10CM/dev_icd10cm/mock/mock_manual_table_import.ctl diff --git a/vocabulary_data/dev_icd10cm/mock/mock_manual_table_prepare.sql b/ICD10CM/dev_icd10cm/mock/mock_manual_table_prepare.sql similarity index 100% rename from vocabulary_data/dev_icd10cm/mock/mock_manual_table_prepare.sql rename to ICD10CM/dev_icd10cm/mock/mock_manual_table_prepare.sql diff --git a/vocabulary_data/dev_icd10cm/readme.md b/ICD10CM/dev_icd10cm/readme.md similarity index 100% rename from vocabulary_data/dev_icd10cm/readme.md rename to ICD10CM/dev_icd10cm/readme.md diff --git a/Update_LOINC.gradle b/LOINC/Update_LOINC.gradle similarity index 98% rename from Update_LOINC.gradle rename to LOINC/Update_LOINC.gradle index 390df28..601ec35 100644 --- a/Update_LOINC.gradle +++ b/LOINC/Update_LOINC.gradle @@ -5,33 +5,6 @@ **************************** */ -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -apply plugin: 'groovy' - -sourceCompatibility = 1.8 - -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - classpath 'net.bican:jwordpress:0.6.5' - // classpath 'org.apache.httpcomponents:httpclient:4.5.3' - classpath 'org.codehaus.groovy.modules.http-builder:http-builder:0.5.2' - classpath 'com.squareup.okhttp3:okhttp:3.5.0' - - classpath 'commons-io:commons-io:2.5' - classpath 'org.apache.httpcomponents:httpclient:4.5.3' - classpath 'org.apache.httpcomponents:httpcore:4.4.6' - } -} /* repositories { mavenLocal() @@ -53,6 +26,7 @@ import org.apache.poi.ss.usermodel.WorkbookFactory import org.apache.poi.ss.usermodel.Sheet import net.bican.wordpress.* + /* task compileOne(type: JavaCompile) { source = sourceSets.main.java.srcDir diff --git a/Update_LOINC.properties b/LOINC/Update_LOINC.properties similarity index 100% rename from Update_LOINC.properties rename to LOINC/Update_LOINC.properties diff --git a/Update_LOINC_Part1.gradle b/LOINC/Update_LOINC_Part1.gradle similarity index 96% rename from Update_LOINC_Part1.gradle rename to LOINC/Update_LOINC_Part1.gradle index ad1d561..dbc8278 100644 --- a/Update_LOINC_Part1.gradle +++ b/LOINC/Update_LOINC_Part1.gradle @@ -5,12 +5,6 @@ ************************************* */ -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 /*repositories { mavenLocal() @@ -22,38 +16,8 @@ sourceCompatibility = 1.8 compile 'org.apache.poi:poi-ooxml:3.9' }*/ -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - classpath 'javax.mail:javax.mail-api:1.5.5' - classpath 'org.apache.pdfbox:pdfbox:2.0.5' - - /*classpath 'javax.mail:mail:1.4.7' - classpath 'org.apache.ant:ant-javamail:1.10.1'*/ - - /*classpath 'ant:ant-javamail:1.6.5' - classpath 'javax.activation:activation:1.1.1' - classpath 'javax.mail:mail:1.4.7'*/ - } -} - -repositories { - mavenLocal() - mavenCentral() -} -configurations { - mail -} -dependencies { - mail 'org.apache.ant:ant-javamail:1.8.1' -} /* diff --git a/Update_LOINC_Part1.properties b/LOINC/Update_LOINC_Part1.properties similarity index 100% rename from Update_LOINC_Part1.properties rename to LOINC/Update_LOINC_Part1.properties diff --git a/Update_LOINC_Part2.gradle b/LOINC/Update_LOINC_Part2.gradle similarity index 98% rename from Update_LOINC_Part2.gradle rename to LOINC/Update_LOINC_Part2.gradle index 496024f..671c59d 100644 --- a/Update_LOINC_Part2.gradle +++ b/LOINC/Update_LOINC_Part2.gradle @@ -5,12 +5,6 @@ ************************************** */ -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 /*repositories { mavenLocal() @@ -22,16 +16,7 @@ sourceCompatibility = 1.8 compile 'org.apache.poi:poi-ooxml:3.9' }*/ -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - } -} + /** * Auxiliary classes. TODO: Further should be used java-defined and compiled only diff --git a/Update_LOINC_Part2.properties b/LOINC/Update_LOINC_Part2.properties similarity index 100% rename from Update_LOINC_Part2.properties rename to LOINC/Update_LOINC_Part2.properties diff --git a/LOINC/build.gradle b/LOINC/build.gradle new file mode 100644 index 0000000..587f845 --- /dev/null +++ b/LOINC/build.gradle @@ -0,0 +1,47 @@ +group 'com.sci.vocabulary' +version '1.0-SNAPSHOT' + +apply plugin: 'groovy' +apply plugin: 'java' + +sourceCompatibility = 1.8 + +repositories { + mavenLocal() + mavenCentral() +} + + +buildscript { + repositories { + mavenLocal() + mavenCentral() + } + + dependencies { + classpath group: 'redstone.xmlrpc', name: 'xmlrpc', version: '1.1.1' +// compile group: 'redstone.xmlrpc', name: 'xmlrpc', version: '1.1.1' + classpath 'org.apache.poi:poi:3.9' + classpath 'org.apache.poi:poi-ooxml:3.9' + classpath 'net.bican:jwordpress:0.6.5' + classpath 'org.apache.httpcomponents:httpclient:4.5.3' + classpath 'org.codehaus.groovy.modules.http-builder:http-builder:0.5.2' + classpath 'com.squareup.okhttp3:okhttp:3.5.0' + + classpath 'commons-io:commons-io:2.5' + classpath 'org.apache.httpcomponents:httpclient:4.5.3' + classpath 'org.apache.httpcomponents:httpcore:4.4.6' + + classpath 'javax.mail:javax.mail-api:1.5.5' + classpath 'org.apache.pdfbox:pdfbox:2.0.5' + } +} + +dependencies { + compile 'org.codehaus.groovy:groovy-all:2.3.11' + testCompile group: 'junit', name: 'junit', version: '4.11' + testCompile group: 'junit', name: 'junit', version: '4.12' + compile 'org.apache.ant:ant-javamail:1.8.1' +} + + diff --git a/vocabulary_data/dev_loinc/00.fast_recreate_schema.sql b/LOINC/dev_loinc/00.fast_recreate_schema.sql similarity index 100% rename from vocabulary_data/dev_loinc/00.fast_recreate_schema.sql rename to LOINC/dev_loinc/00.fast_recreate_schema.sql diff --git a/vocabulary_data/dev_loinc/01.create_source_tables.sql b/LOINC/dev_loinc/01.create_source_tables.sql similarity index 100% rename from vocabulary_data/dev_loinc/01.create_source_tables.sql rename to LOINC/dev_loinc/01.create_source_tables.sql diff --git a/vocabulary_data/dev_loinc/02.import.bat b/LOINC/dev_loinc/02.import.bat similarity index 100% rename from vocabulary_data/dev_loinc/02.import.bat rename to LOINC/dev_loinc/02.import.bat diff --git a/vocabulary_data/dev_loinc/03.load_stage_part1.sql b/LOINC/dev_loinc/03.load_stage_part1.sql similarity index 100% rename from vocabulary_data/dev_loinc/03.load_stage_part1.sql rename to LOINC/dev_loinc/03.load_stage_part1.sql diff --git a/vocabulary_data/dev_loinc/03.load_stage_part2.sql b/LOINC/dev_loinc/03.load_stage_part2.sql similarity index 100% rename from vocabulary_data/dev_loinc/03.load_stage_part2.sql rename to LOINC/dev_loinc/03.load_stage_part2.sql diff --git a/vocabulary_data/dev_loinc/04.generic_update.sql b/LOINC/dev_loinc/04.generic_update.sql similarity index 100% rename from vocabulary_data/dev_loinc/04.generic_update.sql rename to LOINC/dev_loinc/04.generic_update.sql diff --git a/vocabulary_data/dev_loinc/05.update_results.sql b/LOINC/dev_loinc/05.update_results.sql similarity index 100% rename from vocabulary_data/dev_loinc/05.update_results.sql rename to LOINC/dev_loinc/05.update_results.sql diff --git a/vocabulary_data/dev_loinc/CPT_MRSMAP.ctl b/LOINC/dev_loinc/CPT_MRSMAP.ctl similarity index 100% rename from vocabulary_data/dev_loinc/CPT_MRSMAP.ctl rename to LOINC/dev_loinc/CPT_MRSMAP.ctl diff --git a/vocabulary_data/dev_loinc/LOINC.CTL b/LOINC/dev_loinc/LOINC.CTL similarity index 100% rename from vocabulary_data/dev_loinc/LOINC.CTL rename to LOINC/dev_loinc/LOINC.CTL diff --git a/vocabulary_data/dev_loinc/LOINC_ANSWERS.CTL b/LOINC/dev_loinc/LOINC_ANSWERS.CTL similarity index 100% rename from vocabulary_data/dev_loinc/LOINC_ANSWERS.CTL rename to LOINC/dev_loinc/LOINC_ANSWERS.CTL diff --git a/vocabulary_data/dev_loinc/MAP_TO.CTL b/LOINC/dev_loinc/MAP_TO.CTL similarity index 100% rename from vocabulary_data/dev_loinc/MAP_TO.CTL rename to LOINC/dev_loinc/MAP_TO.CTL diff --git a/vocabulary_data/dev_loinc/SOURCE_ORGANIZATION.CTL b/LOINC/dev_loinc/SOURCE_ORGANIZATION.CTL similarity index 100% rename from vocabulary_data/dev_loinc/SOURCE_ORGANIZATION.CTL rename to LOINC/dev_loinc/SOURCE_ORGANIZATION.CTL diff --git a/vocabulary_data/dev_loinc/loinc_class.ctl b/LOINC/dev_loinc/loinc_class.ctl similarity index 100% rename from vocabulary_data/dev_loinc/loinc_class.ctl rename to LOINC/dev_loinc/loinc_class.ctl diff --git a/vocabulary_data/dev_loinc/loinc_forms.ctl b/LOINC/dev_loinc/loinc_forms.ctl similarity index 100% rename from vocabulary_data/dev_loinc/loinc_forms.ctl rename to LOINC/dev_loinc/loinc_forms.ctl diff --git a/vocabulary_data/dev_loinc/loinc_hierarchy.ctl b/LOINC/dev_loinc/loinc_hierarchy.ctl similarity index 100% rename from vocabulary_data/dev_loinc/loinc_hierarchy.ctl rename to LOINC/dev_loinc/loinc_hierarchy.ctl diff --git a/vocabulary_data/dev_loinc/mock/00.mock_fast_recreate_schema.sql b/LOINC/dev_loinc/mock/00.mock_fast_recreate_schema.sql similarity index 100% rename from vocabulary_data/dev_loinc/mock/00.mock_fast_recreate_schema.sql rename to LOINC/dev_loinc/mock/00.mock_fast_recreate_schema.sql diff --git a/vocabulary_data/dev_loinc/mock/01.mock_create_source_tables.sql b/LOINC/dev_loinc/mock/01.mock_create_source_tables.sql similarity index 100% rename from vocabulary_data/dev_loinc/mock/01.mock_create_source_tables.sql rename to LOINC/dev_loinc/mock/01.mock_create_source_tables.sql diff --git a/vocabulary_data/dev_loinc/mock/02.mock_import.bat b/LOINC/dev_loinc/mock/02.mock_import.bat similarity index 100% rename from vocabulary_data/dev_loinc/mock/02.mock_import.bat rename to LOINC/dev_loinc/mock/02.mock_import.bat diff --git a/vocabulary_data/dev_loinc/mock/03.mock_load_stage.sql b/LOINC/dev_loinc/mock/03.mock_load_stage.sql similarity index 100% rename from vocabulary_data/dev_loinc/mock/03.mock_load_stage.sql rename to LOINC/dev_loinc/mock/03.mock_load_stage.sql diff --git a/vocabulary_data/dev_loinc/mock/03.mock_load_stage_part1.sql b/LOINC/dev_loinc/mock/03.mock_load_stage_part1.sql similarity index 100% rename from vocabulary_data/dev_loinc/mock/03.mock_load_stage_part1.sql rename to LOINC/dev_loinc/mock/03.mock_load_stage_part1.sql diff --git a/vocabulary_data/dev_loinc/mock/03.mock_load_stage_part2.sql b/LOINC/dev_loinc/mock/03.mock_load_stage_part2.sql similarity index 100% rename from vocabulary_data/dev_loinc/mock/03.mock_load_stage_part2.sql rename to LOINC/dev_loinc/mock/03.mock_load_stage_part2.sql diff --git a/vocabulary_data/dev_loinc/mock/04.mock_generic_update.sql b/LOINC/dev_loinc/mock/04.mock_generic_update.sql similarity index 100% rename from vocabulary_data/dev_loinc/mock/04.mock_generic_update.sql rename to LOINC/dev_loinc/mock/04.mock_generic_update.sql diff --git a/vocabulary_data/dev_loinc/mock/05.mock_update_results.sql b/LOINC/dev_loinc/mock/05.mock_update_results.sql similarity index 100% rename from vocabulary_data/dev_loinc/mock/05.mock_update_results.sql rename to LOINC/dev_loinc/mock/05.mock_update_results.sql diff --git a/vocabulary_data/dev_loinc/readme.md b/LOINC/dev_loinc/readme.md similarity index 100% rename from vocabulary_data/dev_loinc/readme.md rename to LOINC/dev_loinc/readme.md diff --git a/vocabulary_data/dev_loinc/xder2_sscccRefset_LOINCExpressionAssociationFull_INT.ctl b/LOINC/dev_loinc/xder2_sscccRefset_LOINCExpressionAssociationFull_INT.ctl similarity index 100% rename from vocabulary_data/dev_loinc/xder2_sscccRefset_LOINCExpressionAssociationFull_INT.ctl rename to LOINC/dev_loinc/xder2_sscccRefset_LOINCExpressionAssociationFull_INT.ctl diff --git a/README.md b/README.md new file mode 100644 index 0000000..71c8401 --- /dev/null +++ b/README.md @@ -0,0 +1,2 @@ +# VocabularyUpdate +This is OMOP Vocabulary update automation tool, writted on Gradle build environment. diff --git a/backup/.gradle/3.2.1/taskArtifacts/fileHashes.bin b/backup/.gradle/3.2.1/taskArtifacts/fileHashes.bin deleted file mode 100644 index 0d2ef31..0000000 Binary files a/backup/.gradle/3.2.1/taskArtifacts/fileHashes.bin and /dev/null differ diff --git a/backup/.gradle/3.2.1/taskArtifacts/fileSnapshots.bin b/backup/.gradle/3.2.1/taskArtifacts/fileSnapshots.bin deleted file mode 100644 index 0bc640f..0000000 Binary files a/backup/.gradle/3.2.1/taskArtifacts/fileSnapshots.bin and /dev/null differ diff --git a/backup/.gradle/3.2.1/taskArtifacts/taskArtifacts.bin b/backup/.gradle/3.2.1/taskArtifacts/taskArtifacts.bin deleted file mode 100644 index b073102..0000000 Binary files a/backup/.gradle/3.2.1/taskArtifacts/taskArtifacts.bin and /dev/null differ diff --git a/backup/build.gradle_old1 b/backup/build.gradle_old1 deleted file mode 100644 index 426cc1e..0000000 --- a/backup/build.gradle_old1 +++ /dev/null @@ -1,275 +0,0 @@ -group 'com.sci.vocabulary' -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 - -/*repositories { - mavenLocal() - mavenCentral() -}*/ - -/*dependencies { - compile 'org.apache.poi:poi:3.9' - compile 'org.apache.poi:poi-ooxml:3.9' -}*/ - -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - } -} - -import groovy.io.FileType -import org.apache.poi.ss.usermodel.Cell -import org.apache.poi.ss.usermodel.Row -import org.apache.poi.ss.usermodel.Workbook -import org.apache.poi.ss.usermodel.WorkbookFactory -import org.apache.poi.ss.usermodel.Sheet - -/*** - * Vocabulary update - * Version 0.0.2 - */ - -def fileUrl = 'https://www.cms.gov/Medicare/Coding/HCPCSReleaseCodeSets/Downloads/2017-Alpha-Numeric-HCPCS-File.zip' -def tempDir = File.createTempDir() -def inputFile = tempDir.getPath() + "\\" + "HCPC17_CONTR_ANWEB.xlsx" -def outputFile = tempDir.getPath() + "\\" + "ANWEB_V2.csv" - -task downloadUpdatePack() << { - println '*** Download action ***' - println "4) !!!!!!!!!!!!!" + Thread.currentThread().getId() - - /* Downloading file */ - def timeStart = System.currentTimeMillis() - println '\tDownloading file' - println '\t\tStored to: ' + tempDir.getPath() - ant.get(src: fileUrl, dest: tempDir, verbose: true) - println '\tDownload completed...' - - def timeFinish = System.currentTimeMillis() - def timeElapsed = timeFinish - timeStart - println '\tTime elapsed: ' + timeElapsed / 1000 + ' in seconds.' -} - -task extractFiles() << { - println '*** Extract action ***' - println "3) !!!!!!!!!!!!!" + Thread.currentThread().getId() - - /* Extracting file */ - def fileList = [] - def dir = tempDir - dir.eachFile(FileType.FILES) { file -> - fileList << file - if (file.getPath().endsWith('zip')) { - ant.unzip(src: file.getPath(), dest: tempDir, overwrite: false) - println('\t\tunzipped...') - } - } -} - -task xls2Csv << { - println '*** Convert action ***' - - println "1) !!!!!!!!!!!!!" + Thread.currentThread().getId() - // For storing data into CSV files - StringBuffer data = new StringBuffer(); - try { - FileOutputStream fos = new FileOutputStream(outputFile); - - // Get the workbook object for XLS file - Workbook workbook = WorkbookFactory.create(new FileInputStream(inputFile)); - // Get first sheet from the workbook - Sheet sheet = workbook.getSheetAt(0); -// Cell cell; -// Row row; - - for (int i = 0; i < sheet.getLastRowNum(); i++){ - Row row = sheet.getRow(i); - - if (row!= null){ - for (int j = 0; j < row.getLastCellNum(); j++){ - Cell cell = row.getCell(j); - if (cell == null){ - data.append(";"); - } else { - cell.setCellType(Cell.CELL_TYPE_STRING) - data.append("\"" + cell. toString().trim().replaceAll("\"", "'") + "\"" + ";"); -// switch (cell.getCellType()) { -// case Cell.CELL_TYPE_BOOLEAN: -// data.append("\"" + cell.getBooleanCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_NUMERIC: -// data.append("\"" + cell.cgetNumericCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_STRING: -//// if (!cell.getStringCellValue().contains("\"")){ -// println cell.toString() -// data.append("\"" + cell.getStringCellValue().trim().replaceAll("\"", "'") + "\"" + ";"); -//// } else { -//// data.append(";"); -//// } -// break; -// -// case Cell.CELL_TYPE_BLANK: -// data.append("" + ";"); -// break; -// -// default: -// data.append(cell + ";"); -// } - - - - } - } - data.append('\n'); - } else { - - } - } - - // Iterate through each rows from first sheet -// Iterator rowIterator = sheet.iterator(); -// while (rowIterator.hasNext()) { -// row = rowIterator.next(); -// // For each row, iterate through each columns -// Iterator cellIterator = row.cellIterator(); -// while (cellIterator.hasNext()) { -// cell = cellIterator.next(); -// -// switch (cell.getCellType()) { -// case Cell.CELL_TYPE_BOOLEAN: -// data.append("\"" + cell.getBooleanCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_NUMERIC: -// data.append("\"" + cell.getNumericCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_STRING: -// data.append("\"" + cell.getStringCellValue().trim() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_BLANK: -// data.append("" + ";"); -// break; -// -// default: -// data.append(cell + ";"); -// } -// -// } -// -// } - - fos.write(data.toString().getBytes()); - fos.close(); - } - catch (FileNotFoundException e) { - e.printStackTrace(); - } - catch (IOException e) { - e.printStackTrace(); - } -} - -task task1(type:Exec) { - commandLine 'sqlldr.exe' -} - -task importData << { - println '*** Import action ***' - - def path = tempDir.getPath() - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def controlFile = 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\2016-Alpha-Numeric-HCPCS-File\\ANWEB_V2.ctl' - def dataFile = path + "\\" + "ANWEB_V2.csv" - println '!!!!' + dataFile - println '!!!!' + new File(dataFile).exists() - def logFile = path + "\\" + "ANWEB_V2.log" - def discardFile = path + "\\" + "ANWEB_V2.dsc" - - exec { - println "2) !!!!!!!!!!!!!" + Thread.currentThread().getId() - executable "sqlldr.exe" - args "USERID=$userName/$password CONTROL=$controlFile DATA=$dataFile LOG=$logFile DISCARD=$discardFile" - } - - - //commandLine "sqlldr.exe" - -// args "USERID=$userName/$password CONTROL=$controlFile DATA=$dataFile LOG=$logFile DISCARD=$discardFile" - -/* standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -*/ -} - -/*task runLoadStageScript(type: Exec) { - def path = tempDir.getPath() - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def loadStageFile = 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\02.load_stage.sql' - def logFile = path + "load_stage.log" - - workDir = tempDir - - commandLine = "sqlplus /nolog $userName/$password @$loadStageFile > $logFile" - - standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -} - -task runGenericUpdate(type: Exec) { - def path = tempDir.getPath() - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def genericUpdateFile = 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\02.load_stage.sql' - def logFile = path + "generic_update.log" - - workDir = tempDir - - commandLine = "sqlplus /nolog $userName/$password @$genericUpdateFile > $logFile" - - standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -}*/ - - - - -extractFiles.dependsOn(downloadUpdatePack) -xls2Csv.dependsOn(extractFiles) -importData.dependsOn(xls2Csv) -/* - FileInputStream fis = new FileInputStream(filename); - Workbook wb = new XSSFWorkbook(fis); - Sheet sheet = wb.getSheetAt(0); - for (Row row : sheet) { - for (Cell cell : row) { - doSomething(cell.toString()) - } - - } -*/ \ No newline at end of file diff --git a/backup/build.gradle_old2 b/backup/build.gradle_old2 deleted file mode 100644 index 583a900..0000000 --- a/backup/build.gradle_old2 +++ /dev/null @@ -1,470 +0,0 @@ -group 'com.sci.vocabulary' -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 - -/*repositories { - mavenLocal() - mavenCentral() -}*/ - -/*dependencies { - compile 'org.apache.poi:poi:3.9' - compile 'org.apache.poi:poi-ooxml:3.9' - - compile fileTree(dir: 'libs', include: ['*.jar']) - compile project(':material-intro') // add this line to compile some project (for multi-project config) -}*/ - -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - } -} - -import groovy.io.FileType -import org.apache.poi.ss.usermodel.Cell -import org.apache.poi.ss.usermodel.Row -import org.apache.poi.ss.usermodel.Workbook -import org.apache.poi.ss.usermodel.WorkbookFactory -import org.apache.poi.ss.usermodel.Sheet - - -/*** - * HCPCS vocabulary update - * Version 0.0.3 - */ -def tempDir = File.createTempDir() -tempDir.deleteOnExit() - -/** - * It just renew user schema and prepare it for further vocabulary update - */ -task fastRecreate << { - println '/** ' - println '* "Fast Recreate" Action ' - println '**/ ' - - def log_file = "$tempDir.path\\${project.properties['hcpcs.fastRecreate.logFileName']}" - def error_file = "$tempDir.path\\${project.properties['hcpcs.fastRecreate.errFileName']}" - - def db = [un: project.properties['hcpcs.db.userName'], pw: project.properties['hcpcs.db.password'], tns: project.properties['hcpcs.db.tnsName'], - sqlfile: project.properties['hcpcs.fastRecreate.sqlFilePath']] - println "100) *** $log_file $error_file".toString() - - def sout = new StringBuilder(), serr = new StringBuilder() - def sqlplus= """sqlplus.exe ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} ${db.logfile}""".execute() - sqlplus.consumeProcessOutput(sout, serr) - sqlplus.waitFor() - - println "1) ### ${sqlplus.exitValue()}" - println "out> $sout err> $serr" - - // Write to console - System.out.println(sout.toString()) - - // Write to logfile - File f = new File(log_file) - f.write(sout.toString()) - - // Write to error file - f = new File(error_file) - f.write(sout.toString()) - - /* Check for errors */ - if (sqlplus.exitValue() != 0 || (serr != null && serr.toString().length() > 0)) { - throw new GradleException(String.format(project.properties['error.message'], sqlplus.exitValue(), name)) - } -} - -/** - * Prepare vocabulary update by creating source table - */ -task createSourceTable(dependsOn: fastRecreate) << { - println '/** ' - println '* "Create source table" Action ' - println '**/ ' - - def log_file = "$tempDir.path\\${project.properties['hcpcs.createSourceTable.logFileName']}" - def error_file = "$tempDir.path\\${project.properties['hcpcs.createSourceTable.errFileName']}" - - def db = [un: project.properties['hcpcs.db.userName'], pw: project.properties['hcpcs.db.password'], tns: project.properties['hcpcs.db.tnsName'], - sqlfile: project.properties['hcpcs.createSourceTable.sqlFilePath']] - println "100) *** $log_file $error_file".toString() - - def sout = new StringBuilder(), serr = new StringBuilder() - def sqlplus= """sqlplus.exe ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} ${db.logfile}""".execute() - sqlplus.consumeProcessOutput(sout, serr) - sqlplus.waitFor() - - println "1) ### ${sqlplus.exitValue()}" - println "out> $sout err> $serr" - - // Write to console - System.out.println(sout.toString()) - - // Write to logfile - File f = new File(log_file) - f.write(sout.toString()) - - // Write to error file - f = new File(error_file) - f.write(sout.toString()) - - /* Check for errors */ - if (sqlplus.exitValue() != 0 || (serr != null && serr.toString().length() > 0)) { - throw new GradleException(String.format($project.properties['error.message'], sqlplus.exitValue(), name)) - } -} - -/** - * Download vocabulary update pack - */ -task downloadUpdatePack(dependsOn: createSourceTable) << { - println '/** ' - println '* "Download" Action ' - println '**/ ' - - /* Downloading file */ - def timeStart = System.currentTimeMillis() - println '\tDownloading file...' - println "\t\tStored to: $tempDir.path" - ant.get(src: project.properties['hcpcs.downloadUpdatePack.fileUrl'], dest: tempDir, verbose: true) - println '\tDownload completed...' - - def timeFinish = System.currentTimeMillis() - def timeElapsed = (timeFinish - timeStart)/1000 - println "\tTime elapsed: $timeElapsed in seconds." -} - -task extractFiles(dependsOn: downloadUpdatePack) << { - println '/** ' + - '* "Extract" Action ' + - '**/ ' - - /* Extracting file */ - def fileList = [] - tempDir.eachFile(FileType.FILES) { file -> - fileList << file - if (file.getPath().endsWith('zip')) { - ant.unzip(src: file.getPath(), dest: tempDir, overwrite: false) - println('\t\tunzipped...') - } - } -} - -/** - * Convert from Microsoft Excel to CSV - */ -task xls2Csv(dependsOn: extractFiles) << { - println '/** ' - println '* "Convert" Action ' - println '**/ ' - - def inputFile = "$tempDir.path\\${project.properties['hcpcs.xls2Csv.srcFileName']}" - def outputFile = "$tempDir.path\\${project.properties['hcpcs.xls2Csv.destFileName']}" - - // For storing data into CSV files - StringBuffer data = new StringBuffer(); - try { - FileOutputStream fos = new FileOutputStream(outputFile); - - // Get the workbook object for XLS file - Workbook workbook = WorkbookFactory.create(new FileInputStream(inputFile)); - // Get first sheet from the workbook - Sheet sheet = workbook.getSheetAt(0); -// Cell cell; -// Row row; - - for (int i = 0; i < sheet.getLastRowNum(); i++){ - Row row = sheet.getRow(i); - - if (row!