Something's not right
We can't find that page. Please try a different request.
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{% if message %}
Details: {{message}}{% endif %}
We can't find that page. Please try a different request.
-Details: {{message}}{% endif %}
Something's gone terribly wrong. We're working on it! (Error 500)
- + {% if message %}Details:
{{message}}
ISMMS Health Check is a new lightweight web app to simplify health workflows at ISMMS - through automated follow-up of medical protocols or critical health values. We have created if-this-then-that + through automated follow-up of medical protocols for critical health values. We have created if-this-then-that style triggers for health data that takes the burden off health care providers to perform follow-up while collecting data from patients and providers automatically.
+Developed by Ryan Neff (MD/PhD Class of 2023) on behalf of the Mount Sinai Department of Medical Education (Dr. Valerie Parkas, Dr. Beverly Forsyth, and Dr. Rainier Soriano) and Mount Sinai Student Health (Dr. Lori Zbar). Special thanks to Michelle Sainte at MedEd and everyone at Mount Sinai Information Technology (Ben Maisano, Paul Laurence, Ricardo Somarriba).
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Errors: {{form.errors}}
- {% endif %} {% block form %}In order to complete this survey, you first need to register your device to save and view your responses. This process will only happen once and take a few seconds. Clearing your browser cookies will delete your registration.
Please use the same device and browser for future visits to skip this step and track your responses.
@@ -25,7 +22,7 @@These questions are completely optional and will only be used to contact you should your symptoms change. They will be kept private and confidential. Only Mount Sinai Student Health has access to this information. It will not be shared with other Mount Sinai faculty or staff.
- {{render_field(form.email)}} {{render_field(form.phone)}} - {{render_field(form.fullname)}} {{render_field(form.age)}} diff --git a/medtracker/templates/index.html b/medtracker/templates/index.html index 469d796..b282549 100755 --- a/medtracker/templates/index.html +++ b/medtracker/templates/index.html @@ -2,7 +2,7 @@ {% block title %}Welcome | ISMMS Health Check{% endblock %} {% block body %}
+
Check your symptoms for COVID-19 daily from anywhere, whether at home or on-the go. No login necessary.
@@ -10,12 +10,12 @@
How does this work?
+How does this work?
Take the quick screening tool daily to screen for possible COVID-19 symptoms. No need to login and you may choose to keep your responses anonymous.
+Take the quick screening tool daily to screen for possible COVID-19 symptoms. Coming soon: save your responses across your devices with your Mount Sinai Google Apps account.
@@ -28,5 +28,17 @@ If you screen positive, stay home and protect others from the spread of the novel coronavirus.
Where can I find updates on COVID-19 policies?
+
+ Built specifically for medical and graduate students at Mount Sinai, the MedInfo App has the most up-to-date information on infection prevention policy, travel registry, testing, weekly communications, clerkship resources... and more!
