preamble.sty

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% PREAMBLE

%%%%%%%%% Packages used in sample chapters (not otherwise required) %%%%%%%

%% Package for code listing in Appendix A.
\usepackage{listings}%   documentation is here https://ctan.org/pkg/listings
\usepackage{fontspec}
% \setmonofont{Consolas}

% Below you have a set of styles for python code to be used in the manuscript
% Default mittemplate listing style
\lstdefinestyle{mystyle}{
	backgroundcolor=\color{CadetBlue!15!white},
	commentstyle=\color{Red3},
	numberstyle=\tiny\color{gray},
	stringstyle=\color{Blue3},
	basicstyle=\small\ttfamily,
	breakatwhitespace=false,
	breaklines=true,
	numbers=left,
	numbersep=5pt,
	showspaces=false,
	showstringspaces=false,
	showtabs=false,
	tabsize=2
}%
% ========== Github Dark ========== 
% Adapted from the Molokai implementation: https://gist.github.com/nhtranngoc/88b72d9bfb656a3de227eea38ed80627
% Colors taken from: https://github.com/vv9k/vim-github-dark
\definecolor{ghblack}{HTML}{0D1117}
\definecolor{ghdarkgray}{HTML}{161B22}
\definecolor{ghgray}{HTML}{21262D}
\definecolor{ghlightgray}{HTML}{89929B}
\definecolor{ghsilver}{HTML}{C6CDD5}
\definecolor{ghwhite}{HTML}{ECF2F8}
\definecolor{ghred}{HTML}{FA7970}
\definecolor{ghorange}{HTML}{FAA356}
\definecolor{ghgreen}{HTML}{7CE38B}
\definecolor{ghlightblue}{HTML}{A2D2FB}
\definecolor{ghblue}{HTML}{77BDFD}
\definecolor{ghpurp}{HTML}{CEA5FB}

\lstdefinestyle{githubDark}{
	numbers=left,                   		% where to put the line-numbers
	stepnumber=1,                   		% the step between two line-numbers.        
	numbersep=5pt,                  		% how far the line-numbers are from the code
	numberstyle=\tiny\color{ghsilver}\ttfamily,
	backgroundcolor=\color{ghblack},  		% choose the background color. You must add \usepackage{color}
	showspaces=false,               		% show spaces adding particular underscores
	showstringspaces=false,         		% underline spaces within strings
	showtabs=false,                 		% show tabs within strings adding particular underscores
	tabsize=2,                      		% sets default tabsize to 2 spaces
	captionpos=b,                   		% sets the caption-position to bottom
	breaklines=true,                		% sets automatic line breaking
	breakatwhitespace=true,         		% sets if automatic breaks should only happen at whitespace
	title=\lstname,                 		% show the filename of files included with \lstinputlisting;
	basicstyle=\color{ghwhite}\ttfamily,					% sets font style for the code
	keywordstyle=\color{ghred}\ttfamily,	% sets color for keywords
	keywordstyle=[2]\color{ghorange}\bfseries,
	stringstyle=\color{ghlightblue}\ttfamily,		% sets color for strings
	commentstyle=\color{ghlightgray}\ttfamily,	% sets color for comments
	emph={},	% Add here the keywords you want to emphasize
	emphstyle=\color{ghpurp}\ttfamily
}

% ========== Listing Style 2 ========== 
% Alternative of dark background listing
\lstdefinestyle{listing_style_2}{
	numbers=left,                   		% where to put the line-numbers
	stepnumber=1,                   		% the step between two line-numbers.        
	numbersep=5pt,                  		% how far the line-numbers are from the code
	numberstyle=\tiny\color{ghblack}\ttfamily,
	backgroundcolor=\color{ghgray},  		% choose the background color. You must add \usepackage{color}
	showspaces=false,               		% show spaces adding particular underscores
	showstringspaces=false,         		% underline spaces within strings
	showtabs=false,                 		% show tabs within strings adding particular underscores
	tabsize=2,                      		% sets default tabsize to 2 spaces
	captionpos=b,                   		% sets the caption-position to bottom
	breaklines=true,                		% sets automatic line breaking
	breakatwhitespace=true,         		% sets if automatic breaks should only happen at whitespace
	title=\lstname,                 		% show the filename of files included with \lstinputlisting;
	basicstyle=\small\color{ghwhite}\ttfamily,					% sets font style for the code
	keywordstyle=\color{ghlightblue}\ttfamily,	% sets color for keywords
	keywordstyle=[2]\color{ghorange}\bfseries,
	stringstyle=\color{ghgreen}\ttfamily,		% sets color for strings
	commentstyle=\color{ghred}\ttfamily,	% sets color for comments
	emph={},	% Add here the keywords you want to emphasize
	emphstyle=\color{ghpurp}\ttfamily,
	lineskip=3pt
}