= null){ - for (int j = 0; j < row.getLastCellNum(); j++){ - Cell cell = row.getCell(j); - if (cell == null){ - data.append(";"); - } else { - cell.setCellType(Cell.CELL_TYPE_STRING) - data.append("\"" + cell. toString().trim().replaceAll("\"", "'") + "\"" + ";"); -// switch (cell.getCellType()) { -// case Cell.CELL_TYPE_BOOLEAN: -// data.append("\"" + cell.getBooleanCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_NUMERIC: -// data.append("\"" + cell.cgetNumericCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_STRING: -//// if (!cell.getStringCellValue().contains("\"")){ -// println cell.toString() -// data.append("\"" + cell.getStringCellValue().trim().replaceAll("\"", "'") + "\"" + ";"); -//// } else { -//// data.append(";"); -//// } -// break; -// -// case Cell.CELL_TYPE_BLANK: -// data.append("" + ";"); -// break; -// -// default: -// data.append(cell + ";"); -// } - - - - } - } - data.append('\n'); - } else { - - } - } - - // Iterate through each rows from first sheet -// Iterator rowIterator = sheet.iterator(); -// while (rowIterator.hasNext()) { -// row = rowIterator.next(); -// // For each row, iterate through each columns -// Iterator cellIterator = row.cellIterator(); -// while (cellIterator.hasNext()) { -// cell = cellIterator.next(); -// -// switch (cell.getCellType()) { -// case Cell.CELL_TYPE_BOOLEAN: -// data.append("\"" + cell.getBooleanCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_NUMERIC: -// data.append("\"" + cell.getNumericCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_STRING: -// data.append("\"" + cell.getStringCellValue().trim() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_BLANK: -// data.append("" + ";"); -// break; -// -// default: -// data.append(cell + ";"); -// } -// -// } -// -// } - - fos.write(data.toString().getBytes()); - fos.close(); - } - catch (FileNotFoundException e) { - e.printStackTrace(); - } - catch (IOException e) { - e.printStackTrace(); - } -} - -/** - * Import downloaded and converted data - */ -task importData(dependsOn: xls2Csv) << { - println '/** ' - println '* "Import" Action ' - println '**/ ' - - def dataFile = "$tempDir.path\\${project.properties['hcpcs.importData.dataFileName']}" - println '!!!!' + dataFile - println '!!!!' + new File(dataFile).exists() - def logFile = "$tempDir.path\\${project.properties['hcpcs.importData.logFileName']}" - def discardFile = "$tempDir.path\\${project.properties['hcpcs.importData.discardFileName']}" - def badFile = "$tempDir.path\\${project.properties['hcpcs.importData.badFileName']}" - - exec { - println "2) !!!!!!!!!!!!!" + Thread.currentThread().getId() - executable "sqlldr.exe" - args "USERID=${project.properties['hcpcs.db.userName']}/${project.properties['hcpcs.db.password']}@${project.properties['hcpcs.db.tnsName']} " + - "CONTROL=${project.properties['hcpcs.import.controlFilePath']} DATA=$dataFile LOG=$logFile DISCARD=$discardFile BAD=$badFile" - } -/* - commandLine "sqlldr.exe" - args "USERID=$userName/$password CONTROL=$controlFile DATA=$dataFile LOG=$logFile DISCARD=$discardFile" - standardOutput = new ByteArrayOutputStream() - ext.output = { - return standardOutput.toString() - } -*/ -} - -/** - * Load stage - */ -task runLoadStageScript(dependsOn: importData) << { - println '/** ' - println '* "LoadStage" Action ' - println '**/ ' - - def log_file = "$tempDir.path\\${project.properties['hcpcs.loadStage.logFileName']}" - def error_file = "$tempDir.path\\${project.properties['hcpcs.loadStage.errFileName']}" - - def db = [un: project.properties['hcpcs.db.userName'], pw: project.properties['hcpcs.db.password'], tns: project.properties['hcpcs.db.tnsName'], - sqlfile: project.properties['hcpcs.loadStage.sqlFilePath'], logfile: log_file] - println "200) *** $log_file $error_file" - - def sout = new StringBuilder(), serr = new StringBuilder() - def sqlplus= """sqlplus.exe ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} ${db.logfile}""".execute() - sqlplus.consumeProcessOutput(sout, serr) - sqlplus.waitFor() - - println "2) ###" + sqlplus.exitValue() - println "out> $sout err> $serr" - - // Write to console - System.out.println(sout.toString()) - - // Write to logfile - File f = new File(log_file) - f.write(sout.toString()) - - // Write to error file - f = new File(error_file) - f.write(sout.toString()) - - /* Check for errors */ - if (sqlplus.exitValue() != 0 || (serr != null && serr.toString().length() > 0)) { - throw new GradleException(String.format(project.properties['error.message'], sqlplus.exitValue(), name)) - } -/* - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def logFile = path + "\\load_stage.log" - println "1) ###" + logFile - def loadStageFile = 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\test1.sql' - - exec { - println "5) !!!!!!!!!!!!!" + Thread.currentThread().getId() - executable "sqlplus.exe" - args "$userName/$password@orcl @$loadStageFile" - println "1) %%%" + args - } -*/ -} - -/** - * Run Generic Update - */ -task runGenericUpdate(dependsOn: runLoadStageScript) << { - println '/** ' - println '* "GenericUpdate" Action ' - println '**/ ' - - def log_file = "${tempDir.getPath()}\\${project.properties['hcpcs.genericUpdate.logFileName']}" - def error_file = "${tempDir.getPath()}\\${project.properties['hcpcs.genericUpdate.errFileName']}" - - def db = [un: project.properties['hcpcs.db.userName'], pw: project.properties['hcpcs.db.password'], tns: project.properties['hcpcs.db.tnsName'], - sqlfile: project.properties['hcpcs.genericUpdate.sqlFilePath'], logfile: log_file] - println "300) *** $log_file $error_file" - - def sout = new StringBuilder(), serr = new StringBuilder() - def sqlplus= """sqlplus.exe ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} ${db.logfile}""".execute() - sqlplus.consumeProcessOutput(sout, serr) - sqlplus.waitFor() - - println "3) ### ${sqlplus.exitValue()}" - println "out> $sout err> $serr" - - // Write to console - System.out.println(sout.toString()) - - // Write to logfile - File f = new File(log_file) - f.write(sout.toString()) - - // Write to error file - f = new File(error_file) - f.write(sout.toString()) - - /* Check for errors */ - if (sqlplus.exitValue() != 0 || (serr != null && serr.toString().length() > 0)) { - throw new GradleException(String.format(project.properties['error.message'], sqlplus.exitValue(), name)) - } -/* - def path = tempDir.getPath() - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def logFile = path + "\\generic_update.log" - println "2) ###" + logFile - def $genericUpdateFile = "E:\\Vocabulary_Data\\DEV_HCPCS\\update\\test2.sql" - - exec { - println "6) !!!!!!!!!!!!!" + Thread.currentThread().getId() - executable "sqlplus.exe" - args "$userName/$password@orcl @$genericUpdateFile" - println "2) %%%" + args - } -*/ -} - -/* -task runLoadStageScript(type: Exec) { - def path = tempDir.getPath() - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def loadStageFile = 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\02.load_stage.sql' - def logFile = path + "load_stage.log" - - workDir = tempDir - - commandLine = "sqlplus /nolog $userName/$password @$loadStageFile > $logFile" - - standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -} - -task runGenericUpdate(type: Exec) { - def path = tempDir.getPath() - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def genericUpdateFile = 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\02.load_stage.sql' - def logFile = path + "generic_update.log" - - workDir = tempDir - - commandLine = "sqlplus /nolog $userName/$password @$genericUpdateFile > $logFile" - - standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -} - - FileInputStream fis = new FileInputStream(filename); - Workbook wb = new XSSFWorkbook(fis); - Sheet sheet = wb.getSheetAt(0); - for (Row row : sheet) { - for (Cell cell : row) { - doSomething(cell.toString()) - } - - } -*/ - -/** - * Just bootstrap task - */ -task startUpdate(dependsOn: runGenericUpdate) diff --git a/backup/build_HCPCS_old.gradle b/backup/build_HCPCS_old.gradle deleted file mode 100644 index 5b9bccd..0000000 --- a/backup/build_HCPCS_old.gradle +++ /dev/null @@ -1,401 +0,0 @@ -group 'com.sci.vocabulary' -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 - -/*repositories { - mavenLocal() - mavenCentral() -}*/ - -/*dependencies { - compile 'org.apache.poi:poi:3.9' - compile 'org.apache.poi:poi-ooxml:3.9' -}*/ - -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - } -} - -import groovy.io.FileType -import org.apache.poi.ss.usermodel.Cell -import org.apache.poi.ss.usermodel.Row -import org.apache.poi.ss.usermodel.Workbook -import org.apache.poi.ss.usermodel.WorkbookFactory -import org.apache.poi.ss.usermodel.Sheet - -/*** - * Vocabulary update - * Version 0.0.2 - */ - -def fileUrl = 'https://www.cms.gov/Medicare/Coding/HCPCSReleaseCodeSets/Downloads/2017-Alpha-Numeric-HCPCS-File.zip' -def tempDir = File.createTempDir() -def inputFile = tempDir.getPath() + "\\" + "HCPC17_CONTR_ANWEB.xlsx" -def outputFile = tempDir.getPath() + "\\" + "ANWEB_V2.csv" - -task prepareUpdate << { - println '*** Create source table action ***' - - def path = tempDir.getPath() - def _log_file = path + '\\create_source_table.log' - def _error_file = path + '\\create_source_table.err' - - def db = [un : 'DEV_HCPCS1', pw :'DEV_HCPCS1',tns :'ORCL', sqlfile: 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\00.create_source_tables.sql'] - println '100) *** ' + _log_file + ' ' + _error_file - - def sout = new StringBuilder(), serr = new StringBuilder() - def sqlplus= """sqlplus ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} >${db.logfile}""".execute() - sqlplus.consumeProcessOutput(sout, serr) - sqlplus.waitFor() - - println "1) ###" + sqlplus.exitValue() - println "out> $sout err> $serr" - - File f = new File(_log_file) - f.write(sout.toString()) - - f = new File(_error_file) - f.write(sout.toString()) - - if (serr != null && serr.toString().length() > 0) { - throw new GradleException('Error occurred when "prepareUpdate" executed...') - } - -} - -task downloadUpdatePack() << { - println '*** Download action ***' - println "4) !!!!!!!!!!!!!" + Thread.currentThread().getId() - - /* Downloading file */ - def timeStart = System.currentTimeMillis() - println '\tDownloading file' - println '\t\tStored to: ' + tempDir.getPath() - ant.get(src: fileUrl, dest: tempDir, verbose: true) - println '\tDownload completed...' - - def timeFinish = System.currentTimeMillis() - def timeElapsed = timeFinish - timeStart - println '\tTime elapsed: ' + timeElapsed / 1000 + ' in seconds.' -} - -task extractFiles() << { - println '*** Extract action ***' - println "3) !!!!!!!!!!!!!" + Thread.currentThread().getId() - - /* Extracting file */ - def fileList = [] - def dir = tempDir - dir.eachFile(FileType.FILES) { file -> - fileList << file - if (file.getPath().endsWith('zip')) { - ant.unzip(src: file.getPath(), dest: tempDir, overwrite: false) - println('\t\tunzipped...') - } - } -} - -task xls2Csv << { - println '*** Convert action ***' - - println "1) !!!!!!!!!!!!!" + Thread.currentThread().getId() - // For storing data into CSV files - StringBuffer data = new StringBuffer(); - try { - FileOutputStream fos = new FileOutputStream(outputFile); - - // Get the workbook object for XLS file - Workbook workbook = WorkbookFactory.create(new FileInputStream(inputFile)); - // Get first sheet from the workbook - Sheet sheet = workbook.getSheetAt(0); -// Cell cell; -// Row row; - - for (int i = 0; i < sheet.getLastRowNum(); i++){ - Row row = sheet.getRow(i); - - if (row!= null){ - for (int j = 0; j < row.getLastCellNum(); j++){ - Cell cell = row.getCell(j); - if (cell == null){ - data.append(";"); - } else { - cell.setCellType(Cell.CELL_TYPE_STRING) - data.append("\"" + cell. toString().trim().replaceAll("\"", "'") + "\"" + ";"); -// switch (cell.getCellType()) { -// case Cell.CELL_TYPE_BOOLEAN: -// data.append("\"" + cell.getBooleanCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_NUMERIC: -// data.append("\"" + cell.cgetNumericCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_STRING: -//// if (!cell.getStringCellValue().contains("\"")){ -// println cell.toString() -// data.append("\"" + cell.getStringCellValue().trim().replaceAll("\"", "'") + "\"" + ";"); -//// } else { -//// data.append(";"); -//// } -// break; -// -// case Cell.CELL_TYPE_BLANK: -// data.append("" + ";"); -// break; -// -// default: -// data.append(cell + ";"); -// } - - - - } - } - data.append('\n'); - } else { - - } - } - - // Iterate through each rows from first sheet -// Iterator rowIterator = sheet.iterator(); -// while (rowIterator.hasNext()) { -// row = rowIterator.next(); -// // For each row, iterate through each columns -// Iterator cellIterator = row.cellIterator(); -// while (cellIterator.hasNext()) { -// cell = cellIterator.next(); -// -// switch (cell.getCellType()) { -// case Cell.CELL_TYPE_BOOLEAN: -// data.append("\"" + cell.getBooleanCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_NUMERIC: -// data.append("\"" + cell.getNumericCellValue() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_STRING: -// data.append("\"" + cell.getStringCellValue().trim() + "\"" + ";"); -// break; -// -// case Cell.CELL_TYPE_BLANK: -// data.append("" + ";"); -// break; -// -// default: -// data.append(cell + ";"); -// } -// -// } -// -// } - - fos.write(data.toString().getBytes()); - fos.close(); - } - catch (FileNotFoundException e) { - e.printStackTrace(); - } - catch (IOException e) { - e.printStackTrace(); - } -} - -task task1(type:Exec) { - commandLine 'sqlldr' -} - -task importData << { - println '*** Import action ***' - - def path = tempDir.getPath() - def userName = 'DEV_HCPCS1' - def password = 'DEV_HCPCS1' - def controlFile = 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\2016-Alpha-Numeric-HCPCS-File\\ANWEB_V2.ctl' - def dataFile = path + "\\" + "ANWEB_V2.csv" - println '!!!!' + dataFile - println '!!!!' + new File(dataFile).exists() - def logFile = path + "\\" + "ANWEB_V2.log" - def discardFile = path + "\\" + "ANWEB_V2.dsc" - - exec { - println "2) !!!!!!!!!!!!!" + Thread.currentThread().getId() - executable "sqlldr" - args "USERID=$userName/$password@ORCL CONTROL=$controlFile DATA=$dataFile LOG=$logFile DISCARD=$discardFile" - } - - - //commandLine "sqlldr" - -// args "USERID=$userName/$password CONTROL=$controlFile DATA=$dataFile LOG=$logFile DISCARD=$discardFile" - -/* standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -*/ -} - -task runLoadStageScript << { - println '*** LoadStage action ***' - - def path = tempDir.getPath() - def _log_file = path + '\\load_stage.log' - def _error_file = path + '\\load_stage.err' - - def db = [un : 'DEV_HCPCS1', pw :'DEV_HCPCS1',tns :'ORCL', sqlfile: 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\02.load_stage.sql ', logfile: _log_file] - println '200) *** ' + _log_file + ' ' + _error_file - - def sout = new StringBuilder(), serr = new StringBuilder() - def sqlplus= """sqlplus ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} >${db.logfile}""".execute() - sqlplus.consumeProcessOutput(sout, serr) - sqlplus.waitFor() - - println "2) ###" + sqlplus.exitValue() - println "out> $sout err> $serr" - - File f = new File(_log_file) - f.write(sout.toString()) - - f = new File(_error_file) - f.write(sout.toString()) - - if (serr != null && serr.toString().length() > 0) { - throw new GradleException('Error occurred when "loadStage" executed...') - } - -/* - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def logFile = path + "\\load_stage.log" - println "1) ###" + logFile - def loadStageFile = 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\test1.sql' - - exec { - println "5) !!!!!!!!!!!!!" + Thread.currentThread().getId() - executable "sqlplus" - args "$userName/$password@orcl @$loadStageFile" - println "1) %%%" + args - } -*/ -} - -task runGenericUpdate << { - println '*** GenericUpdate action ***' - - def path = tempDir.getPath() - def _log_file = path + '\\generic_update.log' - def _error_file = path + '\\generic_update.err' - - def db = [un : 'DEV_HCPCS1', pw :'DEV_HCPCS1',tns :'ORCL', sqlfile: 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\03.generic_update.sql', logfile: _log_file] - println '300) *** ' + _log_file + ' ' + _error_file - - def sout = new StringBuilder(), serr = new StringBuilder() - def sqlplus= """sqlplus ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} >${db.logfile}""".execute() - sqlplus.consumeProcessOutput(sout, serr) - sqlplus.waitFor() - - println "3) ###" + sqlplus.exitValue() - println "out> $sout err> $serr" - - File f = new File(_log_file) - f.write(sout.toString()) - - f = new File(_error_file) - f.write(sout.toString()) - - if (serr != null && serr.toString().length() > 0) { - throw new GradleException('Error occurred when "genericUpdate" executed...') - } - - -/* - def path = tempDir.getPath() - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def logFile = path + "\\generic_update.log" - println "2) ###" + logFile - def $genericUpdateFile = "E:\\Vocabulary_Data\\DEV_HCPCS\\update\\test2.sql" - - exec { - println "6) !!!!!!!!!!!!!" + Thread.currentThread().getId() - executable "sqlplus" - args "$userName/$password@orcl @$genericUpdateFile" - println "2) %%%" + args - } -*/ - -} - -task startUpdate - -/*task runLoadStageScript(type: Exec) { - def path = tempDir.getPath() - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def loadStageFile = 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\02.load_stage.sql' - def logFile = path + "load_stage.log" - - workDir = tempDir - - commandLine = "sqlplus /nolog $userName/$password @$loadStageFile > $logFile" - - standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -} - -task runGenericUpdate(type: Exec) { - def path = tempDir.getPath() - def userName = 'DEV_HCPCS' - def password = 'DEV_HCPCS' - def genericUpdateFile = 'E:\\Vocabulary_Data\\DEV_HCPCS\\update\\02.load_stage.sql' - def logFile = path + "generic_update.log" - - workDir = tempDir - - commandLine = "sqlplus /nolog $userName/$password @$genericUpdateFile > $logFile" - - standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -}*/ - - -downloadUpdatePack.dependsOn(prepareUpdate) -extractFiles.dependsOn(downloadUpdatePack) -xls2Csv.dependsOn(extractFiles) -importData.dependsOn(xls2Csv) -runLoadStageScript.dependsOn(importData) -runGenericUpdate.dependsOn(runLoadStageScript) -startUpdate.dependsOn(runGenericUpdate) - -/* - FileInputStream fis = new FileInputStream(filename); - Workbook wb = new XSSFWorkbook(fis); - Sheet sheet = wb.getSheetAt(0); - for (Row row : sheet) { - for (Cell cell : row) { - doSomething(cell.toString()) - } - - } -*/ \ No newline at end of file diff --git a/backup/build_ICD10CM.gradle_old b/backup/build_ICD10CM.gradle_old deleted file mode 100644 index e9b007e..0000000 --- a/backup/build_ICD10CM.gradle_old +++ /dev/null @@ -1,290 +0,0 @@ -group 'com.sci.vocabulary' -group 'com.sci.vocabulary' -version '1.0-SNAPSHOT' - -apply plugin: 'java' - -sourceCompatibility = 1.8 - -/*repositories { - mavenLocal() - mavenCentral() -}*/ - -/*dependencies { - compile 'org.apache.poi:poi:3.9' - compile 'org.apache.poi:poi-ooxml:3.9' -}*/ - -buildscript { - repositories { - mavenLocal() - mavenCentral() - } - dependencies { - classpath 'org.apache.poi:poi:3.9' - classpath 'org.apache.poi:poi-ooxml:3.9' - } -} - -import groovy.io.FileType -import org.apache.poi.ss.usermodel.Cell -import org.apache.poi.ss.usermodel.Row -import org.apache.poi.ss.usermodel.Workbook -import org.apache.poi.ss.usermodel.WorkbookFactory -import org.apache.poi.ss.usermodel.Sheet - -/*** - * ICD10CM vocabulary update - * Version 0.0.3 - */ - -def fileUrl = 'ftp://ftp.cdc.gov/pub/Health_Statistics/NCHS/Publications/ICD10CM/2017/icd10cm_order_2017.txt' -def tempDir = File.createTempDir() -def oldFileName = 'icd10cm_order_2017.txt' -def newFileName = 'icd10cm.txt' - -task prepareUpdate << { - println '*** Create source table action ***' - - def path = tempDir.getPath() - def _log_file = path + '\\create_source_table.log' - def _error_file = path + '\\create_source_table.err' - - def db = [un : 'DEV_ICD10CM', pw :'DEV_ICD10CM',tns :'ORCL', sqlfile: 'E:\\Vocabulary_Data\\DEV_ICD10CM\\update\\create_source_tables.sql', logfile: _log_file] - println '100) *** ' + db.logfile - - def sout = new StringBuilder(), serr = new StringBuilder() - def sqlplus= """sqlplus.exe ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} >${db.logfile}""".execute() - sqlplus.consumeProcessOutput(sout, serr) - sqlplus.waitFor() - - println "1) ###" + sqlplus.exitValue() - println "out> $sout err> $serr" - - File f = new File(_log_file) - f.write(sout.toString()) - - f = new File(_error_file) - f.write(sout.toString()) - - /*if (serr != null && serr.toString().length() > 0) { - throw new GradleException('Error occurred when "prepareUpdate" executed...') - }*/ - - -} - -task downloadUpdatePack() << { - println '*** Download action ***' - println "4) !!!!!!!!!!!!!" + Thread.currentThread().getId() - - /* Downloading file */ - def timeStart = System.currentTimeMillis() - println '\tDownloading file' - println '\t\tStored to: ' + tempDir.getPath() - ant.get(src: fileUrl, dest: tempDir, verbose: true) - println '\tDownload completed...' - - def timeFinish = System.currentTimeMillis() - def timeElapsed = timeFinish - timeStart - println '\tTime elapsed: ' + timeElapsed / 1000 + ' in seconds.' -} - -task renameFile() << { - println '*** Rename action ***' - println "3) !!!!!!!!!!!!!" + Thread.currentThread().getId() - - def path = tempDir.getPath() - File fOld = new File(path + "\\" + oldFileName) - File fNew = new File(path + "\\" + newFileName) - - if (fNew.exists()) { - throw new IOException("File '$newFileName' already exists!") - } - - boolean isSuccess = fOld.renameTo(fNew); - - println 'Is file renamed: ' + isSuccess -} - -task importData << { - println '*** Import action ***' - - def path = tempDir.getPath() - def userName = 'DEV_ICD10CM' - def password = 'DEV_ICD10CM' - - def controlFile = 'E:\\Vocabulary_Data\\DEV_ICD10CM\\update\\icd10cm.ctl' - def dataFile = path + "\\" + newFileName - - println '!!!!' + dataFile - println '!!!!' + new File(dataFile).exists() - def logFile = path + "\\" + "icd10cm.log" - def discardFile = path + "\\" + "icd10cm.dsc" - - exec { - println "2) !!!!!!!!!!!!!" + Thread.currentThread().getId() - executable "sqlldr.exe" - args "USERID=$userName/$password@ORCL CONTROL=$controlFile DATA=$dataFile LOG=$logFile DISCARD=$discardFile" - } - - - //commandLine "sqlldr.exe" - -// args "USERID=$userName/$password CONTROL=$controlFile DATA=$dataFile LOG=$logFile DISCARD=$discardFile" - -/* standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -*/ -} - -task runLoadStageScript << { - println '*** LoadStage action ***' - - def path = tempDir.getPath() - def _log_file = path + '\\load_stage.log' - def _error_file = path + '\\load_stage.err' - - def db = [un : 