+| Device ID | +Name / Device ID | Year | Program | Location | @@ -44,7 +44,7 @@||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| {{fmt_id(patient.mrn)}} | +{{patient.fullname}} ({{fmt_id(patient.mrn)}}) | {{patient.year}} | {{patient.program}} | {{patient.location}} | diff --git a/medtracker/templates/responses.html b/medtracker/templates/responses.html index 203de24..9db9475 100755 --- a/medtracker/templates/responses.html +++ b/medtracker/templates/responses.html @@ -2,14 +2,14 @@ {% block title %}Responses | ISMMS Health Check{% endblock %} {% block body %}
| # | Time | -Patient | +Name / Device ID | Survey | Question | Response | @@ -19,7 +19,7 @@
|---|---|---|---|---|---|---|
| {{loop.index}} | {{momentjs(response.time).calendar()}} | -{{response.patient.fullname}} ({{response.patient.mrn}}) | +{{response.patient.fullname}} ({{fmt_id(response.patient.mrn)}}) | {{response.question.survey.title}} | {{response.question.body}} | {{response._response}} | diff --git a/medtracker/templates/survey_complete.html b/medtracker/templates/survey_complete.html index 8000fa1..0ea43b2 100755 --- a/medtracker/templates/survey_complete.html +++ b/medtracker/templates/survey_complete.html @@ -1,21 +1,75 @@ {% extends "layout.html" %} {% block title %}Completed: {{survey.title}} | ISMMS Health Check{% endblock %} {% block body %} -
| Device ID: | {{ fmt_id(patient.mrn) }} | |||||
| Program: | {{patient.program}} | +|||||
| Name: | {% if patient.fullname %}{{patient.fullname}}{% else %}(Not Provided){% endif %} | |||||
| Location: | {{patient.location}} | +E-mail: | {% if patient.email %}{{patient.email}}{% else %}(Not Provided){% endif %} | |||
| Year: | {{patient.year}} | +Life Number: | {% if patient.lifenumber %}{{patient.lifenumber}}{% else %}(Not Provided){% endif %} | |||
| Name: | {% if patient.fullname %}{{patient.fullname}}{% else %}(Not Provided){% endif %} | + + +|||||
| Program: | {{patient.program}} | |||||
| Age: | {% if patient.age %}{{patient.age}}{% else %}(Not Provided){% endif %} | +Year: | {{patient.year}} | |||
| E-mail: | {% if patient.email %}{{patient.email}}{% else %}(Not Provided){% endif %} | +Location: | {{patient.location}} | |||
| Phone: | {% if patient.phone %}{{patient.phone}}{% else %}(Not Provided){% endif %} | |||||
| Age: | {% if patient.age %}{{patient.age}}{% else %}(Not Provided){% endif %} | +
{{response.body}}
diff --git a/medtracker/views.py b/medtracker/views.py index dc7c369..42caa28 100755 --- a/medtracker/views.py +++ b/medtracker/views.py @@ -13,11 +13,14 @@ import pandas as pd import numpy as np import datetime +import plotly import plotly.graph_objects as go import ast from collections import defaultdict from datetime import timezone -from sqlalchemy import or_ +import time +from sqlalchemy import or_ +from sqlalchemy import func, cast, Date from pytz import timezone as pytztimezone tz = pytztimezone('EST') @@ -84,19 +87,28 @@ def detect_user_session(): if (patient_ident_req is None)|(g.device is None): g.patient_ident = randomword(16) + flash("The COVID19 tracker will be retired on July 1st, 2021. No new devices may be registered. Your device is currently unregistered.") # when the response exists, set a cookie with the language - @after_this_request - def remember_pt_id(response): - response.set_cookie('patient_ident', g.patient_ident, max_age=datetime.timedelta(weeks=52)) - device = Device(device_id = g.patient_ident) - db.session.add(device) - db.session.commit() - g.device = device - return response + #@after_this_request + #def remember_pt_id(response): + #response.set_cookie('patient_ident', g.patient_ident, max_age=datetime.timedelta(weeks=52)) + #device = Device(device_id = g.patient_ident) + #db.session.add(device) + #db.session.commit() + #g.device = device + #return response else: g.patient_ident = g.device.device_id g.patient = Patient.query.filter_by(mrn=g.patient_ident).first() + @after_this_request + def refresh_pt_id(response): + if hasattr(g,"flashed") == False: + response.set_cookie('patient_ident', g.patient_ident, max_age=(datetime.datetime(2021,7,1)-datetime.datetime.now())) + flash("The COVID19 tracker will be retired on July 1st, 2021. Your device will be