% ========== Listing Style 3 ========== 
% Light theme
\definecolor{ltbackground}{HTML}{F7F7F7}
\definecolor{ltblack}{HTML}{0D1117}
\definecolor{ltdarkgray}{HTML}{161B22}
\definecolor{ltred}{HTML}{d52753}
\definecolor{ltorange}{HTML}{df631c}
\definecolor{ltgreen}{HTML}{23974a}
\definecolor{ltlightblue}{HTML}{0098dd}
\definecolor{ltblue}{HTML}{275fe4}
\definecolor{ltpurp}{HTML}{823ff1}

\lstdefinestyle{listing_style_3}{
	numbers=left,                   		% where to put the line-numbers
	stepnumber=1,                   		% the step between two line-numbers.        
	numbersep=5pt,                  		% how far the line-numbers are from the code
	numberstyle=\tiny\color{ltblack}\ttfamily,
	backgroundcolor=\color{ltbackground},  		% choose the background color. You must add \usepackage{color}
	showspaces=false,               		% show spaces adding particular underscores
	showstringspaces=false,         		% underline spaces within strings
	showtabs=false,                 		% show tabs within strings adding particular underscores
	tabsize=2,                      		% sets default tabsize to 2 spaces
	captionpos=b,                   		% sets the caption-position to bottom
	breaklines=true,                		% sets automatic line breaking
	breakatwhitespace=true,         		% sets if automatic breaks should only happen at whitespace
	title=\lstname,                 		% show the filename of files included with \lstinputlisting;
	basicstyle=\footnotesize\color{ltdarkgray}\ttfamily,					% sets font style for the code
	keywordstyle=\color{ltlightblue}\ttfamily,	% sets color for keywords
	keywordstyle=[2]\color{ltorange}\bfseries,
	stringstyle=\color{ltgreen}\ttfamily,		% sets color for strings
	commentstyle=\color{ltred}\ttfamily,	% sets color for comments
	emph={},	% Add here the keywords you want to emphasize
	emphstyle=\color{ltpurp}\ttfamily,
	lineskip=2pt
}

% ========== Listing Style 4 ========== 
% Light theme
\definecolor{ltbackground2}{HTML}{F7F7F7}
\definecolor{ltblack2}{HTML}{0D1117}
\definecolor{ltdarkgray2}{HTML}{161B22}
\definecolor{ltred2}{HTML}{BF4E63}
\definecolor{ltorange2}{HTML}{df631c}
\definecolor{ltgreen2}{HTML}{197330}
\definecolor{ltlightblue2}{HTML}{4586BF}
\definecolor{ltpurp2}{HTML}{823ff1}
\definecolor{ltlightgray}{HTML}{6E6E78}

\lstdefinestyle{listing_style_4}{
	numbers=left,                   		% where to put the line-numbers
	stepnumber=1,                   		% the step between two line-numbers.        
	numbersep=5pt,                  		% how far the line-numbers are from the code
	numberstyle=\tiny\color{ltblack2}\ttfamily,
	backgroundcolor=\color{ltbackground2},  		% choose the background color. You must add \usepackage{color}
	showspaces=false,               		% show spaces adding particular underscores
	showstringspaces=false,         		% underline spaces within strings
	showtabs=false,                 		% show tabs within strings adding particular underscores
	tabsize=2,                      		% sets default tabsize to 2 spaces
	captionpos=b,                   		% sets the caption-position to bottom
	breaklines=true,                		% sets automatic line breaking
	breakatwhitespace=true,         		% sets if automatic breaks should only happen at whitespace
	title=\lstname,                 		% show the filename of files included with \lstinputlisting;
	basicstyle=\footnotesize\color{ltdarkgray2}\ttfamily,					% sets font style for the code
	keywordstyle=\color{ltred2}\ttfamily,	% sets color for keywords
	keywordstyle=[2]\color{ltorange2}\bfseries,
	stringstyle=\color{ltlightblue2}\ttfamily,		% sets color for strings
	commentstyle=\color{ltlightgray}\ttfamily,	% sets color for comments
	emph={},	% Add here the keywords you want to emphasize
	emphstyle=\color{ltpurp2}\ttfamily,
	lineskip=1pt
}
% Style 4 is the chosen one for the moment
\lstset{language=[3]Python, style={listing_style_4}} %

%% Set chemical formulas nicely
\usepackage[version=4]{mhchem}%   documentation at https://ctan.org/pkg/mhchem

%% Latin filler used in Chapter 1, with a test for package version date (https://ctan.org/pkg/lipsum)
\usepackage{lipsum}
\IfPackageAtLeastTF{lipsum}{2021/09/20}{\setlipsum{auto-lang=false}}{}

%% Table related packages  

\usepackage{booktabs}% publication quality tables (https://ctan.org/pkg/booktabs)

\usepackage{array}% Additional options for column formats (https://ctan.org/pkg/array)