'DEV_ICD10CM', pw :'DEV_ICD10CM',tns :'ORCL', sqlfile: 'E:\\Vocabulary_Data\\DEV_ICD10CM\\update\\load_stage.sql', logfile: _log_file] - println '200) *** ' + db.logfile - - def sout = new StringBuilder(), serr = new StringBuilder() - def sqlplus= """sqlplus.exe ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} >${db.logfile}""".execute() - sqlplus.consumeProcessOutput(sout, serr) - sqlplus.waitFor() - - println "2) ###" + sqlplus.exitValue() - println "out> $sout err> $serr" - - File f = new File(_log_file) - f.write(sout.toString()) - - f = new File(_error_file) - f.write(sout.toString()) - - /*if (serr != null && serr.toString().length() > 0) { - throw new GradleException('Error occurred when "loadStageScript" executed...') - }*/ - -/* - def userName = 'DEV_ICD10CM' - def password = 'DEV_ICD10CM' - def logFile = path + "\\load_stage.log" - println "1) ###" + logFile - def loadStageFile = 'E:\\Vocabulary_Data\\DEV_ICD10CM\\update\\test1.sql' - - exec { - println "5) !!!!!!!!!!!!!" + Thread.currentThread().getId() - executable "sqlplus.exe" - args "$userName/$password@orcl @$loadStageFile" - println "1) %%%" + args - } -*/ -} - -task runGenericUpdate << { - println '*** GenericUpdate action ***' - - def path = tempDir.getPath() - def _log_file = path + '\\generic_update.log' - def _error_file = path + '\\generic_update.err' - - def db = [un : 'DEV_ICD10CM', pw :'DEV_ICD10CM',tns :'ORCL', sqlfile: 'E:\\Vocabulary_Data\\DEV_ICD10CM\\update\\generic_update.sql', logfile: _log_file] - println '300) *** ' + db.logfile - - def sout = new StringBuilder(), serr = new StringBuilder() - def sqlplus= """sqlplus.exe ${db.un}/${db.pw}@${db.tns} @${db.sqlfile} >${db.logfile}""".execute() - sqlplus.consumeProcessOutput(sout, serr) - sqlplus.waitFor() - - println "3) ###" + sqlplus.exitValue() - println "out> $sout err> $serr" - - File f = new File(_log_file) - f.write(sout.toString()) - - f = new File(_error_file) - f.write(sout.toString()) - - /*if (serr != null && serr.toString().length() > 0) { - throw new GradleException('Error occurred when "genericUpdate" executed...') - }*/ - -/* - def path = tempDir.getPath() - def userName = 'DEV_ICD10CM' - def password = 'DEV_ICD10CM' - def logFile = path + "\\generic_update.log" - println "2) ###" + logFile - def $genericUpdateFile = "E:\\Vocabulary_Data\\DEV_ICD10CM\\update\\test2.sql" - - exec { - println "6) !!!!!!!!!!!!!" + Thread.currentThread().getId() - executable "sqlplus.exe" - args "$userName/$password@orcl @$genericUpdateFile" - println "2) %%%" + args - } -*/ - -} - -task startUpdate - -/*task runLoadStageScript(type: Exec) { - def path = tempDir.getPath() - def userName = 'DEV_ICD10CM' - def password = 'DEV_ICD10CM' - def loadStageFile = 'E:\\Vocabulary_Data\\DEV_ICD10CM\\update\\02.load_stage.sql' - def logFile = path + "load_stage.log" - - workDir = tempDir - - commandLine = "sqlplus /nolog $userName/$password @$loadStageFile > $logFile" - - standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -} - -task runGenericUpdate(type: Exec) { - def path = tempDir.getPath() - def userName = 'DEV_ICD10CM' - def password = 'DEV_ICD10CM' - def genericUpdateFile = 'E:\\Vocabulary_Data\\DEV_ICD10CM\\update\\02.load_stage.sql' - def logFile = path + "generic_update.log" - - workDir = tempDir - - commandLine = "sqlplus /nolog $userName/$password @$genericUpdateFile > $logFile" - - standardOutput = new ByteArrayOutputStream() - - ext.output = { - return standardOutput.toString() - } -}*/ - -downloadUpdatePack.dependsOn(prepareUpdate) -renameFile.dependsOn(downloadUpdatePack) -importData.dependsOn(renameFile) -runLoadStageScript.dependsOn(importData) -runGenericUpdate.dependsOn(runLoadStageScript) -startUpdate.dependsOn(runGenericUpdate) - -/* - FileInputStream fis = new FileInputStream(filename); - Workbook wb = new XSSFWorkbook(fis); - Sheet sheet = wb.getSheetAt(0); - for (Row row : sheet) { - for (Cell cell : row) { - doSomething(cell.toString()) - } - - } -*/ \ No newline at end of file diff --git a/backup/fileA.gradle b/backup/fileA.gradle deleted file mode 100644 index c2a47d5..0000000 --- a/backup/fileA.gradle +++ /dev/null @@ -1,164 +0,0 @@ -import java.awt.SystemColor - -//resolutionStrategy { -// libraries.each { -// libraryName, libraryList -> -// libraryList.each { -// library -> force library // 👈 this line -// } -// } - -// failOnVersionConflict() -//} - -task hello1 << { - println("tutorialspoin") -} - -task upper << { - String expString = "TURORIALS point" - println "Original: " + expString - println "Upper case: " + expString.toUpperCase() -} - -task count << { - 5.times { - print " $it" - } -} - -task groovyJDK << { - String myName = "Alexander" - myName.each { - println "${it}" - } - - println project.buildDir - println getProject().getBuildDir() - - project.buildDir = 'target' - println project.buildDir - getProject().setBuildDir "target_1" - println project.buildDir -} - -/* -repositories { - println "in a closure 1" -} - -repositories() { - println "in a closure 2" -} - -repositories({println "in a closure"}) -*/ - -String getValue() { - return "This is value" -} - -task 'getValueTask' << { - println getValue() -} - - -task taskX << { - println 'taskX' -} - - -taskX.dependsOn { - tasks.findAll { - task -> task.name.startsWith('lib') - } -} - -task lib1 << { - println 'lib1' -} -task lib2 << { - println 'lib2' -} -task notALib { - doLast { - println 'notALib' - } -} - -task copy(type: Copy) << { - description 'Ccpies the resource directory to the target directory.' - from 'resources' - into 'target' - include('**/*.txt', '**/*.xml', '**/*.gradle') - println("description applied") -} - -task eclipse_1 << { - println 'Hello Eclipse' -} - -eclipse_1.onlyIf { - project.hasProperty('usingEclipse') -} - -eclipse_1.doFirst { - if (!usingEclipse) { - throw new StopExecutionException() - } -} - -4.times { cnt -> - task "task$cnt" << { - println "I'm task number $cnt"; - } -} - -task0 {}.dependsOn task2, task3 - - -task hello << { - println 'Hello Earth' -} -hello.doFirst { - println 'Hello Venus' -} -hello.doLast { - println 'Hello Mars' -} -hello << { - println 'Hello Jupiter' -} - -task hello2 << { - println 'Hello world!' -} -hello2.doLast { - println "Greetings from the $hello.name task." -} - -task doSomething << { - println '\t\t\t do something....' -} - - -def count = 0 -new groovy.swing.SwingBuilder().frame(title: 'Frame', size: [300,300], show: true) { - borderLayout() - textLabel = label(text: "Click the button!", constraints: java.awt.BorderLayout.NORTH) - button(text: 'Click Me', - actionPerformed: {count++; textLabel.text = "Clicked ${count} time(s)."; println 'clicked'}, - constraints: java.awt.BorderLayout.SOUTH - ) -} - -task hello10 << { - println 'Hello again' -} - -hello10.doLast { - println 'New hello' -} - -println '#: ' + hello10.temporaryDir - diff --git a/backup/fileB.gradle b/backup/fileB.gradle deleted file mode 100644 index 7f9f1b0..0000000 --- a/backup/fileB.gradle +++ /dev/null @@ -1,13 +0,0 @@ -task hello - - -hello << { - println 'Hello' -} - -hello << { - println 'world' -} - - - diff --git a/backup/gradle.properties_old b/backup/gradle.properties_old deleted file mode 100644 index 2bcf6e9..0000000 --- a/backup/gradle.properties_old +++ /dev/null @@ -1,69 +0,0 @@ -#********************** -# Commom properties * -#********************** - -# Error messages -error.message=Error with code %d occured when '%s' executed... - - -#******************************************* -# Properties for HCPCS vocabulary update * -#******************************************* - -# Database -hcpcs.db.userName=DEV_HCPCS_TEMP -hcpcs.db.password=DEV_HCPCS_TEMP -hcpcs.db.tnsName=ORCL - -# Common process -hcpcs.downloadUpdatePack.fileUrl=https://www.cms.gov/Medicare/Coding/HCPCSReleaseCodeSets/Downloads/2017-Alpha-Numeric-HCPCS-File.zip - -# Fast recreate phase -hcpcs.fastRecreate.sqlFilePath=E:\\Vocabulary_Data\\DEV_HCPCS\\update\\00.fast_recreate_schema.sql -hcpcs.fastRecreate.logFileName=fast_recreate.log -hcpcs.fastRecreate.streamLogFileName=fast_recreate_stream.log -hcpcs.fastRecreate.streamErrFileName=fast_recreate_stream.err - -# Create source file phase -hcpcs.createSourceTable.sqlFilePath=E:\\Vocabulary_Data\\DEV_HCPCS\\update\\01.create_source_tables.sql -hcpcs.createSourceTable.logFileName=create_source_table.log -hcpcs.createSourceTable.errFileName=create_source_table.err - -# Import data phase -hcpcs.import.controlFilePath=E:\\Vocabulary_Data\\DEV_HCPCS\\update\\2016-Alpha-Numeric-HCPCS-File\\ANWEB_V2.ctl -hcpcs.importData.dataFileName=ANWEB_V2.csv -hcpcs.importData.logFileName=ANWEB_V2.log -hcpcs.importData.discardFileName=ANWEB_V2.dsc -hcpcs.importData.badFileName=ANWEB_V2.bad - -# Covert phase -hcpcs.xls2Csv.srcFileName=HCPC17_CONTR_ANWEB.xlsx -hcpcs.xls2Csv.destFileName=ANWEB_V2.csv - -# Load stage phase -hcpcs.loadStage.sqlFilePath=E:\\Vocabulary_Data\\DEV_HCPCS\\update\\03.load_stage.sql -hcpcs.loadStage.logFileName=load_stage.log -hcpcs.loadStage.errFileName=load_stage.err - -# Generic update phase -hcpcs.genericUpdate.sqlFilePath=E:\\Vocabulary_Data\\DEV_HCPCS\\update\\04.generic_update.sql -hcpcs.genericUpdate.logFileName=generic_update.err -hcpcs.genericUpdate.errFileName=generic_update.err - -#********************************************* -# Properties for ICD10CM vocabulary update * -#********************************************* - -# Database -icd10cm.db.userName=DEV_ICD10CM -icd10cm.db.password=DEV_ICD10CM -icd10cm.db.tnsName=ORCL -icd10cm.db.controlFileName=icd10cm.ctl -icd10cm.db.controlFilePath=E:\\Vocabulary_Data\\DEV_ICD10CM\\update\\$icd10cm.db.controlFileName - -# Common process -icd10cm.updatePackUrl=ftp://ftp.cdc.gov/pub/Health_Statistics/NCHS/Publications/ICD10CM/2017/icd10cm_order_2017.txt - - - - diff --git a/backup/gradle/wrapper/gradle-wrapper.jar b/backup/gradle/wrapper/gradle-wrapper.jar deleted file mode 100644 index 51288f9..0000000 Binary files a/backup/gradle/wrapper/gradle-wrapper.jar and /dev/null differ diff --git a/backup/gradle/wrapper/gradle-wrapper.properties b/backup/gradle/wrapper/gradle-wrapper.properties deleted file mode 100644 index a7e0b15..0000000 --- a/backup/gradle/wrapper/gradle-wrapper.properties +++ /dev/null @@ -1,6 +0,0 @@ -#Mon Jan 16 18:23:32 EET 2017 -distributionBase=GRADLE_USER_HOME -distributionPath=wrapper/dists -zipStoreBase=GRADLE_USER_HOME -zipStorePath=wrapper/dists -distributionUrl=https\://services.gradle.org/distributions/gradle-3.2.1-bin.zip diff --git a/backup/gradlew b/backup/gradlew deleted file mode 100644 index 4453cce..0000000 --- a/backup/gradlew +++ /dev/null @@ -1,172 +0,0 @@ -#!/usr/bin/env sh - -############################################################################## -## -## Gradle start up script for UN*X -## -############################################################################## - -# Attempt to set APP_HOME -# Resolve links: $0 may be a link -PRG="$0" -# Need this for relative symlinks. -while [ -h "$PRG" ] ; do - ls=`ls -ld "$PRG"` - link=`expr "$ls" : '.*-> \(.*\)$'` - if expr "$link" : '/.*' > /dev/null; then - PRG="$link" - else - PRG=`dirname "$PRG"`"/$link" - fi -done -SAVED="`pwd`" -cd "`dirname \"$PRG\"`/" >/dev/null -APP_HOME="`pwd -P`" -cd "$SAVED" >/dev/null - -APP_NAME="Gradle" -APP_BASE_NAME=`basename "$0"` - -# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script. -DEFAULT_JVM_OPTS="" - -# Use the maximum available, or set MAX_FD != -1 to use that value. -MAX_FD="maximum" - -warn ( ) { - echo "$*" -} - -die ( ) { - echo - echo "$*" - echo - exit 1 -} - -# OS specific support (must be 'true' or 'false'). -cygwin=false -msys=false -darwin=false -nonstop=false -case "`uname`" in - CYGWIN* ) - cygwin=true - ;; - Darwin* ) - darwin=true - ;; - MINGW* ) - msys=true - ;; - NONSTOP* ) - nonstop=true - ;; -esac - -CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar - -# Determine the Java command to use to start the JVM. -if [ -n "$JAVA_HOME" ] ; then - if [ -x "$JAVA_HOME/jre/sh/java" ] ; then - # IBM's JDK on AIX uses strange locations for the executables - JAVACMD="$JAVA_HOME/jre/sh/java" - else - JAVACMD="$JAVA_HOME/bin/java" - fi - if [ ! -x "$JAVACMD" ] ; then - die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME - -Please set the JAVA_HOME variable in your environment to match the -location of your Java installation." - fi -else - JAVACMD="java" - which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. - -Please set the JAVA_HOME variable in your environment to match the -location of your Java installation." -fi - -# Increase the maximum file descriptors if we can. -if [ "$cygwin" = "false" -a "$darwin" = "false" -a "$nonstop" = "false" ] ; then - MAX_FD_LIMIT=`ulimit -H -n` - if [ $? -eq 0 ] ; then - if [ "$MAX_FD" = "maximum" -o "$MAX_FD" = "max" ] ; then - MAX_FD="$MAX_FD_LIMIT" - fi - ulimit -n $MAX_FD - if [ $? -ne 0 ] ; then - warn "Could not set maximum file descriptor limit: $MAX_FD" - fi - else - warn "Could not query maximum file descriptor limit: $MAX_FD_LIMIT" - fi -fi - -# For Darwin, add options to specify how the application appears in the dock -if $darwin; then - GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\"" -fi - -# For Cygwin, switch paths to Windows format before running java -if $cygwin ; then - APP_HOME=`cygpath --path --mixed "$APP_HOME"` - CLASSPATH=`cygpath --path --mixed "$CLASSPATH"` - JAVACMD=`cygpath --unix "$JAVACMD"` - - # We build the pattern for arguments to be converted via cygpath - ROOTDIRSRAW=`find -L / -maxdepth 1 -mindepth 1 -type d 2>/dev/null` - SEP="" - for dir in $ROOTDIRSRAW ; do - ROOTDIRS="$ROOTDIRS$SEP$dir" - SEP="|" - done - OURCYGPATTERN="(^($ROOTDIRS))" - # Add a user-defined pattern to the cygpath arguments - if [ "$GRADLE_CYGPATTERN" != "" ] ; then - OURCYGPATTERN="$OURCYGPATTERN|($GRADLE_CYGPATTERN)" - fi - # Now convert the arguments - kludge to limit ourselves to /bin/sh - i=0 - for arg in "$@" ; do - CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -` - CHECK2=`echo "$arg"|egrep -c "^-"` ### Determine if an option - - if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then ### Added a condition - eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"` - else - eval `echo args$i`="\"$arg\"" - fi - i=$((i+1)) - done - case $i in - (0) set -- ;; - (1) set -- "$args0" ;; - (2) set -- "$args0" "$args1" ;; - (3) set -- "$args0" "$args1" "$args2" ;; - (4) set -- "$args0" "$args1" "$args2" "$args3" ;; - (5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;; - (6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;; - (7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;; - (8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;; - (9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;; - esac -fi - -# Escape application args -save ( ) { - for i do printf %s\\n "$i" | sed "s/'/'\\\\''/g;1s/^/'/;\$s/\$/' \\\\/" ; done - echo " " -} -APP_ARGS=$(save "$@") - -# Collect all arguments for the java command, following the shell quoting and substitution rules -eval set -- $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS "\"-Dorg.gradle.appname=$APP_BASE_NAME\"" -classpath "\"$CLASSPATH\"" org.gradle.wrapper.GradleWrapperMain "$APP_ARGS" - -# by default we should be in the correct project dir, but when run from Finder on Mac, the cwd is wrong -if [ "$(uname)" = "Darwin" ] && [ "$HOME" = "$PWD" ]; then - cd "$(dirname "$0")" -fi - -exec "$JAVACMD" "$@" diff --git a/backup/gradlew.bat b/backup/gradlew.bat deleted file mode 100644 index f955316..0000000 --- a/backup/gradlew.bat +++ /dev/null @@ -1,84 +0,0 @@ -@if "%DEBUG%" == "" @echo off -@rem ########################################################################## -@rem -@rem Gradle startup script for Windows -@rem -@rem ########################################################################## - -@rem Set local scope for the variables with windows NT shell -if "%OS%"=="Windows_NT" setlocal - -set DIRNAME=%~dp0 -if "%DIRNAME%" == "" set DIRNAME=. -set APP_BASE_NAME=%~n0 -set APP_HOME=%DIRNAME% - -@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script. -set DEFAULT_JVM_OPTS= - -@rem Find java.exe -if defined JAVA_HOME goto findJavaFromJavaHome - -set JAVA_EXE=java.exe -%JAVA_EXE% -version >NUL 2>&1 -if "%ERRORLEVEL%" == "0" goto init - -echo. -echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. -echo. -echo Please set the JAVA_HOME variable in your environment to match the -echo location of your Java installation. - -goto fail - -:findJavaFromJavaHome -set JAVA_HOME=%JAVA_HOME:"=% -set JAVA_EXE=%JAVA_HOME%/bin/java.exe - -if exist "%JAVA_EXE%" goto init - -echo. -echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME% -echo. -echo Please set the JAVA_HOME variable in your environment to match the -echo location of your Java installation. - -goto fail - -:init -@rem Get command-line arguments, handling Windows variants - -if not "%OS%" == "Windows_NT" goto win9xME_args - -:win9xME_args -@rem Slurp the command line arguments. -set CMD_LINE_ARGS= -set _SKIP=2 - -:win9xME_args_slurp -if "x%~1" == "x" goto execute - -set CMD_LINE_ARGS=%* - -:execute -@rem Setup the command line - -set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar - -@rem Execute Gradle -"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %CMD_LINE_ARGS% - -:end -@rem End local scope for the variables with windows NT shell -if "%ERRORLEVEL%"=="0" goto mainEnd - -:fail -rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of -rem the _cmd.exe /c_ return code! -if not "" == "%GRADLE_EXIT_CONSOLE%" exit 1 -exit /b 1 - -:mainEnd -if "%OS%"=="Windows_NT" endlocal - -:omega diff --git a/build.gradle b/build.gradle new file mode 100644 index 0000000..2775ffd --- /dev/null +++ b/build.gradle @@ -0,0 +1,19 @@ +group 'com.sci.vocabulary' +version '1.0-SNAPSHOT' + +apply plugin: 'groovy' +apply plugin: 'java' + +sourceCompatibility = 1.8 + +repositories { + mavenCentral() + mavenLocal() +} + +dependencies { + compile 'org.codehaus.groovy:groovy-all:2.3.11' + testCompile group: 'junit', name: 'junit', version: '4.11' + testCompile group: 'junit', name: 'junit', version: '4.12' +} + diff --git a/gradle.properties b/gradle.properties deleted file mode 100644 index 7ae02cd..0000000 --- a/gradle.properties +++ /dev/null @@ -1,11 +0,0 @@ -#******************************************* -# Common properties of Vocabulary update * -# Version 0.0.5 * -#******************************************* -stop.on.error=true -# Error messages -error.message=Error %s occurred when the '%s' task executed... -error.message.with.code=Error with code '%d' occured when the '%s' task executed... - -# Memory configuration -org.gradle.jvmargs=-Xmx1024M \ No newline at end of file diff --git a/gradle/wrapper/gradle-wrapper.jar b/gradle/wrapper/gradle-wrapper.jar index 51288f9..70e33ab 100644 Binary files a/gradle/wrapper/gradle-wrapper.jar and b/gradle/wrapper/gradle-wrapper.jar differ diff --git a/gradle/wrapper/gradle-wrapper.properties b/gradle/wrapper/gradle-wrapper.properties index 2a312ef..af2c328 100644 --- a/gradle/wrapper/gradle-wrapper.properties +++ b/gradle/wrapper/gradle-wrapper.properties @@ -1,6 +1,6 @@ -#Mon Jan 16 18:23:09 EET 2017 +#Sun Apr 16 19:19:34 EEST 2017 distributionBase=GRADLE_USER_HOME distributionPath=wrapper/dists zipStoreBase=GRADLE_USER_HOME zipStorePath=wrapper/dists -distributionUrl=https\://services.gradle.org/distributions/gradle-3.2.1-bin.zip +distributionUrl=https\://services.gradle.org/distributions/gradle-3.3-all.zip diff --git a/gradlew b/gradlew old mode 100644 new mode 100755 diff --git a/gradlew.bat b/gradlew.bat index f955316..e95643d 100644 --- a/gradlew.bat +++ b/gradlew.bat @@ -1,84 +1,84 @@ -@if "%DEBUG%" == "" @echo off -@rem ########################################################################## -@rem -@rem Gradle startup script for Windows -@rem -@rem ########################################################################## - -@rem Set local scope for the variables with windows NT shell -if "%OS%"=="Windows_NT" setlocal - -set DIRNAME=%~dp0 -if "%DIRNAME%" == "" set DIRNAME=. -set APP_BASE_NAME=%~n0 -set APP_HOME=%DIRNAME% - -@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script. -set DEFAULT_JVM_OPTS= - -@rem Find java.exe -if defined JAVA_HOME goto findJavaFromJavaHome - -set JAVA_EXE=java.exe -%JAVA_EXE% -version >NUL 2>&1 -if "%ERRORLEVEL%" == "0" goto init - -echo. -echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. -echo. -echo Please set the JAVA_HOME variable in your environment to match the -echo location of your Java installation. - -goto fail - -:findJavaFromJavaHome -set JAVA_HOME=%JAVA_HOME:"=% -set JAVA_EXE=%JAVA_HOME%/bin/java.exe - -if exist "%JAVA_EXE%" goto init - -echo. -echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME% -echo. -echo Please set the JAVA_HOME variable in your environment to match the -echo location of your Java installation. - -goto fail - -:init -@rem Get command-line arguments, handling Windows variants - -if not "%OS%" == "Windows_NT" goto win9xME_args - -:win9xME_args -@rem Slurp the command line arguments. -set CMD_LINE_ARGS= -set _SKIP=2 - -:win9xME_args_slurp -if "x%~1" == "x" goto execute - -set CMD_LINE_ARGS=%* - -:execute -@rem Setup the command line - -set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar - -@rem Execute Gradle -"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %CMD_LINE_ARGS% - -:end -@rem End local scope for the variables with windows NT shell -if "%ERRORLEVEL%"=="0" goto mainEnd - -:fail -rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of -rem the _cmd.exe /c_ return code! -if not "" == "%GRADLE_EXIT_CONSOLE%" exit 1 -exit /b 1 - -:mainEnd -if "%OS%"=="Windows_NT" endlocal - -:omega +@if "%DEBUG%" == "" @echo off +@rem ########################################################################## +@rem +@rem Gradle startup script for Windows +@rem +@rem ########################################################################## + +@rem Set local scope for the variables with windows NT shell +if "%OS%"=="Windows_NT" setlocal + +set DIRNAME=%~dp0 +if "%DIRNAME%" == "" set DIRNAME=. +set APP_BASE_NAME=%~n0 +set APP_HOME=%DIRNAME% + +@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script. +set DEFAULT_JVM_OPTS= + +@rem Find java.exe +if defined JAVA_HOME goto findJavaFromJavaHome + +set JAVA_EXE=java.exe +%JAVA_EXE% -version >NUL 2>&1 +if "%ERRORLEVEL%" == "0" goto init + +echo. +echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. +echo. +echo Please set the JAVA_HOME variable in your environment to match the +echo location of your Java installation. + +goto fail + +:findJavaFromJavaHome +set JAVA_HOME=%JAVA_HOME:"=% +set JAVA_EXE=%JAVA_HOME%/bin/java.exe + +if exist "%JAVA_EXE%" goto init + +echo. +echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME% +echo. +echo Please set the JAVA_HOME variable in your environment to match the +echo location of your Java installation. + +goto fail + +:init +@rem Get command-line arguments, handling Windows variants + +if not "%OS%" == "Windows_NT" goto win9xME_args + +:win9xME_args +@rem Slurp the command line arguments. +set CMD_LINE_ARGS= +set _SKIP=2 + +:win9xME_args_slurp +if "x%~1" == "x" goto execute + +set CMD_LINE_ARGS=%* + +:execute +@rem Setup the command line + +set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar + +@rem Execute Gradle +"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %CMD_LINE_ARGS% + +:end +@rem End local scope for the variables with windows NT shell +if "%ERRORLEVEL%"=="0" goto mainEnd + +:fail +rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of +rem the _cmd.exe /c_ return code! +if not "" == "%GRADLE_EXIT_CONSOLE%" exit 1 +exit /b 1 + +:mainEnd +if "%OS%"=="Windows_NT" endlocal + +:omega diff --git a/root project 'GradleProject' b/root