From 314dbcd8a524ff6ff78c1ed1ed57b3222ab53f2b Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 17:23:28 +0100 Subject: [PATCH 01/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 16:23:28 --- data/asafind/asafind.biotools.json | 76 +++++++++++++++--------------- 1 file changed, 38 insertions(+), 38 deletions(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index c706e9f6d11a3..1ab37ff581e0a 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -5,7 +5,7 @@ "biotoolsID": "asafind", "confidence_flag": "tool", "cost": "Free of charge", - "description": "ASAFind is a software that predicts the intracellular location of proteins in cells with four membrane-bound complex plastids of red algal origin. \nThese plastids evolved via eukaryote-eukaryote endosymbiosis and for example can be found in diatoms and cryptophytes. The plastids in these groups of algae are not only surrounded by additional membranes compared to primary plastids (as found in red-, green- and glaucophyte algae), but also by an additional compartment between the second and third membrane, which is referred to as the periplastidic compartment. The N-terminal part of the pre-protein of nucleus-encoded diatom plastid proteins is an ER-type signal peptide, which is followed by a transit peptide, and the cleavage site between these two targeting domains is characterized by a characteristic sequence motif (“ASA-FAP”), such targeting pre-sequences are commonly referred to as bipartite targeting signals.", + "description": "ASAFind is a software that predicts the intracellular location of proteins in cells with four membrane-bound complex plastids of red algal origin. \nThese plastids evolved via eukaryote-eukaryote endosymbiosis and for example can be found in diatoms and cryptophytes. ASAFind uses protein sequence data and external predictions of signal peptides (by the tools SignalP and TargetP), and predicts plastid proteins, and proteins that are targeted to the periplastidic compartment from these data; optionally, a graphical output can generated.", "documentation": [ { "type": [ @@ -40,12 +40,6 @@ "function": [ { "input": [ - { - "data": { - "term": "Feature table", - "uri": "http://edamontology.org/data_1270" - } - }, { "data": { "term": "Protein sequence record", @@ -57,33 +51,39 @@ "uri": "http://edamontology.org/format_1929" } ] + }, + { + "data": { + "term": "Feature table", + "uri": "http://edamontology.org/data_1270" + } } ], "operation": [ { - "term": "Protein cleavage site prediction", - "uri": "http://edamontology.org/operation_0422" + "term": "Subcellular localisation prediction", + "uri": "http://edamontology.org/operation_2489" }, { "term": "Sequence motif recognition", "uri": "http://edamontology.org/operation_0239" }, { - "term": "Subcellular localisation prediction", - "uri": "http://edamontology.org/operation_2489" + "term": "Protein cleavage site prediction", + "uri": "http://edamontology.org/operation_0422" } ], "output": [ { "data": { - "term": "Plot", - "uri": "http://edamontology.org/data_2884" + "term": "Protein features", + "uri": "http://edamontology.org/data_1277" } }, { "data": { - "term": "Protein features", - "uri": "http://edamontology.org/data_1277" + "term": "Plot", + "uri": "http://edamontology.org/data_2884" } } ] @@ -93,7 +93,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T16:16:18.187289Z", + "lastUpdate": "2025-12-15T16:22:48.655401Z", "license": "CC-BY-SA-4.0", "link": [ { @@ -107,11 +107,25 @@ "maturity": "Mature", "name": "ASAFind", "operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "owner": "martavohnoutova", "publication": [ + { + "doi": "10.1111/tpj.70138", + "metadata": { + "date": "2025-06-01T00:00:00Z", + "journal": "Plant Journal", + "title": "ASAFind 2.0: multi-class protein targeting prediction for diatoms and algae with complex plastids" + }, + "pmcid": "PMC12136025", + "pmid": "40464854", + "type": [ + "Primary" + ], + "version": "2.0" + }, { "doi": "10.1111/tpj.12734", "metadata": { @@ -127,25 +141,11 @@ "Other" ], "version": "1.0" - }, - { - "doi": "10.1111/tpj.70138", - "metadata": { - "date": "2025-06-01T00:00:00Z", - "journal": "Plant Journal", - "title": "ASAFind 2.0: multi-class protein targeting prediction for diatoms and algae with complex plastids" - }, - "pmcid": "PMC12136025", - "pmid": "40464854", - "type": [ - "Primary" - ], - "version": "2.0" } ], "toolType": [ - "Command-line tool", "Script", + "Command-line tool", "Web service" ], "topic": [ @@ -154,19 +154,19 @@ "uri": "http://edamontology.org/topic_2229" }, { - "term": "Genomics", - "uri": "http://edamontology.org/topic_0622" + "term": "Proteins", + "uri": "http://edamontology.org/topic_0078" }, { "term": "Plant biology", "uri": "http://edamontology.org/topic_0780" }, { - "term": "Proteins", - "uri": "http://edamontology.org/topic_0078" + "term": "Genomics", + "uri": "http://edamontology.org/topic_0622" } ], "version": [ "2.0" ] -} +} \ No newline at end of file From 73243411dfae757870d6eba6a7e4db5cbb422eae Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 16:24:02 +0000 Subject: [PATCH 02/13] reformat json with jq --- data/asafind/asafind.biotools.json | 72 +++++++++++++++--------------- 1 file changed, 36 insertions(+), 36 deletions(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index 1ab37ff581e0a..5c6b0c2bd71df 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -40,6 +40,12 @@ "function": [ { "input": [ + { + "data": { + "term": "Feature table", + "uri": "http://edamontology.org/data_1270" + } + }, { "data": { "term": "Protein sequence record", @@ -51,39 +57,33 @@ "uri": "http://edamontology.org/format_1929" } ] - }, - { - "data": { - "term": "Feature table", - "uri": "http://edamontology.org/data_1270" - } } ], "operation": [ { - "term": "Subcellular localisation prediction", - "uri": "http://edamontology.org/operation_2489" + "term": "Protein cleavage site prediction", + "uri": "http://edamontology.org/operation_0422" }, { "term": "Sequence motif recognition", "uri": "http://edamontology.org/operation_0239" }, { - "term": "Protein cleavage site prediction", - "uri": "http://edamontology.org/operation_0422" + "term": "Subcellular localisation prediction", + "uri": "http://edamontology.org/operation_2489" } ], "output": [ { "data": { - "term": "Protein features", - "uri": "http://edamontology.org/data_1277" + "term": "Plot", + "uri": "http://edamontology.org/data_2884" } }, { "data": { - "term": "Plot", - "uri": "http://edamontology.org/data_2884" + "term": "Protein features", + "uri": "http://edamontology.org/data_1277" } } ] @@ -107,25 +107,11 @@ "maturity": "Mature", "name": "ASAFind", "operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "owner": "martavohnoutova", "publication": [ - { - "doi": "10.1111/tpj.70138", - "metadata": { - "date": "2025-06-01T00:00:00Z", - "journal": "Plant Journal", - "title": "ASAFind 2.0: multi-class protein targeting prediction for diatoms and algae with complex plastids" - }, - "pmcid": "PMC12136025", - "pmid": "40464854", - "type": [ - "Primary" - ], - "version": "2.0" - }, { "doi": "10.1111/tpj.12734", "metadata": { @@ -141,11 +127,25 @@ "Other" ], "version": "1.0" + }, + { + "doi": "10.1111/tpj.70138", + "metadata": { + "date": "2025-06-01T00:00:00Z", + "journal": "Plant Journal", + "title": "ASAFind 2.0: multi-class protein targeting prediction for diatoms and algae with complex plastids" + }, + "pmcid": "PMC12136025", + "pmid": "40464854", + "type": [ + "Primary" + ], + "version": "2.0" } ], "toolType": [ - "Script", "Command-line tool", + "Script", "Web service" ], "topic": [ @@ -154,19 +154,19 @@ "uri": "http://edamontology.org/topic_2229" }, { - "term": "Proteins", - "uri": "http://edamontology.org/topic_0078" + "term": "Genomics", + "uri": "http://edamontology.org/topic_0622" }, { "term": "Plant