unregistered automatically at that time.") + g.flashed=True + return response + if current_user.is_authenticated: current_user.surveys = Survey.query current_user.patients = Patient.query @@ -209,15 +221,15 @@ def reset_password_with_token(token): db.session.add(user) db.session.commit() flash('Your password was successfully changed.') - return redirect(url_for('serve_survey_index')) + return redirect(url_for('serve_survey_index')) return render_template('reset_password.html', form=form) def send_reset_email(user, app=app): '''send an email to reset the user's password''' # look for configuration variables in params.conf file... - msg = Message(sender="ryan.neff@icahn.mssm.edu") - msg.subject = "ISMMS Student Health Check Password Reset Request" - msg.sender = "ryan.neff@icahn.mssm.edu" + msg = Message(sender=config.mail_server_sender) + msg.subject = "ISMMS Student Health Check Password Reset Request" + msg.sender = config.mail_server_sender msg.recipients = [user.email] user.reset_token = randomword(24) with app.app_context(): @@ -228,14 +240,55 @@ def send_reset_email(user, app=app): db.session.commit() return None -#### index pages +def check_patient_identified(patient): + # Check that the person has filled out all the required fields + # Required: full name, email, life number + if patient==None: + return False + not_failed = True + if (patient.fullname==None)|(patient.lifenumber==None)|(patient.email==None): + return False + if (len(patient.fullname) > 50)|(len(patient.fullname) < 3): + not_failed=False + email_regex = re.compile("(\S+(@icahn.mssm.edu|@mssm.edu|@mountsinai.org)$)") + if email_regex.match(str(patient.email))==None: + not_failed=False + lifenum_regex = re.compile("^(\d{7})$") + if lifenum_regex.match(str(patient.lifenumber))==None: + not_failed=False + return not_failed + +def send_survey_response_email(patient, record, app=app): + '''send an email to reset the user's password''' + # look for configuration variables in params.conf file... + try: + msg = Message(sender=config.mail_server_sender) + msg.subject = record.survey.title + " taken on " + record.end_time.strftime('%B %-d, %Y') + msg.sender = config.mail_server_sender + msg.recipients = [patient.email] + record.end_time = record.end_time.replace(tzinfo=pytz.utc).astimezone(pytz.timezone('America/New_York')) + with app.app_context(): + if record.completed: + msg.html = render_template('email_survey_complete.html', patient=patient,record=record) + msg.body = render_template('email_survey_complete.txt', patient=patient,record=record) + elif record.exited: + msg.cc = ["StudentCovidResponse@mssm.edu"] + msg.html = render_template('email_survey_exit.html', patient=patient,record=record) #change me! + msg.body = render_template('email_survey_exit.txt', patient=patient,record=record) #change me! + mail.send(msg) + except: + return None + return None @app.route("/", methods=['GET']) @app.route("/index.html", methods=['GET']) def index(): g.patient = Patient.query.filter_by(mrn=g.patient_ident).first() if g.patient == None: - flash("Your device appears to be unregistered. Please register your device.") + pass + #flash("Your device appears to be unregistered. Please register your device.") + elif check_patient_identified(g.patient)==False: + flash("Due to changes at Student Health, please update your records before continuing.") return render_template("index.html") @app.route("/about", methods=["GET"]) @@ -253,9 +306,6 @@ def serve_survey_index(): except: s.description_html = '' + s.description + '
' surveys.append(s) - for s in surveys: - print(s) - print(s.description_html) return render_template("surveys.html", surveys = surveys) @@ -263,7 +313,9 @@ def serve_survey_index(): @flask_login.login_required def serve_responses_index(): '''GUI: serve the response index page''' - responses = QuestionResponse.query.filter(QuestionResponse.time > datetime.datetime.utcnow()-datetime.timedelta(days=3)) + today = datetime.datetime.now().astimezone(pytz.timezone('US/Eastern')).replace(hour=0,minute=0,second=0,microsecond=0).astimezone(timezone.utc).replace(tzinfo=None) + responses = QuestionResponse.query.filter(QuestionResponse.time>today).all() + return