project 'GradleProject' deleted file mode 100644 index 643b63a..0000000 Binary files a/root project 'GradleProject' and /dev/null differ diff --git a/settings.gradle b/settings.gradle index dce15a6..c9aa110 100644 --- a/settings.gradle +++ b/settings.gradle @@ -1,19 +1,6 @@ -/* - * This settings file was auto generated by the Gradle buildInit task - * by 'sasha' at '4/17/17 10:52 AM' with Gradle 2.10 - * - * The settings file is used to specify which projects to include in your build. - * In a single project build this file can be empty or even removed. - * - * Detailed information about configuring a multi-project build in Gradle can be found - * in the user guide at https://docs.gradle.org/2.10/userguide/multi_project_builds.html - */ +rootProject.name = 'GradleProject' +rootProject.name = 'VocabularyUpdate' +include 'HSPCS' +include 'ICD10CM' +include 'LOINC' -/* -// To declare projects as part of a multi-project build use the 'include' method -include 'shared' -include 'api' -include 'services:webservice' -*/ - -rootProject.name = 'Vocabulary-Update' diff --git a/src/main/groovy/inc/odysses/tasks/ExecuteQuery b/src/main/groovy/inc/odysses/tasks/ExecuteQuery deleted file mode 100644 index 8937fa9..0000000 --- a/src/main/groovy/inc/odysses/tasks/ExecuteQuery +++ /dev/null @@ -1,15 +0,0 @@ -package inc.odysses.tasks - -class MyCustomTask extends DefaultTask { - @Input - String name = '' - - @Input - String version = '' - - @TaskAction - def build() { - println "\tname is: name" - println "\tversion is: version" - } -} diff --git a/src/main/java/inc/odysses/utils/StringBuilderWrapper.java b/src/main/java/inc/odysses/utils/StringBuilderWrapper.java deleted file mode 100644 index 3163f1a..0000000 --- a/src/main/java/inc/odysses/utils/StringBuilderWrapper.java +++ /dev/null @@ -1,33 +0,0 @@ -package inc.odysses.utils; - -import java.io.IOException; - -/** - * Created by Sanders on 3/16/2017. - */ -public class StringBuilderWrapper implements java.lang.Appendable { - private static final String IDENT_CHAR = " "; - - private StringBuilder wrapped = new StringBuilder(); - - @Override - public Appendable append(CharSequence csq) throws IOException { - wrapped.append(IDENT_CHAR).append(csq); - return this; - } - @Override - public Appendable append(CharSequence csq, int start, int end) throws IOException { - wrapped.append(IDENT_CHAR).append(csq, start, end); - return this; - - } - @Override - public Appendable append(char c) throws IOException { - wrapped.append(IDENT_CHAR).append(c); - return this; - } - @Override - public String toString() { - return wrapped.toString(); - } -} \ No newline at end of file diff --git a/vocabulary_data/dev_hcpcs/_backup/manual_table_data.csv b/vocabulary_data/dev_hcpcs/_backup/manual_table_data.csv deleted file mode 100644 index 08a94e1..0000000 --- a/vocabulary_data/dev_hcpcs/_backup/manual_table_data.csv +++ /dev/null @@ -1,1059 +0,0 @@ -CONCEPT_CODE_1,CONCEPT_NAME_1,CONCEPT_ID_2,CONCEPT_NAME_2,DOMAIN_ID,VOCABULARY_ID,INVALID_REASON,VALID_START_DATE,VALID_END_DATE,PRECEDENCE,CONVERSION_FACTOR -"%","%","8554","percent","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"%","percent","8554","percent","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"(e.g. liquid)","","","","","","","","","","" -"5% dextrose/water (500 ml = 1 unit)","","1560524","Glucose","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"Implant","","19082103","Injectable Solution","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","" -"Implant","","19082104","Injectable Suspension","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","3","" -"Implant","","19124968","Drug Implant","Drug","RxNorm","","2006-11-19 00:00:00","2099-12-31 00:00:00","1","" -"Infusion","","19082103","Injectable Solution","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","" -"Infusion","","19082104","Injectable Suspension","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","" -"Infusion","","46234469","Injection","Drug","RxNorm","","2015-07-06 00:00:00","2099-12-31 00:00:00","3","" -"Inhalant","","19018195","Inhalant","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","8","" -"Inhalant","","19082162","Nasal Inhalant","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","4","" -"Inhalant","","19082258","Gas for Inhalation","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","7","" -"Inhalant","","19082259","Inhalant Powder","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","" -"Inhalant","","19095898","Inhalant Solution","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","" -"Inhalant","","19126918","Metered Dose Inhaler","Drug","RxNorm","","2007-07-29 00:00:00","2099-12-31 00:00:00","3","" -"Inhalant","","19126919","Nasal Inhaler","Drug","RxNorm","","2007-07-29 00:00:00","2099-12-31 00:00:00","5","" -"Inhalant","","19127579","Dry Powder Inhaler","Drug","RxNorm","","2007-12-30 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-"daclizumab","","19036892","Daclizumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dactinomycin","","1311443","Dactinomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dalbavancin","","45774861","dalbavancin","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"dalfopristin","","1789517","dalfopristin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dalteparin sodium","","1301065","Dalteparin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"daptomycin","","1786617","Daptomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"darbepoetin alfa","","1304643","darbepoetin alfa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"daunorubicin","","1311799","Daunorubicin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"daunorubicin citrate","","1311799","Daunorubicin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"decitabine","","19024728","decitabine","Drug","RxNorm","","2006-11-19 00:00:00","2099-12-31 00:00:00","","" -"deferoxamine mesylate","","1711947","Deferoxamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"degarelix","","19058410","degarelix","Drug","RxNorm","","2009-01-04 00:00:00","2099-12-31 00:00:00","","" -"denileukin diftitox","","19051642","denileukin diftitox","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"denosumab","","40222444","denosumab","Drug","RxNorm","","2010-07-04 00:00:00","2099-12-31 00:00:00","","" -"depo-estradiol cypionate","","1548195","Estradiol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"desmopressin acetate","","1517070","desmopressin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dexamethasone","","1518254","Dexamethasone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dexamethasone 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supplement","","","","","","","","","","" -"diazepam","","723013","Diazepam","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"diazoxide","","1523280","Diazoxide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dicyclomine hcl","","924724","Dicyclomine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"didanosine (ddi)","","1724869","Didanosine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"diethylstilbestrol diphosphate","","1525866","Diethylstilbestrol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"digoxin","","19045317","digoxin antibodies Fab fragments","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"digoxin immune fab (ovine)","","19045317","digoxin antibodies Fab fragments","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dihydroergotamine mesylate","","1126557","Dihydroergotamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dimenhydrinate","","928744","Dimenhydrinate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dimercaprol","","1728903","Dimercaprol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"diphenhydramine hcl","","1129625","Diphenhydramine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"diphenhydramine hydrochloride","","1129625","Diphenhydramine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dipyridamole","","1331270","Dipyridamole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dmso","","928980","Dimethyl Sulfoxide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dobutamine hydrochloride","","1337720","Dobutamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"docetaxel","","1315942","docetaxel","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dolasetron mesylate","","903459","Dolasetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dopamine hcl","","1337860","Dopamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"doripenem","","1713905","doripenem","Drug","RxNorm","","2007-12-30 00:00:00","2099-12-31 00:00:00","","" -"dornase alfa","","1125443","Dornase Alfa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"doxercalciferol","","1512446","Doxercalciferol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"doxorubicin hydrochloride","","1338512","Doxorubicin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"doxorubicin hydrochloride liposomal","","19051649","doxorubicin liposome","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dronabinol","","40125879","Dronabinol","Drug","RxNorm","U","2005-11-13 00:00:00","2005-12-04 00:00:00","","" -"droperidol","","739323","Droperidol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"dyphylline","","1140088","Dyphylline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ecallantide","","40168938","ecallantide","Drug","RxNorm","","2010-01-03 00:00:00","2099-12-31 00:00:00","","" -"eculizumab","","19080458","eculizumab","Drug","RxNorm","","2007-04-29 00:00:00","2099-12-31 00:00:00","","" -"edetate calcium disodium","","43013616","Edetate Calcium","Drug","RxNorm","","2013-03-04 00:00:00","2099-12-31 00:00:00","","" -"edetate disodium","","19052936","edetate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"efalizumab","","936429","efalizumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"elosulfase alfa","","44814525","ELOSULFASE ALFA","Drug","RxNorm","","2014-04-07 00:00:00","2099-12-31 00:00:00","","" -"enfuvirtide","","1717002","enfuvirtide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"enoxaparin sodium","","1301025","Enoxaparin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"epifix","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"epirubicin hcl","","1344354","Epirubicin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"epoetin alfa","","1301125","Epoetin Alfa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"epoetin beta","","19001311","epoetin beta","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"epoprostenol","","1354118","Epoprostenol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"eptifibatide","","1322199","eptifibatide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ergonovine maleate","","1345205","Ergonovine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"eribulin mesylate","","40230712","eribulin","Drug","RxNorm","","2010-12-05 00:00:00","2099-12-31 00:00:00","","" -"ertapenem sodium","","1717963","ertapenem","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"erythromycin lactobionate","","1746940","Erythromycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"estradiol valerate","","1548195","Estradiol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"estrogen conjugated","","1549080","Estrogens, Conjugated (USP)","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"estrogen conjugated","","1549080","Estrogens, Conjugated (USP)","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","" -"estrone","","1549254","Estrone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"etanercept","","1151789","Etanercept","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ethanolamine oleate","","19095285","ethanolamine oleate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"etidronate disodium","","1552929","Etidronate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"etoposide","","1350504","Etoposide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"everolimus","","19011440","everolimus","Drug","RxNorm","","2009-05-03 00:00:00","2099-12-31 00:00:00","","" -"excellagen","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"exemestane","","1398399","exemestane","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix (antihemophilic factor","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix (antihemophilic factor, purified, non-recombinant)","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix (antihemophilic factor, recombinant), alprolix","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix (antihemophilic factor, recombinant), rixubis","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix, complex","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viia (antihemophilic factor","","1352141","Factor VIIa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii (antihemophilic factor","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii (antihemophilic factor (porcine))","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii (antihemophilic factor, human)","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii (antihemophilic factor, recombinant)","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii fc fusion (recombinant)","","45776421","efmoroctocog alfa","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"factor xiii (antihemophilic factor","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor xiii a-subunit","","45776421","efmoroctocog alfa","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"famotidine","","953076","Famotidine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fentanyl citrate","","1154029","Fentanyl","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ferric carboxymaltose","","43560392","ferric carboxymaltose","Drug","RxNorm","","2013-09-03 00:00:00","2099-12-31 00:00:00","","" -"ferric pyrophosphate citrate solution","","46221255","ferric pyrophosphate","Drug","RxNorm","","2015-05-04 00:00:00","2099-12-31 00:00:00","","" -"ferumoxytol","","40163731","ferumoxytol","Drug","RxNorm","","2009-08-02 00:00:00","2099-12-31 00:00:00","","" -"filgrastim (g-csf)","","1304850","Filgrastim","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"finasteride","","996416","Finasteride","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"floxuridine","","1355509","Floxuridine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fluconazole","","1754994","Fluconazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fludarabine phosphate","","1395557","fludarabine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"flunisolide","","1196514","flunisolide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fluocinolone acetonide","","996541","fluocinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fluocinolone acetonide intravitreal implant","","996541","fluocinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fluorouracil","","955632","Fluorouracil","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fluphenazine decanoate","","756018","Fluphenazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"flutamide","","1356461","Flutamide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"follitropin alfa","","1542948","Follitropin Alfa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"follitropin beta","","1597235","follitropin beta","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fomepizole","","19022479","fomepizole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fomivirsen sodium","","19048999","fomivirsen","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fondaparinux sodium","","1315865","fondaparinux","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"formoterol","","1196677","formoterol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"formoterol fumarate","","1196677","formoterol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fosaprepitant","","19022131","Fosaprepitant dimeglumine","Drug","RxNorm","","2008-03-02 00:00:00","2099-12-31 00:00:00","","" -"foscarnet sodium","","1724700","Foscarnet","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fosphenytoin","","713192","fosphenytoin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fosphenytoin sodium","","713192","fosphenytoin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fulvestrant","","1304044","fulvestrant","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"furosemide","","956874","Furosemide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadobenate dimeglumine (multihance multipack)","","19097468","Gadopentetate Dimeglumine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadobenate dimeglumine (multihance)","","19097468","Gadopentetate Dimeglumine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadobutrol","","19048493","gadobutrol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadofosveset trisodium","","43012718","gadofosveset","Drug","RxNorm","","2013-02-04 00:00:00","2099-12-31 00:00:00","","" -"gadoterate meglumine","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadoteridol","","19097463","gadoteridol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadoxetate disodium","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gallium nitrate","","42899259","Gallium","Drug","RxNorm","","2012-10-01 00:00:00","2099-12-31 00:00:00","","" -"galsulfase","","19078649","galsulfase","Drug","RxNorm","","2005-11-13 00:00:00","2099-12-31 00:00:00","","" -"gamma globulin","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ganciclovir","","1757803","Ganciclovir","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ganciclovir sodium","","1757803","Ganciclovir","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ganirelix acetate","","1536743","ganirelix","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"garamycin","","919345","Gentamicin Sulfate (USP)","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gatifloxacin","","1789276","gatifloxacin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gefitinib","","1319193","gefitinib","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gemcitabine hydrochloride","","1314924","gemcitabine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gemtuzumab ozogamicin","","19098566","gemtuzumab","Drug","RxNorm","D","1970-01-01 00:00:00","2016-05-01 00:00:00","","" -"glatiramer acetate","","751889","Glatiramer","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"glucagon hydrochloride","","1560278","Glucagon","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"glucarpidase","","42709319","glucarpidase","Drug","RxNorm","","2012-05-07 00:00:00","2099-12-31 00:00:00","","" -"glycopyrrolate","","963353","Glycopyrrolate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gm","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1000" -"gm","","8587","milliliter","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"gold sodium thiomalate","","1152134","Aurothiomalate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"golimumab","","19041065","golimumab","Drug","RxNorm","","2009-05-31 00:00:00","2099-12-31 00:00:00","","" -"gonadorelin hydrochloride","","19089810","Gonadorelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"goserelin acetate","","1366310","Goserelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"graftjacket xpress","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gram","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1000" -"gram","","8587","milliliter","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"grams","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1000" -"grams","","8587","milliliter","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"granisetron hydrochloride","","1000772","Granisetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"haloperidol","","766529","Haloperidol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"haloperidol decanoate","","766529","Haloperidol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hemin","","19067303","Hemin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"heparin sodium","","1367571","heparin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hepatitis b immune globulin (hepagam b)","","501343","hepatitis B immune globulin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hepatitis b vaccine","","528323","Hepatitis B Surface Antigen Vaccine","Drug","RxNorm","","2008-06-29 00:00:00","2099-12-31 00:00:00","","" -"hexaminolevulinate hydrochloride","","43532423","hexyl 5-aminolevulinate","Drug","RxNorm","","2013-07-01 00:00:00","2099-12-31 00:00:00","","" -"high risk population (use only with codes for immunization)","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"histrelin","","1366773","histrelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"histrelin acetate","","1366773","histrelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"home infusion therapy","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"human fibrinogen concentrate","","19044986","fibrinogen concentrate (human)","Drug","RxNorm","","2009-02-01 00:00:00","2099-12-31 00:00:00","","" -"human plasma fibrin sealant","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hyaluronan or derivative","","787787","hyaluronate","Drug","RxNorm","","2006-04-02 00:00:00","2099-12-31 00:00:00","","" -"hyaluronidase","","19073699","Hyaluronidase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydralazine hcl","","1373928","Hydralazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydrocortisone acetate","","975125","Hydrocortisone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydrocortisone sodium phosphate","","975125","Hydrocortisone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydrocortisone sodium phosphate","","975125","Hydrocortisone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","" -"hydrocortisone sodium succinate","","975125","Hydrocortisone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydromorphone","","1126658","Hydromorphone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydromorphone hydrochloride","","1126658","Hydromorphone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydroxyprogesterone caproate","","19077143","17-alpha-Hydroxyprogesterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydroxyurea","","1377141","hydroxyurea","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydroxyzine hcl","","777221","Hydroxyzine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydroxyzine pamoate","","777221","Hydroxyzine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hyoscyamine sulfate","","923672","Hyoscyamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hypertonic saline solution","","967823","Sodium Chloride","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"i.u.","","8510","unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"i.u.","","8718","international unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"ibandronate sodium","","1512480","Ibandronate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ibuprofen","","1177480","Ibuprofen","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ibutilide fumarate","","19050087","ibutilide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"icatibant","","40242044","icatibant","Drug","RxNorm","","2011-09-04 00:00:00","2099-12-31 00:00:00","","" -"idarubicin hydrochloride","","19078097","Idarubicin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"idursulfase","","19091430","idursulfase","Drug","RxNorm","","2006-08-27 00:00:00","2099-12-31 00:00:00","","" -"ifosfamide","","19078187","Ifosfamide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"iloprost","","1344992","Iloprost","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"imatinib","","1304107","imatinib","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"imiglucerase","","1348407","imiglucerase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin (bivigam)","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin (gammaplex)","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin (hizentra)","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin (privigen)","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin (vivaglobin)","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immunizations/vaccinations","","","","","","","","","","" -"incobotulinumtoxin a","","40224763","incobotulinumtoxinA","Drug","RxNorm","","2010-09-05 00:00:00","2099-12-31 00:00:00","","" -"infliximab","","937368","infliximab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"influenza vaccine, recombinant hemagglutinin antigens, for intramuscular use (flublok)","","","","","","","","","","" -"influenza virus vaccine","","","","","","","","","","" -"influenza virus vaccine, split virus, for intramuscular use (agriflu)","","","","","","","","","","" -"injectable anesthetic","","","","","","","","","","" -"injectable bulking agent","","","","","","","","","","" -"injectable poly-l-lactic acid","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"insulin","","","","","","","","","","" -"insulin intermediate acting (nph or lente)","","","","","","","","","","" -"insulin long acting","","","","","","","","","","" -"insulin most rapid onset (lispro or aspart)","","","","","","","","","","" -"insulin per 5 units","","","","","","","","","","" -"insulin rapid onset","","","","","","","","","","" -"interferon alfa-2a","","1379969","Interferon Alfa-2a","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"interferon alfa-2b","","1380068","Interferon Alfa-2b","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"interferon alfa-n3","","1385645","Interferon Alfa-n3","Drug","RxNorm","","2006-04-02 00:00:00","2099-12-31 00:00:00","","" -"interferon alfacon-1","","1781314","interferon alfacon-1","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"interferon beta-1a","","722424","Interferon beta-1a","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"interferon beta-1b","","713196","interferon beta-1b","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"interferon gamma 1-b","","1380191","Interferon gamma-1b","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"intravenous","","","","","","","","","","" -"ipilimumab","","40238188","ipilimumab","Drug","RxNorm","","2011-05-01 00:00:00","2099-12-31 00:00:00","","" -"ipratropium bromide","","1112921","Ipratropium","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"irinotecan","","1367268","irinotecan","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"iron dextran","","1381661","Iron-Dextran Complex","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"iron dextran 165","","1381661","Iron-Dextran Complex","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"iron dextran 267","","1381661","Iron-Dextran Complex","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"iron sucrose","","1395773","iron sucrose","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"irrigation solution","","","","","","","","","","" -"isavuconazonium","","46221284","isavuconazonium","Drug","RxNorm","","2015-05-04 00:00:00","2099-12-31 00:00:00","","" -"isavuconazonium sulfate","","46221284","isavuconazonium","Drug","RxNorm","","2015-05-04 00:00:00","2099-12-31 00:00:00","","" -"isoetharine hcl","","1181809","Isoetharine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"isoproterenol hcl","","1183554","Isoproterenol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"itraconazole","","1703653","Itraconazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"iu","","8510","unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"iu","","8718","international unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"ixabepilone","","19025348","ixabepilone","Drug","RxNorm","","2007-12-30 00:00:00","2099-12-31 00:00:00","","" -"kanamycin sulfate","","1784749","Kanamycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ketorolac tromethamine","","1136980","Ketorolac","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lacosamide","","19087394","lacosamide","Drug","RxNorm","","2008-11-09 00:00:00","2099-12-31 00:00:00","","" -"lanreotide","","1503501","lanreotide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lanreotide acetate","","1503501","lanreotide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"laronidase","","1543229","Laronidase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lepirudin","","19092139","lepirudin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"leucovorin calcium","","1388796","Leucovorin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"leuprolide acetate","","1351541","Leuprolide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"leuprolide acetate (for depot suspension)","","1351541","Leuprolide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"levalbuterol","","1192218","Levalbuterol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"levamisole hydrochloride","","1389464","Levamisole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"levetiracetam","","711584","Levetiracetam","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"levocarnitine","","1553610","Levocarnitine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"levodopa","","789578","Levodopa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"levofloxacin","","1742253","Levofloxacin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"levoleucovorin calcium","","40168303","levoleucovorin","Drug","RxNorm","","2009-12-06 00:00:00","2099-12-31 00:00:00","","" -"levonorgestrel-releasing intrauterine contraceptive system","","1589505","Levonorgestrel","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"levorphanol tartrate","","1189766","Levorphanol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lidocaine hcl for intravenous infusion","","989878","Lidocaine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lincomycin hcl","","1790692","Lincomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"linezolid","","1736887","linezolid","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"liquid)","","","","","","","","","","" -"lomustine","","1391846","Lomustine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lorazepam","","791967","Lorazepam","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"loxapine","","792263","Loxapine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lymphocyte immune globulin, antithymocyte globulin, equine","","19003476","Horse antihuman thymocyte gamma globulin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lymphocyte immune globulin, antithymocyte globulin, rabbit","","19136207","Lymphocyte Immune Globulin, Anti-Thymocyte Globulin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"magnesium sulfate","","19093848","Magnesium Sulfate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mannitol","","994058","Mannitol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mcg","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1",".001" -"mecasermin","","1502877","mecasermin","Drug","RxNorm","","2006-02-26 00:00:00","2099-12-31 00:00:00","","" -"mechlorethamine hydrochloride","","1394337","Mechlorethamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"medroxyprogesterone acetate","","1500211","Medroxyprogesterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"medroxyprogesterone acetate for contraceptive use","","1500211","Medroxyprogesterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"megestrol acetate","","1300978","Megestrol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"melphalan","","1301267","Melphalan","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"melphalan hydrochloride","","1301267","Melphalan","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"menotropins","","19125388","Menotropins","Drug","RxNorm","D","1970-01-01 00:00:00","2016-05-01 00:00:00","","" -"meperidine hydrochloride","","1102527","Meperidine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mepivacaine hydrochloride","","702774","Mepivacaine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"meq","","9551","milliequivalent","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"mercaptopurine","","1436650","mercaptopurine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"meropenem","","1709170","meropenem","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mesna","","1354698","Mesna","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"metaproterenol sulfate","","1123995","metaproterenol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"metaraminol bitartrate","","19003303","Metaraminol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methacholine chloride","","19024227","Methacholine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methadone","","1103640","Methadone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methadone hcl","","1103640","Methadone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methocarbamol","","704943","Methocarbamol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methotrexate","","1305058","Methotrexate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methotrexate sodium","","1305058","Methotrexate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methyl aminolevulinate (mal)","","924120","Aminolevulinate","Drug","RxNorm","","2007-04-29 00:00:00","2099-12-31 00:00:00","","" -"methyldopate hcl","","1305496","Methyldopate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methylene blue","","905518","Methylene blue","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methylergonovine maleate","","1305637","Methylergonovine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methylnaltrexone","","909841","methylnaltrexone","Drug","RxNorm","","2008-06-29 00:00:00","2099-12-31 00:00:00","","" -"methylprednisolone","","1506270","Methylprednisolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methylprednisolone acetate","","1506270","Methylprednisolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methylprednisolone sodium succinate","","1506270","Methylprednisolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"metoclopramide hcl","","906780","Metoclopramide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"metronidazole","","1707164","Metronidazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mg","milligram","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"micafungin sodium","","19018013","micafungin","Drug","RxNorm","","2005-11-13 00:00:00","2099-12-31 00:00:00","","" -"microgram","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1",".001" -"micrograms","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1",".001" -"midazolam hydrochloride","","708298","Midazolam","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mifepristone","","1508439","Mifepristone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"milligram","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"milligrams","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"million units","","8510","unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1000000" -"million units","","8718","international unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1000000" -"milrinone lactate","","1368671","Milrinone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"minocycline hydrochloride","","1708880","Minocycline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"minoxidil","","1309068","Minoxidil","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"misoprostol","","1150871","Misoprostol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mitomycin","","1389036","Mitomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mitoxantrone hydrochloride","","1309188","Mitoxantrone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ml","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1000" -"ml","","8587","milliliter","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"mometasone furoate ","","905233","Mometasone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"morphine sulfate","","1110410","Morphine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"morphine sulfate (preservative-free sterile solution)","","1110410","Morphine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"moxifloxacin","","1716903","moxifloxacin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"multiple vitamins","","","","","","","","","","" -"muromonab-cd3","","19051865","Muromonab-CD3","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mycophenolate mofetil","","19003999","mycophenolate mofetil","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mycophenolic acid","","19012565","Mycophenolic Acid","Drug","RxNorm","","2005-07-24 00:00:00","2099-12-31 00:00:00","","" -"nabilone","","913440","nabilone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nafcillin sodium","","1713930","Nafcillin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nalbuphine hydrochloride","","1114122","Nalbuphine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"naloxone hydrochloride","","1114220","Naloxone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"naltrexone","","1714319","Naltrexone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nandrolone decanoate","","1514412","Nandrolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nasal vaccine inhalation","","","","","","","","","","" -"natalizumab","","735843","natalizumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nelarabine","","19002912","nelarabine","Drug","RxNorm","","2006-02-26 00:00:00","2099-12-31 00:00:00","","" -"neostigmine methylsulfate","","717136","Neostigmine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"neoxflo or clarixflo","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nesiritide","","1338985","Nesiritide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"netupitant","","45774966","netupitant","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"netupitant","","45774966","netupitant","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"nicotine","","718583","Nicotine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nivolumab","","45892628","nivolumab","Drug","RxNorm","","2015-03-02 00:00:00","2099-12-31 00:00:00","","" -"noc drugs","","","","","","","","","","" -"non-radioactive","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"normal saline solution","","967823","Sodium Chloride","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"obinutuzumab","","44507676","obinutuzumab","Drug","RxNorm","","2013-12-02 00:00:00","2099-12-31 00:00:00","","" -"ocriplasmin","","42904298","ocriplasmin","Drug","RxNorm","","2012-12-03 00:00:00","2099-12-31 00:00:00","","" -"octafluoropropane microspheres","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"octreotide","","1522957","Octreotide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ofatumumab","","40167582","ofatumumab","Drug","RxNorm","","2009-11-01 00:00:00","2099-12-31 00:00:00","","" -"ofloxacin","","923081","Ofloxacin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"olanzapine","","785788","olanzapine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"omacetaxine mepesuccinate","","19069046","omacetaxine mepesuccinate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"omalizumab","","1110942","omalizumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"onabotulinumtoxina","","40165651","onabotulinumtoxinA","Drug","RxNorm","","2009-09-06 00:00:00","2099-12-31 00:00:00","","" -"ondansetron","","1000560","Ondansetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ondansetron 1 mg","","1000560","Ondansetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ondansetron hydrochloride","","1000560","Ondansetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ondansetron hydrochloride 8 mg","","1000560","Ondansetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ondansetron hydrochloride 8 mg","","1000560","Ondansetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","" -"oprelvekin","","1318030","Oprelvekin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oritavancin","","45776147","oritavancin","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"orphenadrine citrate","","724394","Orphenadrine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oseltamivir phosphate","","1799139","Oseltamivir","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oxacillin sodium","","1724703","Oxacillin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oxaliplatin","","1318011","oxaliplatin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oxygen contents","","","","","","","","","","" -"oxymorphone hcl","","1125765","Oxymorphone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oxytetracycline hcl","","925952","Oxytetracycline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oxytocin","","1326115","Oxytocin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"paclitaxel","","1378382","Paclitaxel","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"paclitaxel protein-bound particles","","1378382","Paclitaxel","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"palifermin","","19038562","Palifermin","Drug","RxNorm","","2005-12-04 00:00:00","2099-12-31 00:00:00","","" -"paliperidone palmitate","","703244","paliperidone","Drug","RxNorm","","2007-01-28 00:00:00","2099-12-31 00:00:00","","" -"paliperidone palmitate extended release","","703244","paliperidone","Drug","RxNorm","","2007-01-28 00:00:00","2099-12-31 00:00:00","","" -"palivizumab-rsv-igm","","537647","palivizumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"palonosetron","","911354","palonosetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"palonosetron hcl","","911354","palonosetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pamidronate disodium","","1511646","pamidronate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"panitumumab","","19100985","panitumumab","Drug","RxNorm","","2007-01-28 00:00:00","2099-12-31 00:00:00","","" -"pantoprazole sodium","","948078","pantoprazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"papaverine hcl","","1326901","Papaverine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"paricalcitol","","1517740","paricalcitol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pasireotide long acting","","43012417","pasireotide","Drug","RxNorm","","2013-01-07 00:00:00","2099-12-31 00:00:00","","" -"pegademase bovine","","581480","pegademase bovine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pegaptanib sodium","","19063605","pegaptanib","Drug","RxNorm","","2005-11-13 00:00:00","2099-12-31 00:00:00","","" -"pegaspargase","","1326481","pegaspargase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pegfilgrastim","","1325608","pegfilgrastim","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"peginesatide","","42709327","peginesatide","Drug","RxNorm","","2012-05-07 00:00:00","2099-12-31 00:00:00","","" -"pegloticase","","40226208","Pegloticase","Drug","RxNorm","","2010-10-03 00:00:00","2099-12-31 00:00:00","","" -"pegylated interferon alfa-2a","","1714165","peginterferon alfa-2a","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pegylated interferon alfa-2b","","1797155","peginterferon alfa-2b","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pembrolizumab","","45775965","pembrolizumab","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"pemetrexed","","1304919","pemetrexed","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"penicillin g benzathine","","1728416","Penicillin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"penicillin g benzathine and penicillin g procaine","","1728416","Penicillin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"penicillin g potassium","","1728416","Penicillin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"penicillin g procaine","","1728416","Penicillin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pentamidine isethionate","","1730370","Pentamidine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pentastarch","","40161354","Pentastarch","Drug","RxNorm","","2009-07-05 00:00:00","2099-12-31 00:00:00","","" -"pentazocine","","1130585","Pentazocine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pentobarbital sodium","","730729","Pentobarbital","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pentostatin","","19031224","Pentostatin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"peramivir","","40167569","peramivir","Drug","RxNorm","","2009-11-01 00:00:00","2099-12-31 00:00:00","","" -"perflexane lipid microspheres","","45775689","perflexane","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"perflutren lipid microspheres","","19071160","Perflutren","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"perphenazine","","733008","Perphenazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pertuzumab","","42801287","pertuzumab","Drug","RxNorm","","2012-07-02 00:00:00","2099-12-31 00:00:00","","" -"phenobarbital sodium","","734275","Phenobarbital","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"phentolamine mesylate","","1335539","Phentolamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"phenylephrine hcl","","1135766","Phenylephrine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"phenytoin sodium","","740910","Phenytoin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"phytonadione (vitamin k)","","19044727","Vitamin K 1","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"piperacillin sodium","","1746114","Piperacillin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"plasma protein fraction (human)","","19025693","plasma protein fraction","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"platelet rich plasma","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"plerixafor","","19017581","Plerixafor","Drug","RxNorm","","2009-01-04 00:00:00","2099-12-31 00:00:00","","" -"plicamycin","","19009165","Plicamycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pneumococcal conjugate vaccine","","513909","heptavalent pneumococcal conjugate vaccine","Drug","RxNorm","D","2005-09-11 00:00:00","2016-05-01 00:00:00","","" -"pneumococcal vaccine","","513909","heptavalent pneumococcal conjugate vaccine","Drug","RxNorm","D","2005-09-11 00:00:00","2016-05-01 00:00:00","","" -"porfimer sodium","","19090420","Porfimer Sodium","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"potassium chloride","","19049105","Potassium Chloride","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pralatrexate","","40166461","Pralatrexate","Drug","RxNorm","","2009-10-04 00:00:00","2099-12-31 00:00:00","","" -"pralidoxime chloride","","1727468","pralidoxime","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prednisolone","","1550557","prednisolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prednisolone acetate","","1550557","prednisolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prednisone","","1551099","Prednisone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prescription drug","","","","","","","","","","" -"procainamide hcl","","1351461","Procainamide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"procarbazine hydrochloride","","1351779","Procarbazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prochlorperazine","","752061","Prochlorperazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prochlorperazine maleate","","752061","Prochlorperazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"progesterone","","1552310","Progesterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"promazine hcl","","19052903","Promazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"promethazine hcl","","1153013","Promethazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"promethazine hydrochloride","","1153013","Promethazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"propofol","","753626","Propofol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"propranolol