biology", "uri": "http://edamontology.org/topic_0780" }, { - "term": "Genomics", - "uri": "http://edamontology.org/topic_0622" + "term": "Proteins", + "uri": "http://edamontology.org/topic_0078" } ], "version": [ "2.0" ] -} \ No newline at end of file +} From 48d13bd69f4af1e2fd06ef802c8b1ff70b4023aa Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 17:24:38 +0100 Subject: [PATCH 03/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 16:24:38 --- data/asafind/asafind.biotools.json | 78 +++++++++++++++--------------- 1 file changed, 40 insertions(+), 38 deletions(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index 5c6b0c2bd71df..0f5920e63cb13 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -29,7 +29,9 @@ "type": "group" }, "elixirCommunity": [ - "Plant Sciences" + "Plant Sciences", + "Marine Metagenomics", + "Microbial Biotechnology" ], "elixirNode": [ "Czech Republic" @@ -40,12 +42,6 @@ "function": [ { "input": [ - { - "data": { - "term": "Feature table", - "uri": "http://edamontology.org/data_1270" - } - }, { "data": { "term": "Protein sequence record", @@ -57,33 +53,39 @@ "uri": "http://edamontology.org/format_1929" } ] + }, + { + "data": { + "term": "Feature table", + "uri": "http://edamontology.org/data_1270" + } } ], "operation": [ { - "term": "Protein cleavage site prediction", - "uri": "http://edamontology.org/operation_0422" + "term": "Subcellular localisation prediction", + "uri": "http://edamontology.org/operation_2489" }, { "term": "Sequence motif recognition", "uri": "http://edamontology.org/operation_0239" }, { - "term": "Subcellular localisation prediction", - "uri": "http://edamontology.org/operation_2489" + "term": "Protein cleavage site prediction", + "uri": "http://edamontology.org/operation_0422" } ], "output": [ { "data": { - "term": "Plot", - "uri": "http://edamontology.org/data_2884" + "term": "Protein features", + "uri": "http://edamontology.org/data_1277" } }, { "data": { - "term": "Protein features", - "uri": "http://edamontology.org/data_1277" + "term": "Plot", + "uri": "http://edamontology.org/data_2884" } } ] @@ -93,7 +95,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T16:22:48.655401Z", + "lastUpdate": "2025-12-15T16:24:00.293873Z", "license": "CC-BY-SA-4.0", "link": [ { @@ -107,11 +109,25 @@ "maturity": "Mature", "name": "ASAFind", "operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "owner": "martavohnoutova", "publication": [ + { + "doi": "10.1111/tpj.70138", + "metadata": { + "date": "2025-06-01T00:00:00Z", + "journal": "Plant Journal", + "title": "ASAFind 2.0: multi-class protein targeting prediction for diatoms and algae with complex plastids" + }, + "pmcid": "PMC12136025", + "pmid": "40464854", + "type": [ + "Primary" + ], + "version": "2.0" + }, { "doi": "10.1111/tpj.12734", "metadata": { @@ -127,25 +143,11 @@ "Other" ], "version": "1.0" - }, - { - "doi": "10.1111/tpj.70138", - "metadata": { - "date": "2025-06-01T00:00:00Z", - "journal": "Plant Journal", - "title": "ASAFind 2.0: multi-class protein targeting prediction for diatoms and algae with complex plastids" - }, - "pmcid": "PMC12136025", - "pmid": "40464854", - "type": [ - "Primary" - ], - "version": "2.0" } ], "toolType": [ - "Command-line tool", "Script", + "Command-line tool", "Web service" ], "topic": [ @@ -154,19 +156,19 @@ "uri": "http://edamontology.org/topic_2229" }, { - "term": "Genomics", - "uri": "http://edamontology.org/topic_0622" + "term": "Proteins", + "uri": "http://edamontology.org/topic_0078" }, { "term": "Plant biology", "uri": "http://edamontology.org/topic_0780" }, { - "term": "Proteins", - "uri": "http://edamontology.org/topic_0078" + "term": "Genomics", + "uri": "http://edamontology.org/topic_0622" } ], "version": [ "2.0" ] -} +} \ No newline at end of file From 7b60bd0b59b6365767cfb93aab8575a9be46c382 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 17:25:43 +0100 Subject: [PATCH 04/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 16:25:43 --- data/asafind/asafind.biotools.