From 5d2212dcf0b5d4b5b5f5ec9c0669d5d26216fc3f Mon Sep 17 00:00:00 2001 From: Justin Pringle Date: Fri, 20 May 2022 09:46:04 +0200 Subject: [PATCH] Update pretreatment.py editing lines 194 and 201 for networkx v>2.6 --- pytopkapi/pretreatment.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pytopkapi/pretreatment.py b/pytopkapi/pretreatment.py index cab63d3..887d244 100644 --- a/pytopkapi/pretreatment.py +++ b/pytopkapi/pretreatment.py @@ -191,14 +191,14 @@ def sort_cell(ar_cell_label, ar_cell_down): """ network_dag = _generate_network_dag(ar_cell_label, ar_cell_down) - ar_label_sort = np.array(nx.topological_sort(network_dag)) + ar_label_sort = np.array(list(nx.topological_sort(network_dag))) return ar_label_sort def compute_node_hierarchy(nodes, downstream_nodes): network_dag = _generate_network_dag(nodes, downstream_nodes) - dag_copy = nx.copy.deepcopy(network_dag) + dag_copy = network_dag.copy() level = 0 node_hierarchy = {}