\usepackage{multirow}% multirow support

%\usepackage{dcolumn}% For alignment of numbers on the decimal place (https://ctan.org/pkg/dcolumn) 
%	\newcolumntype{d}[1]{D{.}{.}{#1}}% use with dcolumn package

%\usepackage{tabularx}% adjustable-width columns in tabular (https://ctan.org/pkg/tabularx)

%%%%%%%%%  Graphics path (to figure files)  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% Can set graphicspath to point to specific directories containing figures (the current directory is searched automatically)
%% For instance, to search a subdirectory of the current directory called "figures" and a parallel directory called "art", set:

% \graphicspath{ {figures/} {../art/} }% For details see: https://latexref.xyz/dev/latex2e.html#g_t_005cgraphicspath

%%%%%%%%%  Representative set-up for biblatex  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% Numerical citations of references
\usepackage[style=ext-numeric-comp,giveninits=true,maxbibnames=10,sorting=none]{biblatex}

%% IEEE style citations and references
% \usepackage[style=ieee,maxbibnames=10,sorting=none]{biblatex}% style=ext-numeric-comp,articlein=false,giveninits=true
%	 \DefineBibliographyStrings{english}{url= \textsc{url} ,  }% replaces the IEEE default "[Online]. Available" by "URL"

%% author-year style citations and references 
%% use \parencite, not \cite, when you want "(Author, year)"
%% The sample files are not set up to include parentheses.
% \usepackage[style=authoryear, maxbibnames=10]{biblatex} 

\addbibresource{_phd-thesis.bib}%% <== change to YOUR bib file <= CHANGE

%% to avoid split urls and stretched white space, you can set the bibliography ragged-right:
%\appto{\bibsetup}{\raggedright}

%% biblatex is very powerful, and you can customize most aspects the reference list and citations to suit your needs.
%%   documentation is here: https://ctan.org/pkg/biblatex
%%   cheat sheet is here:   https://tug.ctan.org/info/biblatex-cheatsheet/biblatex-cheatsheet.pdf

%% To ensure citations are set, run Latex --> biblatex/biber --> Latex again

%%%%%%%%%%  Option to use natbib   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%\RequirePackage[numbers,sort&compress]{natbib}

%%% add bibliography to table of contents
%\apptocmd{\bibliography}{\addcontentsline{toc}{chapter}{\protect\textbf{\bibname}}}{}{}

%%% You can use this to rename the bibliography section
%\renewcommand{\bibname}{References}

%%% To adjust space between bibliography items 
%\setlength\bibsep{4pt plus 1pt minus 1pt}
%   change 4pt to something else; don't drop last two lengths (they are stretchable "glue")

%%%%%%%%%%  Option for "double spacing" %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% Back in the typewriter era, double spaced lines were convenient for editing with a pencil. 
%% In typography, the separation between lines is called "leading", and it is usually set in 
%% proportion to the font size (i.e., when the font is loaded).  If you really feel the need 
%% to change the line separation, the most attractive results will be obtained by changing the
%% leading in proportion to the the current font size, rather than just doubling the space.

%% The setspace package provides a tool for changing line separation. Use these two commands here:
%
% \usepackage{setspace}%  documentation at https://ctan.org/pkg/setspace
% \setstretch{1.1}% you can choose some other value for the stretch of space between lines
%
%% Use one or more of the these commands *AFTER* the frontmatter
%
% \onehalfspacing
% \doublespacing
% \singlespacing  % will turn these effects off (you can use these anywhere in the document)

%% The best result is usually to stay with leading selected by the typographer who set up the font.

%%%%%%%%%%%  Metadata  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Most of the document metadata is created automatically. 
% The following items should be adjusted to match your work. <================= !!!!!!!!!!

\hypersetup{%
	pdfsubject={Programming techniques for Optical FPGAs},
	% Change this to briefly state topic of your thesis 
	% 
	pdfkeywords={David Sanchez-Jacome, Universitat Politecnica de Valencia, Programmable photonics, Software
			development, Field programmable photonic gate array},
	% Add keywords that will help search engines and libraries to find your work.
	% Includes the name[s] of the author[s] 
	% (If you used \DocumentMetadata at line 14, you can just put "\CopyrightAuthor," for the names.)
	%
	pdfurl={},
	% If you have a url for the thesis, put it here. Otherwise delete this.
	% (MIT Libraries will put your thesis in DSPACE with a persistent url after you submit it.)
	%	
	pdfcontactemail={david.sanchez@ipronics.com},
	% You can put a [permanent] email address into the metadata, if you like.
	% Otherwise delete this.
	%
	pdfauthortitle={Programming Methodologies and Applications on a Multipurpose Reconfigurable Photonic Integrated Platform},
	% If you have a title, you can include it here.
}

% Add custom institution field
\Institution{Universitat Politècnica de València}
%%%%%%%%%%%%%%  End preamble %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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