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index 0f5920e63cb13..9383994cdc05d 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -95,7 +95,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T16:24:00.293873Z", + "lastUpdate": "2025-12-15T16:25:09.197967Z", "license": "CC-BY-SA-4.0", "link": [ { From 427b9e397a46edefca323d08afdced90fce8d2ac Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 17:29:14 +0100 Subject: [PATCH 05/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 16:29:14 --- data/asafind/asafind.biotools.json | 13 ++++++++++--- 1 file changed, 10 insertions(+), 3 deletions(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index 9383994cdc05d..0754b51afe3e5 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -16,9 +16,9 @@ ], "download": [ { - "note": "Repository for local installation", + "note": "Download page on web-service, links to repository", "type": "Downloads page", - "url": "https://github.com/ASAFind/ASAFind-2", + "url": "https://asafind.jcu.cz/download-page/", "version": "2.0" } ], @@ -95,7 +95,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T16:25:09.197967Z", + "lastUpdate": "2025-12-15T16:28:40.791948Z", "license": "CC-BY-SA-4.0", "link": [ { @@ -104,6 +104,13 @@ "Service" ], "url": "https://asafind.jcu.cz" + }, + { + "note": "Information and source code, for local installation or development", + "type": [ + "Repository" + ], + "url": "https://github.com/ASAFind/ASAFind-2" } ], "maturity": "Mature", From 86e12f75b2c407cfb209bf8c747ec339747e8cb2 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 17:30:51 +0100 Subject: [PATCH 06/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 16:30:50 --- data/asafind/asafind.biotools.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index 0754b51afe3e5..e1a9431e9225b 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -95,7 +95,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T16:28:40.791948Z", + "lastUpdate": "2025-12-15T16:30:12.368968Z", "license": "CC-BY-SA-4.0", "link": [ { @@ -128,6 +128,7 @@ "journal": "Plant Journal", "title": "ASAFind 2.0: multi-class protein targeting prediction for diatoms and algae with complex plastids" }, + "note": "Publication of the current version of ASAFind (2.0)", "pmcid": "PMC12136025", "pmid": "40464854", "type": [ From 1cbeba85e47bfad9b8f41928c2ceb58eb4d1989e Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 17:33:01 +0100 Subject: [PATCH 07/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 16:33:01 --- data/asafind/asafind.biotools.json | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index e1a9431e9225b..e1609594dc73f 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -95,7 +95,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T16:30:12.368968Z", + "lastUpdate": "2025-12-15T16:32:23.585648Z", "license": "CC-BY-SA-4.0", "link": [ { @@ -151,6 +151,14 @@ "Other" ], "version": "1.0" + }, + { + "doi": "10.48550/arXiv.2303.02509", + "note": "Benchmarking of the performance of the first version of ASAFind", + "type": [ + "Benchmarking study" + ], + "version": "1.0" } ], "toolType": [ From c5b15705ed3571cef62aa71e0a1ab54e8f82703c Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 17:34:17 +0100 Subject: [PATCH 08/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 16:34:17 --- data/asafind/asafind.biotools.json | 24 +++++++++++++++++------- 1 file changed, 17 insertions(+), 7 deletions(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index e1609594dc73f..49a0e1c7689e3 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -62,14 +62,14 @@ } ], "operation": [ - { - "term": "Subcellular localisation prediction", - "uri": "http://edamontology.org/operation_2489" - }, { "term": "Sequence motif recognition", "uri": "http://edamontology.org/operation_0239" }, + { + "term": "Subcellular localisation prediction", + "uri": "http://edamontology.org/operation_2489" + }, { "term": "Protein