hcl","","1353766","Propranolol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"protamine sulfate","","19054242","Protamine Sulfate (USP)","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"protein c concentrate","","42801108","Protein C","Drug","RxNorm","","2012-07-02 00:00:00","2099-12-31 00:00:00","","" -"prothrombin complex concentrate (human), kcentra","","44507865","Prothrombin","Drug","RxNorm","","2013-12-02 00:00:00","2099-12-31 00:00:00","","" -"protirelin","","19001701","Thyrotropin-Releasing Hormone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pyridoxine hcl","","42903728","PYRIDOXINE DIPALMITATE","Drug","RxNorm","","2012-12-03 00:00:00","2099-12-31 00:00:00","","" -"quinupristin","","1789515","quinupristin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"radiesse","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ramucirumab","","44818489","ramucirumab","Drug","RxNorm","","2014-06-02 00:00:00","2099-12-31 00:00:00","","" -"ranibizumab","","19080982","ranibizumab","Drug","RxNorm","","2006-08-27 00:00:00","2099-12-31 00:00:00","","" -"ranitidine hydrochloride","","961047","Ranitidine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"rasburicase","","1304565","Rasburicase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"regadenoson","","19090761","regadenoson","Drug","RxNorm","","2008-06-01 00:00:00","2099-12-31 00:00:00","","" -"respiratory syncytial virus immune globulin","","19013765","respiratory syncytial virus immune globulin intravenous","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"reteplase","","19024191","Reteplase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"rho d immune globulin","","535714","Rho(D) Immune Globulin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"rho(d) immune globulin (human)","","535714","Rho(D) Immune Globulin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"rilonacept","","19023450","rilonacept","Drug","RxNorm","","2008-03-30 00:00:00","2099-12-31 00:00:00","","" -"rimabotulinumtoxinb","","40166020","rimabotulinumtoxinB","Drug","RxNorm","","2009-09-06 00:00:00","2099-12-31 00:00:00","","" -"rimantadine hydrochloride","","1763339","Rimantadine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"risperidone","","735979","Risperidone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"rituximab","","1314273","rituximab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"romidepsin","","40168385","romidepsin","Drug","RxNorm","","2009-12-06 00:00:00","2099-12-31 00:00:00","","" -"romiplostim","","19032407","romiplostim","Drug","RxNorm","","2008-09-28 00:00:00","2099-12-31 00:00:00","","" -"ropivacaine hydrochloride","","1136487","ropivacaine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"saquinavir","","1746244","Saquinavir","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sargramostim (gm-csf)","","1308432","sargramostim","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sculptra","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"secretin","","19066188","Secretin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sermorelin acetate","","19077457","Sermorelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sildenafil citrate","","1316262","sildenafil","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"siltuximab","","44818461","siltuximab","Drug","RxNorm","","2014-06-02 00:00:00","2099-12-31 00:00:00","","" -"sincalide","","19067803","Sincalide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"single vitamin/mineral/trace element","","","","","","","","","","" -"sipuleucel-t","","40224095","sipuleucel-T","Drug","RxNorm","","2010-08-01 00:00:00","2099-12-31 00:00:00","","" -"sirolimus","","19034726","Sirolimus","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sodium bicarbonate","","939506","Sodium Bicarbonate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sodium chloride","","967823","Sodium Chloride","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sodium ferric gluconate complex in sucrose injection","","1399177","Sodium ferric gluconate complex","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sodium hyaluronate","","787787","hyaluronate","Drug","RxNorm","","2006-04-02 00:00:00","2099-12-31 00:00:00","","" -"sodium lactate","","19011035","Lactate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sodium phosphate","","939871","sodium phosphate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"somatrem","","1578181","somatrem","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"somatropin","","1584910","Somatropin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"spectinomycin dihydrochloride","","1701651","Spectinomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"state supplied vaccine","","","","","","","","","","" -"sterile cefuroxime sodium","","1778162","Cefuroxime","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sterile dilutant","","","","","","","","","","" -"sterile saline or water","","","","","","","","","","" -"sterile water","","","","","","","","","","" -"sterile water/saline","","","","","","","","","","" -"streptokinase","","19136187","Streptokinase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"streptomycin","","1836191","Streptomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"streptozocin","","19136210","Streptozocin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"succinylcholine chloride","","836208","Succinylcholine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sulbactam","","1836241","Sulbactam","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sulfamethoxazole","","1836430","Sulfamethoxazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sulfur hexafluoride lipid microsphere","","45892833","Sulfur Hexafluoride","Drug","RxNorm","","2015-03-02 00:00:00","2099-12-31 00:00:00","","" -"sulfur hexafluoride lipid microspheres","","45892833","Sulfur Hexafluoride","Drug","RxNorm","","2015-03-02 00:00:00","2099-12-31 00:00:00","1","" -"sumatriptan succinate","","1140643","Sumatriptan","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"syringe","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"syringe with needle","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tacrine hydrochloride","","836654","Tacrine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tacrolimus","","950637","Tacrolimus","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"taliglucerace alfa","","42800246","taliglucerase alfa","Drug","RxNorm","","2012-06-04 00:00:00","2099-12-31 00:00:00","","" -"taliglucerase alfa","","42800246","taliglucerase alfa","Drug","RxNorm","","2012-06-04 00:00:00","2099-12-31 00:00:00","","" -"tamoxifen citrate","","1436678","Tamoxifen","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tazobactam","","1741122","tazobactam","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tbo-filgrastim","","1304850","Filgrastim","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tedizolid phosphate","","45775686","tedizolid","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"telavancin","","40166675","telavancin","Drug","RxNorm","","2009-10-04 00:00:00","2099-12-31 00:00:00","","" -"temozolomide","","1341149","temozolomide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"temsirolimus","","19092845","temsirolimus","Drug","RxNorm","","2007-07-29 00:00:00","2099-12-31 00:00:00","","" -"tenecteplase","","19098548","Tenecteplase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"teniposide","","19136750","Teniposide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"terbutaline sulfate","","1236744","Terbutaline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"teriparatide","","1521987","Teriparatide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone cypionate","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone enanthate","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone pellet","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone propionate","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone suspension","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone undecanoate","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tetanus immune globulin","","561401","Tetanus immune globulin, human","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tetracaine","","1036884","Tetracaine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tetracycline","","1836948","Tetracycline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"theophylline","","1237049","Theophylline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"thiamine hcl","","19137312","Thiamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"thiethylperazine maleate","","1037358","Thiethylperazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"thiotepa","","19137385","Thiotepa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"thyrotropin alpha","","19007721","Thyrotropin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ticarcillin","","1759842","Clavulanate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tigecycline","","1742432","tigecycline","Drug","RxNorm","","2005-11-13 00:00:00","2099-12-31 00:00:00","","" -"tinzaparin sodium","","1308473","tinzaparin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tirofiban hcl","","19017067","tirofiban","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tissue marker","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tobramycin","","902722","Tobramycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tobramycin sulfate","","902722","Tobramycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tocilizumab","","40171288","tocilizumab","Drug","RxNorm","","2010-01-31 00:00:00","2099-12-31 00:00:00","","" -"tolazoline hcl","","19002829","Tolazoline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"topotecan","","1378509","Topotecan","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"torsemide","","942350","torsemide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tositumomab","","19068894","tositumomab","Drug","RxNorm","","2008-06-29 00:00:00","2099-12-31 00:00:00","","" -"trastuzumab","","1387104","trastuzumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"treprostinil","","1327256","Treprostinil","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tretinoin","","903643","Tretinoin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triamcinolone","","903963","Triamcinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triamcinolone acetonide","","903963","Triamcinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triamcinolone diacetate","","903963","Triamcinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triamcinolone hexacetonide","","903963","Triamcinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triflupromazine hcl","","19005104","Triflupromazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"trimethobenzamide hcl","","942799","trimethobenzamide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"trimethobenzamide hydrochloride","","942799","trimethobenzamide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"trimethoprim","","1705674","Trimethoprim","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"trimetrexate glucuronate","","1750928","Trimetrexate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triptorelin pamoate","","1343039","Triptorelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"unit","","8510","unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"unit","","8718","international unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"units","","8510","unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"units","","8718","international unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"urea","","906914","Urea","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"urofollitropin","","1515417","Urofollitropin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"urokinase","","1307515","Urokinase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ustekinumab","","40161532","ustekinumab","Drug","RxNorm","","2009-07-05 00:00:00","2099-12-31 00:00:00","","" -"vaccine for part d drug","","","","","","","","","","" -"valrubicin","","19012543","valrubicin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vancomycin hcl","","1707687","Vancomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vascular graft material, synthetic","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vedolizumab","","45774639","vedolizumab","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"velaglucerase alfa","","40174604","velaglucerase alfa","Drug","RxNorm","","2010-04-04 00:00:00","2099-12-31 00:00:00","","" -"verteporfin","","912803","Verteporfin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vinblastine sulfate","","19008264","Vinblastine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vincristine sulfate","","1308290","Vincristine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vincristine sulfate liposome","","1308290","Vincristine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vinorelbine tartrate","","1343346","vinorelbine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vitamin b-12 cyanocobalamin","","1308738","Vitamin B 12","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"von willebrand factor complex","","44785885","von Willebrand factor","Drug","RxNorm","","2014-03-03 00:00:00","2099-12-31 00:00:00","","" -"von willebrand factor complex (human)","","44785885","von Willebrand factor","Drug","RxNorm","","2014-03-03 00:00:00","2099-12-31 00:00:00","","" -"von willebrand factor complex (humate-p)","","44785885","von Willebrand factor","Drug","RxNorm","","2014-03-03 00:00:00","2099-12-31 00:00:00","","" -"voriconazole","","1714277","voriconazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"water","","","","","","","","","","" -"zalcitabine (ddc)","","1724827","Zalcitabine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ziconotide","","19005061","ziconotide","Drug","RxNorm","","2005-07-24 00:00:00","2099-12-31 00:00:00","","" -"zidovudine","","1710612","Zidovudine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ziprasidone mesylate","","712615","ziprasidone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ziv-aflibercept","","40244266","aflibercept","Drug","RxNorm","","2011-12-04 00:00:00","2099-12-31 00:00:00","","" -"zoledronic acid","","1524674","zoledronic acid","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"zoledronic acid (reclast)","","1524674","zoledronic acid","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"zoledronic acid (zometa)","","1524674","zoledronic acid","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" diff --git a/vocabulary_data/dev_hcpcs/manual_table_extract.sql b/vocabulary_data/dev_hcpcs/manual_table_extract.sql deleted file mode 100644 index b0e91a9..0000000 --- a/vocabulary_data/dev_hcpcs/manual_table_extract.sql +++ /dev/null @@ -1,64 +0,0 @@ -SET LINESIZE 1024 -SET ECHO OFF -SET HEADING OFF -SET FEEDBACK OFF -SET VERIFY OFF -SET NEWPAGE NONE --- SET COLSEP ';' - -COLUMN exp_file_name new_val exp_file_name -SELECT '&1'|| '/' || '&2' AS exp_file_name FROM dual; -SPOOL &&exp_file_name - -WITH mt AS (SELECT CONCEPT_CODE_1, - CONCEPT_NAME_1, - CONCEPT_ID_2, - CONCEPT_NAME_2, - DOMAIN_ID, - VOCABULARY_ID, - INVALID_REASON, - TO_CHAR(VALID_START_DATE, 'YYYY-MM-DD HH24:MI:SS') AS VALID_START_DATE, - TO_CHAR(VALID_END_DATE, 'YYYY-MM-DD HH24:MI:SS') AS VALID_END_DATE, - PRECEDENCE, - CONVERSION_FACTOR - FROM &3 - ORDER BY CONCEPT_CODE_1, - CONCEPT_NAME_1, - CONCEPT_ID_2, - CONCEPT_NAME_2, - DOMAIN_ID, - VOCABULARY_ID, - INVALID_REASON, - VALID_START_DATE, - VALID_END_DATE, - PRECEDENCE, - CONVERSION_FACTOR) -SELECT 'CONCEPT_CODE_1' || ',' - || 'CONCEPT_NAME_1' || ',' - || 'CONCEPT_ID_2' || ',' - || 'CONCEPT_NAME_2' || ',' - || 'DOMAIN_ID' || ',' - || 'VOCABULARY_ID' || ',' - || 'INVALID_REASON' || ',' - || 'VALID_START_DATE' || ',' - || 'VALID_END_DATE' || ',' - || 'PRECEDENCE' || ',' - || 'CONVERSION_FACTOR' || CHR(13)||CHR(10) AS "&3 DATA" -FROM DUAL -UNION ALL -SELECT '"' || mt.CONCEPT_CODE_1 || '",' - || '"' || mt.CONCEPT_NAME_1 || '",' - || '"' || mt.CONCEPT_ID_2 || '",' - || '"' || mt.CONCEPT_NAME_2 || '",' - || '"' || mt.DOMAIN_ID || '",' - || '"' || mt.VOCABULARY_ID || '",' - || '"' || mt.INVALID_REASON || '",' - || '"' || mt.VALID_START_DATE || '",' - || '"' || mt.VALID_END_DATE || '",' - || '"' || mt.PRECEDENCE || '",' - || '"' || mt.CONVERSION_FACTOR || '"' || CHR(13)||CHR(10) -FROM mt -; - -SPOOL OFF -EXIT \ No newline at end of file diff --git a/vocabulary_data/dev_hcpcs/manual_table_import.ctl b/vocabulary_data/dev_hcpcs/manual_table_import.ctl deleted file mode 100644 index d2d3c26..0000000 --- a/vocabulary_data/dev_hcpcs/manual_table_import.ctl +++ /dev/null @@ -1,21 +0,0 @@ -OPTIONS (errors=0, direct=true, skip=1) -LOAD DATA -INFILE 'manual_table_data.csv' -APPEND -INTO TABLE MANUAL_TABLE -FIELDS TERMINATED BY ',' -OPTIONALLY ENCLOSED BY '"' -TRAILING NULLCOLS ( -"CONCEPT_CODE_1" POSITION(1:255) CHAR, -"CONCEPT_NAME_1" POSITION(256:511) CHAR, -"CONCEPT_ID_2" POSITION(512:550) INTEGER, -"CONCEPT_NAME_2" POSITION(551:806) CHAR, -"DOMAIN_ID" POSITION(807:827) CHAR, -"VOCABULARY_ID" POSITION(828:848) CHAR, -"INVALID_REASON" POSITION(849:850) CHAR, -"VALID_START_DATE" POSITION(*) DATE "YYYY-MM-DD HH24:MI:SS", -"VALID_END_DATE" POSITION(*) DATE "YYYY-MM-DD HH24:MI:SS", -"PRECEDENCE" POSITION(*) INTEGER "TO_NUMBER(:PRECEDENCE, '999,999,999,999')", -"CONVERSION_FACTOR" POSITION(*) FLOAT "TO_NUMBER(:CONVERSION_FACTOR, '999,999,999.9999')" -) - diff --git a/vocabulary_data/dev_hcpcs/manual_work_result/manual_table_data.csv b/vocabulary_data/dev_hcpcs/manual_work_result/manual_table_data.csv deleted file mode 100644 index 08a94e1..0000000 --- a/vocabulary_data/dev_hcpcs/manual_work_result/manual_table_data.csv +++ /dev/null @@ -1,1059 +0,0 @@ -CONCEPT_CODE_1,CONCEPT_NAME_1,CONCEPT_ID_2,CONCEPT_NAME_2,DOMAIN_ID,VOCABULARY_ID,INVALID_REASON,VALID_START_DATE,VALID_END_DATE,PRECEDENCE,CONVERSION_FACTOR -"%","%","8554","percent","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"%","percent","8554","percent","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"(e.g. liquid)","","","","","","","","","","" -"5% dextrose/water (500 ml = 1 unit)","","1560524","Glucose","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"Implant","","19082103","Injectable 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disodium","","19052936","edetate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"efalizumab","","936429","efalizumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"elosulfase alfa","","44814525","ELOSULFASE ALFA","Drug","RxNorm","","2014-04-07 00:00:00","2099-12-31 00:00:00","","" -"enfuvirtide","","1717002","enfuvirtide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"enoxaparin sodium","","1301025","Enoxaparin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"epifix","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"epirubicin hcl","","1344354","Epirubicin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"epoetin alfa","","1301125","Epoetin Alfa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"epoetin beta","","19001311","epoetin beta","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"epoprostenol","","1354118","Epoprostenol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"eptifibatide","","1322199","eptifibatide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ergonovine maleate","","1345205","Ergonovine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"eribulin mesylate","","40230712","eribulin","Drug","RxNorm","","2010-12-05 00:00:00","2099-12-31 00:00:00","","" -"ertapenem sodium","","1717963","ertapenem","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"erythromycin lactobionate","","1746940","Erythromycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"estradiol valerate","","1548195","Estradiol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"estrogen conjugated","","1549080","Estrogens, Conjugated (USP)","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"estrogen conjugated","","1549080","Estrogens, Conjugated (USP)","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","" -"estrone","","1549254","Estrone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"etanercept","","1151789","Etanercept","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ethanolamine oleate","","19095285","ethanolamine oleate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"etidronate disodium","","1552929","Etidronate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"etoposide","","1350504","Etoposide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"everolimus","","19011440","everolimus","Drug","RxNorm","","2009-05-03 00:00:00","2099-12-31 00:00:00","","" -"excellagen","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"exemestane","","1398399","exemestane","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix (antihemophilic factor","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix (antihemophilic factor, purified, non-recombinant)","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix (antihemophilic factor, recombinant), alprolix","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix (antihemophilic factor, recombinant), rixubis","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor ix, complex","","1351935","factor IX","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viia (antihemophilic factor","","1352141","Factor VIIa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii (antihemophilic factor","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii (antihemophilic factor (porcine))","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii (antihemophilic factor, human)","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii (antihemophilic factor, recombinant)","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor viii fc fusion (recombinant)","","45776421","efmoroctocog alfa","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"factor xiii (antihemophilic factor","","1352213","Factor VIII","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"factor xiii a-subunit","","45776421","efmoroctocog alfa","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"famotidine","","953076","Famotidine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fentanyl citrate","","1154029","Fentanyl","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ferric carboxymaltose","","43560392","ferric carboxymaltose","Drug","RxNorm","","2013-09-03 00:00:00","2099-12-31 00:00:00","","" -"ferric pyrophosphate citrate solution","","46221255","ferric pyrophosphate","Drug","RxNorm","","2015-05-04 00:00:00","2099-12-31 00:00:00","","" -"ferumoxytol","","40163731","ferumoxytol","Drug","RxNorm","","2009-08-02 00:00:00","2099-12-31 00:00:00","","" -"filgrastim (g-csf)","","1304850","Filgrastim","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"finasteride","","996416","Finasteride","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"floxuridine","","1355509","Floxuridine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fluconazole","","1754994","Fluconazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fludarabine phosphate","","1395557","fludarabine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"flunisolide","","1196514","flunisolide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fluocinolone acetonide","","996541","fluocinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fluocinolone acetonide intravitreal implant","","996541","fluocinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fluorouracil","","955632","Fluorouracil","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fluphenazine decanoate","","756018","Fluphenazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"flutamide","","1356461","Flutamide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"follitropin