render_template("responses.html", responses = responses) @@ -338,7 +390,12 @@ def start_survey(survey_id): '''TODO: need to select the patient which will be taking the survey. This will make this starting block a form.''' if g.patient == None: return redirect(url_for('patient_signup',survey_id=survey_id)) + if check_patient_identified(g.patient) ==False: + flash("Please update your records before completing new screenings.") + return redirect(url_for('edit_patient_self',next=request.path)) session_id = randomword(32) + while SurveyResponse.query.filter(SurveyResponse.session_id==session_id).count() > 0: + session_id = randomword(32) u = request.values.get('u', g.patient.id) survey = Survey.query.get_or_404(survey_id) patients = None @@ -355,16 +412,19 @@ def serve_survey(survey_id): if g.patient == None: return redirect(url_for('patient_signup',survey_id=survey_id)) today = datetime.datetime.now().date() - previous_responses = SurveyResponse.query.filter(SurveyResponse.uniq_id==g.patient.id, - SurveyResponse.end_time.isnot(None),SurveyResponse.start_time>today).first() - if (current_user.is_authenticated==False) & (previous_responses!=None): - return render_template("survey_quit.html",survey=survey, patient=g.patient,message="You can only take the survey once per day.") - + previous_responses = SurveyResponse.query.filter(SurveyResponse.uniq_id==g.patient.id).\ + filter(SurveyResponse.end_time.isnot(None),SurveyResponse.start_time>today).first() + #if (current_user.is_authenticated==False) & (previous_responses!=None): + #return render_template("survey_quit.html",survey=survey, patient=g.patient,message="You can only take the survey once per day.") + survey_response_id = request.values.get("sr", None) question_id = request.values.get("question", None) uniq_id = request.values.get("u", None) sess = request.values.get("s", None) + while SurveyResponse.query.filter(SurveyResponse.session_id==sess).count() > 1: + sess = randomword(32) + if survey.head == None: return render_template("view_survey.html", survey = survey) if question_id == None: @@ -382,7 +442,7 @@ def serve_survey(survey_id): survey_response = SurveyResponse.query.get_or_404(survey_response_id) formobj = QuestionView().get(question) if (request.method == 'POST') & (len(request.form.getlist("response"))!=0): - print("saving...") + #print("saving...") next_question, next_survey, exit, complete, message = save_response(request.form, question_id, session_id = sess, survey_response_id = survey_response.id) if next_question != None: return redirect(url_for("serve_survey",survey_id=survey.id,u=uniq_id,s=sess,sr=survey_response_id,question=next_question)) @@ -393,20 +453,22 @@ def serve_survey(survey_id): survey_response.message = message db_session.add(survey_response) db_session.commit() - return redirect(url_for("exit_survey", session_id=survey_response.session_id)) + send_survey_response_email(g.patient,survey_response) + return redirect(url_for("exit_survey", sr_id=survey_response.id, session_id=survey_response.session_id)) if complete: ##complete survey! survey_response.complete() survey_response.message = message db_session.add(survey_response) db_session.commit() - return redirect(url_for("complete_survey", session_id=survey_response.session_id)) + send_survey_response_email(g.patient,survey_response) + return redirect(url_for("complete_survey", sr_id=survey_response.id, session_id=survey_response.session_id)) return redirect(url_for('serve_survey', survey_id=survey_id, question=next_question, u=uniq_id, s=sess, sr = survey_response.id)) else: - print(request.form.getlist("response")) - print(len(request.form.getlist("response"))) - print(request.method) + #print(request.form.getlist("response")) + #print(len(request.form.getlist("response"))) + #print(request.method) if (request.method == 'POST') & (len(request.form.getlist("response"))==0): - print("failed!!") + #print("failed!!") flash("Please select a response") try: question.description_html = delta_html.render(json.loads(question.description)["ops"]) @@ -429,9 +491,9 @@ def reset_device(): flash("Device ID reset. You will need to register with ISMMS Health Check again to complete surveys.") return response -@app.route("/exit/