cleavage site prediction", "uri": "http://edamontology.org/operation_0422" @@ -95,7 +95,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T16:32:23.585648Z", + "lastUpdate": "2025-12-15T16:33:39.593605Z", "license": "CC-BY-SA-4.0", "link": [ { @@ -161,10 +161,20 @@ "version": "1.0" } ], + "relation": [ + { + "biotoolsID": "signalp", + "type": "uses" + }, + { + "biotoolsID": "targetp", + "type": "uses" + } + ], "toolType": [ "Script", - "Command-line tool", - "Web service" + "Web service", + "Command-line tool" ], "topic": [ { From 1e15b535542bdb211f2bb3f6e7e1f5c5756359ce Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 17:41:39 +0100 Subject: [PATCH 09/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 16:41:38 --- data/asafind/asafind.biotools.json | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index 49a0e1c7689e3..23c42b77e6cc6 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -62,14 +62,14 @@ } ], "operation": [ - { - "term": "Sequence motif recognition", - "uri": "http://edamontology.org/operation_0239" - }, { "term": "Subcellular localisation prediction", "uri": "http://edamontology.org/operation_2489" }, + { + "term": "Sequence motif recognition", + "uri": "http://edamontology.org/operation_0239" + }, { "term": "Protein cleavage site prediction", "uri": "http://edamontology.org/operation_0422" @@ -95,7 +95,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T16:33:39.593605Z", + "lastUpdate": "2025-12-15T16:41:02.090126Z", "license": "CC-BY-SA-4.0", "link": [ { @@ -173,8 +173,8 @@ ], "toolType": [ "Script", - "Web service", - "Command-line tool" + "Command-line tool", + "Web service" ], "topic": [ { From 6e5f285aa3354d04385b6a2ce499833250445f89 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 18:01:23 +0100 Subject: [PATCH 10/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 17:01:22 --- data/asafind/asafind.biotools.json | 40 +++++++++++++++++++++++++----- 1 file changed, 34 insertions(+), 6 deletions(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index 23c42b77e6cc6..ecdb885c473bc 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -5,6 +5,34 @@ "biotoolsID": "asafind", "confidence_flag": "tool", "cost": "Free of charge", + "credit": [ + { + "email": "mvohnoutova@jcu.cz", + "name": "Marta Vohnoutov\u00e1", + "orcidid": "https://orcid.org/0000-0002-8915-8626", + "typeEntity": "Person", + "typeRole": [ + "Contributor", + "Developer", + "Maintainer", + "Support" + ], + "url": "https://www.jcu.cz/cz/univerzita/lide/clovek?identita=Vohnoutova_Marta_61699" + }, + { + "email": "agruber@prf.jcu.cz", + "name": "Ansgar Gruber", + "orcidid": "https://orcid.org/0000-0002-5876-4391", + "typeEntity": "Person", + "typeRole": [ + "Primary contact", + "Developer", + "Documentor", + "Support" + ], + "url": "https://www.jcu.cz/cz/univerzita/lide/clovek?identita=Gruber_Ansgar_118401" + } + ], "description": "ASAFind is a software that predicts the intracellular location of proteins in cells with four membrane-bound complex plastids of red algal origin. \nThese plastids evolved via eukaryote-eukaryote endosymbiosis and for example can be found in diatoms and cryptophytes. ASAFind uses protein sequence data and external predictions of signal peptides (by the tools SignalP and TargetP), and predicts plastid proteins, and proteins that are targeted to the periplastidic compartment from these data; optionally, a graphical output can generated.", "documentation": [ { @@ -62,10 +90,6 @@ } ], "operation": [ - { - "term": "Subcellular localisation prediction", - "uri": "http://edamontology.org/operation_2489" - }, { "term": "Sequence motif recognition", "uri": "http://edamontology.org/operation_0239" @@ -73,6 +97,10 @@ { "term": "Protein cleavage site prediction", "uri": "http://edamontology.org/operation_0422" + }, + { + "term": "Subcellular localisation prediction", + "uri": "http://edamontology.org/operation_2489" } ], "output": [ @@ -95,7 +123,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T16:41:02.090126Z", + "lastUpdate": "2025-12-15T17:00:46.504493Z", "license": "CC-BY-SA-4.0", "link": [ { @@ -172,8 +200,8 @@ } ], "toolType": [ - "Script", "Command-line tool", + "Script", "Web service" ], "topic": [ From d4da82f5b8d46e6a1319851f032926e752be3d5f Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 18:31:29 +0100 Subject: [PATCH 11/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 17:31:29 --- data/asafind/asafind.biotools.json | 20 +++++++++----------- 1 file changed, 9 insertions(+), 11 deletions(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index ecdb885c473bc..00639c9a79d39 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -14,8 +14,7 @@ "typeRole": [ "Contributor", "Developer", - "Maintainer", - "Support" + "Maintainer" ], "url": "https://www.jcu.cz/cz/univerzita/lide/clovek?identita=Vohnoutova_Marta_61699" }, @@ -27,8 +26,7 @@ "typeRole": [ "Primary contact", "Developer", - "Documentor", - "Support" + "Documentor" ], "url": "https://www.jcu.cz/cz/univerzita/lide/clovek?identita=Gruber_Ansgar_118401" } @@ -94,13 +92,13 @@ "term": "Sequence motif recognition", "uri": "http://edamontology.org/operation_0239" }, - { - "term": "Protein cleavage site prediction", - "uri": "http://edamontology.org/operation_0422" - }, { "term": "Subcellular localisation prediction", "uri": "http://edamontology.org/operation_2489" + }, + { + "term": "Protein cleavage site prediction", + "uri": "http://edamontology.org/operation_0422" } ], "output": [ @@ -123,7 +121,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T17:00:46.504493Z", + "lastUpdate": "2025-12-15T17:30:50.211469Z", "license": "CC-BY-SA-4.0", "link": [ { @@ -200,9 +198,9 @@ } ], "toolType": [ - "Command-line tool", "Script", - "Web service" + "Web service", + "Command-line tool" ], "topic": [ { From 74d24364e8dd4a7ec9d29cc677fd6f0a45a95607 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 18:33:06 +0100 Subject: [PATCH 12/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 17:33:06 --- data/asafind/asafind.biotools.json | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index 00639c9a79d39..69bc80d0fa00c 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -3,6 +3,10 @@ "additionDate": "2025-12-15T14:17:14.627791Z", "biotoolsCURIE": "biotools:asafind", "biotoolsID": "asafind", + "collectionID": [ + "ELIXIR-CZ", + "Czech Republic" + ], "confidence_flag": "tool", "cost": "Free of charge", "credit": [ @@ -121,7 +125,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T17:30:50.211469Z", + "lastUpdate": "2025-12-15T17:32:27.477957Z", "license": "CC-BY-SA-4.0", "link": [ { From 55a248e7f65f070e401111b916589b4cd448857a Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 18:37:18 +0100 Subject: [PATCH 13/13] UPDATE tool with id: asafind by bio.tools user: agruber at UTC time: 2025-12-15 17:37:17 --- data/asafind/asafind.biotools.json | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/data/asafind/asafind.biotools.json b/data/asafind/asafind.biotools.json index 69bc80d0fa00c..eee37f9f1a725 100644 --- a/data/asafind/asafind.biotools.json +++ b/data/asafind/asafind.biotools.json @@ -92,14 +92,14 @@ } ], "operation": [ - { - "term": "Sequence motif recognition", - "uri": "http://edamontology.org/operation_0239" - }, { "term": "Subcellular localisation prediction", "uri": "http://edamontology.org/operation_2489" }, + { + "term": "Sequence motif recognition", + "uri": "http://edamontology.org/operation_0239" + }, { "term": "Protein cleavage site prediction", "uri": "http://edamontology.org/operation_0422" @@ -125,7 +125,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T17:32:27.477957Z", + "lastUpdate": "2025-12-15T17:36:43.189214Z", "license": "CC-BY-SA-4.0", "link": [ { @@ -203,8 +203,8 @@ ], "toolType": [ "Script", - "Web service", - "Command-line tool" + "Command-line tool", + "Web service" ], "topic": [ {