alfa","","1542948","Follitropin Alfa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"follitropin beta","","1597235","follitropin beta","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fomepizole","","19022479","fomepizole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fomivirsen sodium","","19048999","fomivirsen","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fondaparinux sodium","","1315865","fondaparinux","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"formoterol","","1196677","formoterol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"formoterol fumarate","","1196677","formoterol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fosaprepitant","","19022131","Fosaprepitant dimeglumine","Drug","RxNorm","","2008-03-02 00:00:00","2099-12-31 00:00:00","","" -"foscarnet sodium","","1724700","Foscarnet","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fosphenytoin","","713192","fosphenytoin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fosphenytoin sodium","","713192","fosphenytoin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"fulvestrant","","1304044","fulvestrant","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"furosemide","","956874","Furosemide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadobenate dimeglumine (multihance multipack)","","19097468","Gadopentetate Dimeglumine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadobenate dimeglumine (multihance)","","19097468","Gadopentetate Dimeglumine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadobutrol","","19048493","gadobutrol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadofosveset trisodium","","43012718","gadofosveset","Drug","RxNorm","","2013-02-04 00:00:00","2099-12-31 00:00:00","","" -"gadoterate meglumine","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadoteridol","","19097463","gadoteridol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gadoxetate disodium","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gallium nitrate","","42899259","Gallium","Drug","RxNorm","","2012-10-01 00:00:00","2099-12-31 00:00:00","","" -"galsulfase","","19078649","galsulfase","Drug","RxNorm","","2005-11-13 00:00:00","2099-12-31 00:00:00","","" -"gamma globulin","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ganciclovir","","1757803","Ganciclovir","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ganciclovir sodium","","1757803","Ganciclovir","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ganirelix acetate","","1536743","ganirelix","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"garamycin","","919345","Gentamicin Sulfate (USP)","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gatifloxacin","","1789276","gatifloxacin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gefitinib","","1319193","gefitinib","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gemcitabine hydrochloride","","1314924","gemcitabine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gemtuzumab ozogamicin","","19098566","gemtuzumab","Drug","RxNorm","D","1970-01-01 00:00:00","2016-05-01 00:00:00","","" -"glatiramer acetate","","751889","Glatiramer","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"glucagon hydrochloride","","1560278","Glucagon","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"glucarpidase","","42709319","glucarpidase","Drug","RxNorm","","2012-05-07 00:00:00","2099-12-31 00:00:00","","" -"glycopyrrolate","","963353","Glycopyrrolate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gm","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1000" -"gm","","8587","milliliter","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"gold sodium thiomalate","","1152134","Aurothiomalate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"golimumab","","19041065","golimumab","Drug","RxNorm","","2009-05-31 00:00:00","2099-12-31 00:00:00","","" -"gonadorelin hydrochloride","","19089810","Gonadorelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"goserelin acetate","","1366310","Goserelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"graftjacket xpress","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"gram","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1000" -"gram","","8587","milliliter","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"grams","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1000" -"grams","","8587","milliliter","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"granisetron hydrochloride","","1000772","Granisetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"haloperidol","","766529","Haloperidol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"haloperidol decanoate","","766529","Haloperidol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hemin","","19067303","Hemin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"heparin sodium","","1367571","heparin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hepatitis b immune globulin (hepagam b)","","501343","hepatitis B immune globulin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hepatitis b vaccine","","528323","Hepatitis B Surface Antigen Vaccine","Drug","RxNorm","","2008-06-29 00:00:00","2099-12-31 00:00:00","","" -"hexaminolevulinate hydrochloride","","43532423","hexyl 5-aminolevulinate","Drug","RxNorm","","2013-07-01 00:00:00","2099-12-31 00:00:00","","" -"high risk population (use only with codes for immunization)","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"histrelin","","1366773","histrelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"histrelin acetate","","1366773","histrelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"home infusion therapy","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"human fibrinogen concentrate","","19044986","fibrinogen concentrate (human)","Drug","RxNorm","","2009-02-01 00:00:00","2099-12-31 00:00:00","","" -"human plasma fibrin sealant","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hyaluronan or derivative","","787787","hyaluronate","Drug","RxNorm","","2006-04-02 00:00:00","2099-12-31 00:00:00","","" -"hyaluronidase","","19073699","Hyaluronidase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydralazine hcl","","1373928","Hydralazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydrocortisone acetate","","975125","Hydrocortisone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydrocortisone sodium phosphate","","975125","Hydrocortisone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydrocortisone sodium phosphate","","975125","Hydrocortisone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","" -"hydrocortisone sodium succinate","","975125","Hydrocortisone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydromorphone","","1126658","Hydromorphone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydromorphone hydrochloride","","1126658","Hydromorphone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydroxyprogesterone caproate","","19077143","17-alpha-Hydroxyprogesterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydroxyurea","","1377141","hydroxyurea","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydroxyzine hcl","","777221","Hydroxyzine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hydroxyzine pamoate","","777221","Hydroxyzine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hyoscyamine sulfate","","923672","Hyoscyamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"hypertonic saline solution","","967823","Sodium Chloride","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"i.u.","","8510","unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"i.u.","","8718","international unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"ibandronate sodium","","1512480","Ibandronate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ibuprofen","","1177480","Ibuprofen","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ibutilide fumarate","","19050087","ibutilide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"icatibant","","40242044","icatibant","Drug","RxNorm","","2011-09-04 00:00:00","2099-12-31 00:00:00","","" -"idarubicin hydrochloride","","19078097","Idarubicin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"idursulfase","","19091430","idursulfase","Drug","RxNorm","","2006-08-27 00:00:00","2099-12-31 00:00:00","","" -"ifosfamide","","19078187","Ifosfamide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"iloprost","","1344992","Iloprost","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"imatinib","","1304107","imatinib","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"imiglucerase","","1348407","imiglucerase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin (bivigam)","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin (gammaplex)","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin (hizentra)","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin (privigen)","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immune globulin (vivaglobin)","","19117912","Immunoglobulin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"immunizations/vaccinations","","","","","","","","","","" -"incobotulinumtoxin a","","40224763","incobotulinumtoxinA","Drug","RxNorm","","2010-09-05 00:00:00","2099-12-31 00:00:00","","" -"infliximab","","937368","infliximab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"influenza vaccine, recombinant hemagglutinin antigens, for intramuscular use (flublok)","","","","","","","","","","" -"influenza virus vaccine","","","","","","","","","","" -"influenza virus vaccine, split virus, for intramuscular use (agriflu)","","","","","","","","","","" -"injectable anesthetic","","","","","","","","","","" -"injectable bulking agent","","","","","","","","","","" -"injectable poly-l-lactic acid","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"insulin","","","","","","","","","","" -"insulin intermediate acting (nph or lente)","","","","","","","","","","" -"insulin long acting","","","","","","","","","","" -"insulin most rapid onset (lispro or aspart)","","","","","","","","","","" -"insulin per 5 units","","","","","","","","","","" -"insulin rapid onset","","","","","","","","","","" -"interferon alfa-2a","","1379969","Interferon Alfa-2a","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"interferon alfa-2b","","1380068","Interferon Alfa-2b","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"interferon alfa-n3","","1385645","Interferon Alfa-n3","Drug","RxNorm","","2006-04-02 00:00:00","2099-12-31 00:00:00","","" -"interferon alfacon-1","","1781314","interferon alfacon-1","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"interferon beta-1a","","722424","Interferon 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267","","1381661","Iron-Dextran Complex","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"iron sucrose","","1395773","iron sucrose","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"irrigation solution","","","","","","","","","","" -"isavuconazonium","","46221284","isavuconazonium","Drug","RxNorm","","2015-05-04 00:00:00","2099-12-31 00:00:00","","" -"isavuconazonium sulfate","","46221284","isavuconazonium","Drug","RxNorm","","2015-05-04 00:00:00","2099-12-31 00:00:00","","" -"isoetharine hcl","","1181809","Isoetharine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"isoproterenol hcl","","1183554","Isoproterenol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"itraconazole","","1703653","Itraconazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"iu","","8510","unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"iu","","8718","international unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"ixabepilone","","19025348","ixabepilone","Drug","RxNorm","","2007-12-30 00:00:00","2099-12-31 00:00:00","","" -"kanamycin sulfate","","1784749","Kanamycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ketorolac tromethamine","","1136980","Ketorolac","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lacosamide","","19087394","lacosamide","Drug","RxNorm","","2008-11-09 00:00:00","2099-12-31 00:00:00","","" -"lanreotide","","1503501","lanreotide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lanreotide acetate","","1503501","lanreotide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"laronidase","","1543229","Laronidase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lepirudin","","19092139","lepirudin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"leucovorin 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00:00:00","2099-12-31 00:00:00","","" -"lorazepam","","791967","Lorazepam","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"loxapine","","792263","Loxapine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lymphocyte immune globulin, antithymocyte globulin, equine","","19003476","Horse antihuman thymocyte gamma globulin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"lymphocyte immune globulin, antithymocyte globulin, rabbit","","19136207","Lymphocyte Immune Globulin, Anti-Thymocyte Globulin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"magnesium sulfate","","19093848","Magnesium Sulfate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mannitol","","994058","Mannitol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mcg","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1",".001" 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-"meperidine hydrochloride","","1102527","Meperidine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mepivacaine hydrochloride","","702774","Mepivacaine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"meq","","9551","milliequivalent","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"mercaptopurine","","1436650","mercaptopurine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"meropenem","","1709170","meropenem","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mesna","","1354698","Mesna","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"metaproterenol sulfate","","1123995","metaproterenol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"metaraminol bitartrate","","19003303","Metaraminol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methacholine 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00:00:00","2099-12-31 00:00:00","","" -"methylergonovine maleate","","1305637","Methylergonovine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methylnaltrexone","","909841","methylnaltrexone","Drug","RxNorm","","2008-06-29 00:00:00","2099-12-31 00:00:00","","" -"methylprednisolone","","1506270","Methylprednisolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methylprednisolone acetate","","1506270","Methylprednisolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"methylprednisolone sodium succinate","","1506270","Methylprednisolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"metoclopramide hcl","","906780","Metoclopramide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"metronidazole","","1707164","Metronidazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mg","milligram","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"micafungin sodium","","19018013","micafungin","Drug","RxNorm","","2005-11-13 00:00:00","2099-12-31 00:00:00","","" -"microgram","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1",".001" -"micrograms","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1",".001" -"midazolam hydrochloride","","708298","Midazolam","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mifepristone","","1508439","Mifepristone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"milligram","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"milligrams","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"million units","","8510","unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1000000" -"million units","","8718","international unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1000000" -"milrinone lactate","","1368671","Milrinone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"minocycline hydrochloride","","1708880","Minocycline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"minoxidil","","1309068","Minoxidil","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"misoprostol","","1150871","Misoprostol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mitomycin","","1389036","Mitomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mitoxantrone hydrochloride","","1309188","Mitoxantrone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ml","","8576","milligram","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1000" -"ml","","8587","milliliter","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"mometasone furoate ","","905233","Mometasone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"morphine sulfate","","1110410","Morphine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"morphine sulfate (preservative-free sterile solution)","","1110410","Morphine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"moxifloxacin","","1716903","moxifloxacin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"multiple vitamins","","","","","","","","","","" -"muromonab-cd3","","19051865","Muromonab-CD3","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mycophenolate mofetil","","19003999","mycophenolate mofetil","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"mycophenolic acid","","19012565","Mycophenolic Acid","Drug","RxNorm","","2005-07-24 00:00:00","2099-12-31 00:00:00","","" -"nabilone","","913440","nabilone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nafcillin sodium","","1713930","Nafcillin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nalbuphine hydrochloride","","1114122","Nalbuphine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"naloxone hydrochloride","","1114220","Naloxone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"naltrexone","","1714319","Naltrexone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nandrolone decanoate","","1514412","Nandrolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nasal vaccine inhalation","","","","","","","","","","" -"natalizumab","","735843","natalizumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nelarabine","","19002912","nelarabine","Drug","RxNorm","","2006-02-26 00:00:00","2099-12-31 00:00:00","","" -"neostigmine methylsulfate","","717136","Neostigmine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"neoxflo or clarixflo","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nesiritide","","1338985","Nesiritide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"netupitant","","45774966","netupitant","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"netupitant","","45774966","netupitant","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"nicotine","","718583","Nicotine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"nivolumab","","45892628","nivolumab","Drug","RxNorm","","2015-03-02 00:00:00","2099-12-31 00:00:00","","" -"noc drugs","","","","","","","","","","" -"non-radioactive","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"normal saline solution","","967823","Sodium Chloride","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"obinutuzumab","","44507676","obinutuzumab","Drug","RxNorm","","2013-12-02 00:00:00","2099-12-31 00:00:00","","" -"ocriplasmin","","42904298","ocriplasmin","Drug","RxNorm","","2012-12-03 00:00:00","2099-12-31 00:00:00","","" -"octafluoropropane microspheres","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"octreotide","","1522957","Octreotide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ofatumumab","","40167582","ofatumumab","Drug","RxNorm","","2009-11-01 00:00:00","2099-12-31 00:00:00","","" -"ofloxacin","","923081","Ofloxacin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"olanzapine","","785788","olanzapine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"omacetaxine mepesuccinate","","19069046","omacetaxine mepesuccinate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"omalizumab","","1110942","omalizumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"onabotulinumtoxina","","40165651","onabotulinumtoxinA","Drug","RxNorm","","2009-09-06 00:00:00","2099-12-31 00:00:00","","" -"ondansetron","","1000560","Ondansetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ondansetron 1 mg","","1000560","Ondansetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ondansetron hydrochloride","","1000560","Ondansetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ondansetron hydrochloride 8 mg","","1000560","Ondansetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ondansetron hydrochloride 8 mg","","1000560","Ondansetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","" -"oprelvekin","","1318030","Oprelvekin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oritavancin","","45776147","oritavancin","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"orphenadrine citrate","","724394","Orphenadrine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oseltamivir phosphate","","1799139","Oseltamivir","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oxacillin sodium","","1724703","Oxacillin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oxaliplatin","","1318011","oxaliplatin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oxygen contents","","","","","","","","","","" -"oxymorphone hcl","","1125765","Oxymorphone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oxytetracycline hcl","","925952","Oxytetracycline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"oxytocin","","1326115","Oxytocin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"paclitaxel","","1378382","Paclitaxel","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"paclitaxel protein-bound particles","","1378382","Paclitaxel","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"palifermin","","19038562","Palifermin","Drug","RxNorm","","2005-12-04 00:00:00","2099-12-31 00:00:00","","" -"paliperidone palmitate","","703244","paliperidone","Drug","RxNorm","","2007-01-28 00:00:00","2099-12-31 00:00:00","","" -"paliperidone palmitate extended release","","703244","paliperidone","Drug","RxNorm","","2007-01-28 00:00:00","2099-12-31 00:00:00","","" -"palivizumab-rsv-igm","","537647","palivizumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"palonosetron","","911354","palonosetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"palonosetron hcl","","911354","palonosetron","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pamidronate disodium","","1511646","pamidronate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"panitumumab","","19100985","panitumumab","Drug","RxNorm","","2007-01-28 00:00:00","2099-12-31 00:00:00","","" -"pantoprazole sodium","","948078","pantoprazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"papaverine hcl","","1326901","Papaverine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"paricalcitol","","1517740","paricalcitol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pasireotide long acting","","43012417","pasireotide","Drug","RxNorm","","2013-01-07 00:00:00","2099-12-31 00:00:00","","" -"pegademase bovine","","581480","pegademase bovine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pegaptanib sodium","","19063605","pegaptanib","Drug","RxNorm","","2005-11-13 00:00:00","2099-12-31 00:00:00","","" -"pegaspargase","","1326481","pegaspargase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pegfilgrastim","","1325608","pegfilgrastim","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"peginesatide","","42709327","peginesatide","Drug","RxNorm","","2012-05-07 00:00:00","2099-12-31 00:00:00","","" -"pegloticase","","40226208","Pegloticase","Drug","RxNorm","","2010-10-03 00:00:00","2099-12-31 00:00:00","","" -"pegylated interferon alfa-2a","","1714165","peginterferon