Hi, i am trying to run mlst_check and i am getting this error . could you please help me out?
*get_sequence_type -s "Pseudomonas aeruginosa" .fna
Can't locate Bio/Perl.pm in @inc (you may need to install the Bio::Perl module) (@inc contains: /software/pathogen/internal/prod/lib ./lib ../lib /home/bvs/perl5/lib/perl5/x86_64-linux-thread-multi /home/bvs/perl5/lib/perl5 /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2 /home/bvs/anaconda3/envs/myenv/lib/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/5.26.2 .) at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.
Thank you
Hi, i am trying to run mlst_check and i am getting this error . could you please help me out?
*get_sequence_type -s "Pseudomonas aeruginosa" .fna
Can't locate Bio/Perl.pm in @inc (you may need to install the Bio::Perl module) (@inc contains: /software/pathogen/internal/prod/lib ./lib ../lib /home/bvs/perl5/lib/perl5/x86_64-linux-thread-multi /home/bvs/perl5/lib/perl5 /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2 /home/bvs/anaconda3/envs/myenv/lib/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/5.26.2 .) at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.
Thank you