alfa-2a","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pegylated interferon alfa-2b","","1797155","peginterferon alfa-2b","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pembrolizumab","","45775965","pembrolizumab","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"pemetrexed","","1304919","pemetrexed","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"penicillin g benzathine","","1728416","Penicillin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"penicillin g benzathine and penicillin g procaine","","1728416","Penicillin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"penicillin g potassium","","1728416","Penicillin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"penicillin g procaine","","1728416","Penicillin G","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pentamidine isethionate","","1730370","Pentamidine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pentastarch","","40161354","Pentastarch","Drug","RxNorm","","2009-07-05 00:00:00","2099-12-31 00:00:00","","" -"pentazocine","","1130585","Pentazocine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pentobarbital sodium","","730729","Pentobarbital","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pentostatin","","19031224","Pentostatin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"peramivir","","40167569","peramivir","Drug","RxNorm","","2009-11-01 00:00:00","2099-12-31 00:00:00","","" -"perflexane lipid microspheres","","45775689","perflexane","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"perflutren lipid microspheres","","19071160","Perflutren","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"perphenazine","","733008","Perphenazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pertuzumab","","42801287","pertuzumab","Drug","RxNorm","","2012-07-02 00:00:00","2099-12-31 00:00:00","","" -"phenobarbital sodium","","734275","Phenobarbital","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"phentolamine mesylate","","1335539","Phentolamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"phenylephrine hcl","","1135766","Phenylephrine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"phenytoin sodium","","740910","Phenytoin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"phytonadione (vitamin k)","","19044727","Vitamin K 1","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"piperacillin sodium","","1746114","Piperacillin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"plasma protein fraction (human)","","19025693","plasma protein fraction","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"platelet rich plasma","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"plerixafor","","19017581","Plerixafor","Drug","RxNorm","","2009-01-04 00:00:00","2099-12-31 00:00:00","","" -"plicamycin","","19009165","Plicamycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pneumococcal conjugate vaccine","","513909","heptavalent pneumococcal conjugate vaccine","Drug","RxNorm","D","2005-09-11 00:00:00","2016-05-01 00:00:00","","" -"pneumococcal vaccine","","513909","heptavalent pneumococcal conjugate vaccine","Drug","RxNorm","D","2005-09-11 00:00:00","2016-05-01 00:00:00","","" -"porfimer sodium","","19090420","Porfimer Sodium","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"potassium chloride","","19049105","Potassium Chloride","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pralatrexate","","40166461","Pralatrexate","Drug","RxNorm","","2009-10-04 00:00:00","2099-12-31 00:00:00","","" -"pralidoxime chloride","","1727468","pralidoxime","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prednisolone","","1550557","prednisolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prednisolone acetate","","1550557","prednisolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prednisone","","1551099","Prednisone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prescription drug","","","","","","","","","","" -"procainamide hcl","","1351461","Procainamide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"procarbazine hydrochloride","","1351779","Procarbazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prochlorperazine","","752061","Prochlorperazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"prochlorperazine maleate","","752061","Prochlorperazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"progesterone","","1552310","Progesterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"promazine hcl","","19052903","Promazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"promethazine hcl","","1153013","Promethazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"promethazine hydrochloride","","1153013","Promethazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"propofol","","753626","Propofol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"propranolol hcl","","1353766","Propranolol","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"protamine sulfate","","19054242","Protamine Sulfate (USP)","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"protein c concentrate","","42801108","Protein C","Drug","RxNorm","","2012-07-02 00:00:00","2099-12-31 00:00:00","","" -"prothrombin complex concentrate (human), kcentra","","44507865","Prothrombin","Drug","RxNorm","","2013-12-02 00:00:00","2099-12-31 00:00:00","","" -"protirelin","","19001701","Thyrotropin-Releasing Hormone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"pyridoxine hcl","","42903728","PYRIDOXINE DIPALMITATE","Drug","RxNorm","","2012-12-03 00:00:00","2099-12-31 00:00:00","","" -"quinupristin","","1789515","quinupristin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"radiesse","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ramucirumab","","44818489","ramucirumab","Drug","RxNorm","","2014-06-02 00:00:00","2099-12-31 00:00:00","","" -"ranibizumab","","19080982","ranibizumab","Drug","RxNorm","","2006-08-27 00:00:00","2099-12-31 00:00:00","","" -"ranitidine hydrochloride","","961047","Ranitidine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"rasburicase","","1304565","Rasburicase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"regadenoson","","19090761","regadenoson","Drug","RxNorm","","2008-06-01 00:00:00","2099-12-31 00:00:00","","" -"respiratory syncytial virus immune globulin","","19013765","respiratory syncytial virus immune globulin intravenous","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"reteplase","","19024191","Reteplase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"rho d immune globulin","","535714","Rho(D) Immune Globulin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"rho(d) immune globulin (human)","","535714","Rho(D) Immune Globulin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"rilonacept","","19023450","rilonacept","Drug","RxNorm","","2008-03-30 00:00:00","2099-12-31 00:00:00","","" -"rimabotulinumtoxinb","","40166020","rimabotulinumtoxinB","Drug","RxNorm","","2009-09-06 00:00:00","2099-12-31 00:00:00","","" -"rimantadine hydrochloride","","1763339","Rimantadine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"risperidone","","735979","Risperidone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"rituximab","","1314273","rituximab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"romidepsin","","40168385","romidepsin","Drug","RxNorm","","2009-12-06 00:00:00","2099-12-31 00:00:00","","" -"romiplostim","","19032407","romiplostim","Drug","RxNorm","","2008-09-28 00:00:00","2099-12-31 00:00:00","","" -"ropivacaine hydrochloride","","1136487","ropivacaine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"saquinavir","","1746244","Saquinavir","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sargramostim (gm-csf)","","1308432","sargramostim","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sculptra","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"secretin","","19066188","Secretin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sermorelin acetate","","19077457","Sermorelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sildenafil citrate","","1316262","sildenafil","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"siltuximab","","44818461","siltuximab","Drug","RxNorm","","2014-06-02 00:00:00","2099-12-31 00:00:00","","" -"sincalide","","19067803","Sincalide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"single vitamin/mineral/trace element","","","","","","","","","","" -"sipuleucel-t","","40224095","sipuleucel-T","Drug","RxNorm","","2010-08-01 00:00:00","2099-12-31 00:00:00","","" -"sirolimus","","19034726","Sirolimus","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sodium bicarbonate","","939506","Sodium Bicarbonate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sodium chloride","","967823","Sodium Chloride","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sodium ferric gluconate complex in sucrose injection","","1399177","Sodium ferric gluconate complex","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sodium hyaluronate","","787787","hyaluronate","Drug","RxNorm","","2006-04-02 00:00:00","2099-12-31 00:00:00","","" -"sodium lactate","","19011035","Lactate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sodium phosphate","","939871","sodium phosphate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"somatrem","","1578181","somatrem","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"somatropin","","1584910","Somatropin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"spectinomycin dihydrochloride","","1701651","Spectinomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"state supplied vaccine","","","","","","","","","","" -"sterile cefuroxime sodium","","1778162","Cefuroxime","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sterile dilutant","","","","","","","","","","" -"sterile saline or water","","","","","","","","","","" -"sterile water","","","","","","","","","","" -"sterile water/saline","","","","","","","","","","" -"streptokinase","","19136187","Streptokinase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"streptomycin","","1836191","Streptomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"streptozocin","","19136210","Streptozocin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"succinylcholine chloride","","836208","Succinylcholine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sulbactam","","1836241","Sulbactam","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sulfamethoxazole","","1836430","Sulfamethoxazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"sulfur hexafluoride lipid microsphere","","45892833","Sulfur Hexafluoride","Drug","RxNorm","","2015-03-02 00:00:00","2099-12-31 00:00:00","","" -"sulfur hexafluoride lipid microspheres","","45892833","Sulfur Hexafluoride","Drug","RxNorm","","2015-03-02 00:00:00","2099-12-31 00:00:00","1","" -"sumatriptan succinate","","1140643","Sumatriptan","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"syringe","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"syringe with needle","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tacrine hydrochloride","","836654","Tacrine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tacrolimus","","950637","Tacrolimus","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"taliglucerace alfa","","42800246","taliglucerase alfa","Drug","RxNorm","","2012-06-04 00:00:00","2099-12-31 00:00:00","","" -"taliglucerase alfa","","42800246","taliglucerase alfa","Drug","RxNorm","","2012-06-04 00:00:00","2099-12-31 00:00:00","","" -"tamoxifen citrate","","1436678","Tamoxifen","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tazobactam","","1741122","tazobactam","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tbo-filgrastim","","1304850","Filgrastim","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tedizolid phosphate","","45775686","tedizolid","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"telavancin","","40166675","telavancin","Drug","RxNorm","","2009-10-04 00:00:00","2099-12-31 00:00:00","","" -"temozolomide","","1341149","temozolomide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"temsirolimus","","19092845","temsirolimus","Drug","RxNorm","","2007-07-29 00:00:00","2099-12-31 00:00:00","","" -"tenecteplase","","19098548","Tenecteplase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"teniposide","","19136750","Teniposide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"terbutaline sulfate","","1236744","Terbutaline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"teriparatide","","1521987","Teriparatide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone cypionate","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone enanthate","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone pellet","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone propionate","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone suspension","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"testosterone undecanoate","","1636780","Testosterone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tetanus immune globulin","","561401","Tetanus immune globulin, human","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tetracaine","","1036884","Tetracaine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tetracycline","","1836948","Tetracycline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"theophylline","","1237049","Theophylline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"thiamine hcl","","19137312","Thiamine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"thiethylperazine maleate","","1037358","Thiethylperazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"thiotepa","","19137385","Thiotepa","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"thyrotropin alpha","","19007721","Thyrotropin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ticarcillin","","1759842","Clavulanate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tigecycline","","1742432","tigecycline","Drug","RxNorm","","2005-11-13 00:00:00","2099-12-31 00:00:00","","" -"tinzaparin sodium","","1308473","tinzaparin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tirofiban hcl","","19017067","tirofiban","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tissue marker","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tobramycin","","902722","Tobramycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tobramycin sulfate","","902722","Tobramycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tocilizumab","","40171288","tocilizumab","Drug","RxNorm","","2010-01-31 00:00:00","2099-12-31 00:00:00","","" -"tolazoline hcl","","19002829","Tolazoline","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"topotecan","","1378509","Topotecan","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"torsemide","","942350","torsemide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tositumomab","","19068894","tositumomab","Drug","RxNorm","","2008-06-29 00:00:00","2099-12-31 00:00:00","","" -"trastuzumab","","1387104","trastuzumab","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"treprostinil","","1327256","Treprostinil","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"tretinoin","","903643","Tretinoin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triamcinolone","","903963","Triamcinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triamcinolone acetonide","","903963","Triamcinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triamcinolone diacetate","","903963","Triamcinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triamcinolone hexacetonide","","903963","Triamcinolone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triflupromazine hcl","","19005104","Triflupromazine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"trimethobenzamide hcl","","942799","trimethobenzamide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"trimethobenzamide hydrochloride","","942799","trimethobenzamide","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"trimethoprim","","1705674","Trimethoprim","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"trimetrexate glucuronate","","1750928","Trimetrexate","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"triptorelin pamoate","","1343039","Triptorelin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"unit","","8510","unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"unit","","8718","international unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"units","","8510","unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","1","1" -"units","","8718","international unit","Unit","UCUM","","1970-01-01 00:00:00","2099-12-31 00:00:00","2","1" -"urea","","906914","Urea","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"urofollitropin","","1515417","Urofollitropin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"urokinase","","1307515","Urokinase","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ustekinumab","","40161532","ustekinumab","Drug","RxNorm","","2009-07-05 00:00:00","2099-12-31 00:00:00","","" -"vaccine for part d drug","","","","","","","","","","" -"valrubicin","","19012543","valrubicin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vancomycin hcl","","1707687","Vancomycin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vascular graft material, synthetic","","0","No matching concept","Metadata","None","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vedolizumab","","45774639","vedolizumab","Drug","RxNorm","","2014-12-01 00:00:00","2099-12-31 00:00:00","","" -"velaglucerase alfa","","40174604","velaglucerase alfa","Drug","RxNorm","","2010-04-04 00:00:00","2099-12-31 00:00:00","","" -"verteporfin","","912803","Verteporfin","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vinblastine sulfate","","19008264","Vinblastine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vincristine sulfate","","1308290","Vincristine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vincristine sulfate liposome","","1308290","Vincristine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vinorelbine tartrate","","1343346","vinorelbine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"vitamin b-12 cyanocobalamin","","1308738","Vitamin B 12","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"von willebrand factor complex","","44785885","von Willebrand factor","Drug","RxNorm","","2014-03-03 00:00:00","2099-12-31 00:00:00","","" -"von willebrand factor complex (human)","","44785885","von Willebrand factor","Drug","RxNorm","","2014-03-03 00:00:00","2099-12-31 00:00:00","","" -"von willebrand factor complex (humate-p)","","44785885","von Willebrand factor","Drug","RxNorm","","2014-03-03 00:00:00","2099-12-31 00:00:00","","" -"voriconazole","","1714277","voriconazole","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"water","","","","","","","","","","" -"zalcitabine (ddc)","","1724827","Zalcitabine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ziconotide","","19005061","ziconotide","Drug","RxNorm","","2005-07-24 00:00:00","2099-12-31 00:00:00","","" -"zidovudine","","1710612","Zidovudine","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ziprasidone mesylate","","712615","ziprasidone","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"ziv-aflibercept","","40244266","aflibercept","Drug","RxNorm","","2011-12-04 00:00:00","2099-12-31 00:00:00","","" -"zoledronic acid","","1524674","zoledronic acid","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"zoledronic acid (reclast)","","1524674","zoledronic acid","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" -"zoledronic acid (zometa)","","1524674","zoledronic acid","Drug","RxNorm","","1970-01-01 00:00:00","2099-12-31 00:00:00","","" diff --git a/vocabulary_data/dev_icd10cm/manual_table_extract.sql b/vocabulary_data/dev_icd10cm/manual_table_extract.sql deleted file mode 100644 index 4453dcb..0000000 --- a/vocabulary_data/dev_icd10cm/manual_table_extract.sql +++ /dev/null @@ -1,72 +0,0 @@ -SET LINESIZE 1024 -SET ECHO OFF -SET HEADING OFF -SET FEEDBACK OFF -SET VERIFY OFF -SET NEWPAGE NONE --- SET COLSEP ';' - -COLUMN exp_file_name new_val exp_file_name -SELECT '&1'|| '/' || '&2' AS exp_file_name FROM dual; -SPOOL &&exp_file_name - -WITH mt AS (SELECT CONCEPT_CODE_1, - CONCEPT_NAME_1, - VOCABULARY_ID_1, - INVALID_REASON_1, - CONCEPT_CODE_2, - CONCEPT_NAME_2, - CONCEPT_CLASS_ID_2, - VOCABULARY_ID_2, - INVALID_REASON_2, - RELATIONSHIP_ID , - TO_CHAR(VALID_START_DATE, 'YYYY-MM-DD HH24:MI:SS') AS VALID_START_DATE, - TO_CHAR(VALID_END_DATE, 'YYYY-MM-DD HH24:MI:SS') AS VALID_END_DATE, - INVALID_REASON - FROM &3 - ORDER BY CONCEPT_CODE_1, - CONCEPT_NAME_1, - VOCABULARY_ID_1, - INVALID_REASON_1, - CONCEPT_CODE_2, - CONCEPT_NAME_2, - CONCEPT_CLASS_ID_2, - VOCABULARY_ID_2, - INVALID_REASON_2, - RELATIONSHIP_ID, - VALID_START_DATE, - VALID_END_DATE, - INVALID_REASON) -SELECT 'CONCEPT_CODE_1' || ',' - || 'CONCEPT_NAME_1' || ',' - || 'VOCABULARY_ID_1' || ',' - || 'INVALID_REASON_1' || ',' - || 'CONCEPT_CODE_2' || ',' - || 'CONCEPT_NAME_2' || ',' - || 'CONCEPT_CLASS_ID_2' || ',' - || 'VOCABULARY_ID_2' || ',' - || 'INVALID_REASON_2' || ',' - || 'RELATIONSHIP_ID' || ',' - || 'VALID_START_DATE' || ',' - || 'VALID_END_DATE' || ',' - || 'INVALID_REASON' || CHR(13)||CHR(10) AS "&3 DATA" -FROM DUAL -UNION ALL -SELECT '"' || mt.CONCEPT_CODE_1 || '",' - || '"' || mt.CONCEPT_NAME_1 || '",' - || '"' || mt.VOCABULARY_ID_1 || '",' - || '"' || mt.INVALID_REASON_1 || '",' - || '"' || mt.CONCEPT_CODE_2 || '",' - || '"' || mt.CONCEPT_NAME_2 || '",' - || '"' || mt.CONCEPT_CLASS_ID_2 || '",' - || '"' || mt.VOCABULARY_ID_2 || '",' - || '"' || mt.INVALID_REASON_2 || '",' - || '"' || mt.RELATIONSHIP_ID || '",' - || '"' || mt.VALID_START_DATE || '",' - || '"' || mt.VALID_END_DATE || '",' - || '"' || mt.INVALID_REASON || '"' || CHR(13)||CHR(10) -FROM mt -; - -SPOOL OFF -EXIT \ No newline at end of file diff --git a/vocabulary_data/dev_icd10cm/manual_work_result/manual_work_result.zip b/vocabulary_data/dev_icd10cm/manual_work_result/manual_work_result.zip deleted file mode 100644 index 220825f..0000000 Binary files a/vocabulary_data/dev_icd10cm/manual_work_result/manual_work_result.zip and /dev/null differ diff --git a/vocabulary_data/dev_icd10cm/manual_work_result/mock_manual_table_data.csv b/vocabulary_data/dev_icd10cm/manual_work_result/mock_manual_table_data.csv deleted file mode 100644 index 9db39ba..0000000 --- a/vocabulary_data/dev_icd10cm/manual_work_result/mock_manual_table_data.csv +++ /dev/null @@ -1,11 +0,0 @@ -CONCEPT_ID,CONCEPT_NAME,DOMAIN_ID,VOCABULARY_ID,CONCEPT_CLASS_ID,STANDARD_CONCEPT,CONCEPT_CODE,VALID_START_DATE,VALID_END_DATE,INVALID_REASON -42478670,MANUAL EDITTED tolterodine 2 MG Oral Tablet [Detrol] by Necessity Supplies,Drug,RxNorm Extension,Marketed Product,S,OMOP420494,17-AUG-15,31-DEC-99, -45956931,MANUAL EDITTED Self-emulsifying glyceryl monostearate,Observation,SNOMED,Substance,S,3578611000001105,01-JAN-70,31-DEC-99, -45956932,MANUAL EDITTED Cetomacrogol emulsifying wax,Observation,SNOMED,Substance,S,3521711000001107,01-JAN-70,31-DEC-99, -45956933,MANUAL EDITTED Sodium acid phosphate anhydrous,Observation,SNOMED,Substance,S,3579511000001100,01-JAN-70,31-DEC-99, -45956934,MANUAL EDITTED Total sennosides,Observation,SNOMED,Substance,S,3585711000001100,01-JAN-70,31-DEC-99, -45956935,MANUAL EDITTED Sibutramine hydrochloride,Observation,SNOMED,Substance,S,3579011000001108,01-JAN-70,31-DEC-99, -45956936,MANUAL EDITTED Activated dimeticone,Observation,SNOMED,Substance,,3510011000001105,01-JAN-70,04-OCT-16,D -45956937,MANUAL EDITTED Tacrolimus monohydrate,Observation,SNOMED,Substance,S,3582511000001104,01-JAN-70,31-DEC-99, -45956938,MANUAL EDITTED Aluminium hydroxide dried,Observation,SNOMED,Substance,S,3511711000001104,01-JAN-70,31-DEC-99, -45956939,MANUAL EDITTED Meptazinol hydrochloride,Observation,SNOMED,Substance,S,3568811000001102,01-JAN-70,31-DEC-99,