From e7460310c1d067bb6a765f98adea345a8a0a52ce Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 12:47:54 +0100 Subject: [PATCH 01/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 11:47:54 --- .../breast_dense_tissue_segmentation.biotools.json | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 2e2ba1b1c08e5..d4d1b8f9f3c84 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -19,11 +19,11 @@ ] } ], - "homepage": "https://pubmed.ncbi.nlm.nih.gov/36010173/", + "homepage": "https://harbor.eucaim.cancerimage.eu/harbor/projects/4/repositories/image_batch_iti-breast", "language": [ "Python" ], - "lastUpdate": "2025-10-20T10:26:42.806388Z", + "lastUpdate": "2025-11-11T11:47:15.597467Z", "license": "Proprietary", "maturity": "Mature", "name": "Breast Dense Tissue Segmentation", @@ -57,4 +57,4 @@ "version": [ "v1.0.6" ] -} +} \ No newline at end of file From 63beba7026ae953ef56ad2dc37c9446589a37804 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 11:48:42 +0000 Subject: [PATCH 02/21] reformat json with jq --- .../breast_dense_tissue_segmentation.biotools.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index d4d1b8f9f3c84..71cf31ecbb4cc 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -57,4 +57,4 @@ "version": [ "v1.0.6" ] -} \ No newline at end of file +} From 04db6cefa7f3d5f3f1833d3d0cfbf3cd38e54736 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 13:10:34 +0100 Subject: [PATCH 03/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 12:10:34 --- ...st_dense_tissue_segmentation.biotools.json | 22 +++++++++++++++++-- 1 file changed, 20 insertions(+), 2 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 71cf31ecbb4cc..8dff65ab4d4b0 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -11,11 +11,29 @@ }, "function": [ { + "cmd": "jobman submit -i mammography-density-segmenter -r small-gpu -- -p\ninput_dcm_path -o output_directory", + "input": [ + { + "data": { + "term": "Image", + "uri": "http://edamontology.org/data_2968" + } + } + ], + "note": "* input_dcm_path: input path to the 2D DICOM image (FFDM)\n\n* output_directory: output directory to store the results", "operation": [ { "term": "Image annotation", "uri": "http://edamontology.org/operation_3553" } + ], + "output": [ + { + "data": { + "term": "Image", + "uri": "http://edamontology.org/data_2968" + } + } ] } ], @@ -23,7 +41,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T11:47:15.597467Z", + "lastUpdate": "2025-11-11T12:09:56.887730Z", "license": "Proprietary", "maturity": "Mature", "name": "Breast Dense Tissue Segmentation", @@ -57,4 +75,4 @@ "version": [ "v1.0.6" ] -} +} \ No newline at end of file From c74601ea99f8a9f129055a2d6fc73896924b069f Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 12:11:16 +0000 Subject: [PATCH 04/21] reformat json with jq --- .../breast_dense_tissue_segmentation.biotools.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 8dff65ab4d4b0..cac6c855e63a0 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -75,4 +75,4 @@ "version": [ "v1.0.6" ] -} \ No newline at end of file +} From bb43d6ad949be13b0dea35f0780f5db04a891901 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 13:16:00 +0100 Subject: [PATCH 05/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 12:16:00 --- .../breast_dense_tissue_segmentation.biotools.json | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index cac6c855e63a0..8a1f082b66a10 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -1,4 +1,5 @@ { + "accessibility": "Restricted access", "additionDate": "2025-05-22T12:06:46.866961Z", "biotoolsCURIE": "biotools:breast_dense_tissue_segmentation", "biotoolsID": "breast_dense_tissue_segmentation", @@ -41,10 +42,13 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T12:09:56.887730Z", + "lastUpdate": "2025-11-11T12:15:26.371242Z", "license": "Proprietary", "maturity": "Mature", "name": "Breast Dense Tissue Segmentation", + "operatingSystem": [ + "Linux" + ], "owner": "dsilveira", "publication": [ { @@ -75,4 +79,4 @@ "version": [ "v1.0.6" ] -} +} \ No newline at end of file From d9c84a93a33a2a19f6474aced292807458e92904 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 12:16:38 +0000 Subject: [PATCH 06/21] reformat json with jq --- .../breast_dense_tissue_segmentation.biotools.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 8a1f082b66a10..76016e698464c 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -79,4 +79,4 @@ "version": [ "v1.0.6" ] -} \ No newline at end of file +} From 3b90f987cb0a11e1e771645b15f73be9b6d0a2cc Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 13:16:51 +0100 Subject: [PATCH 07/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 12:16:51 --- .../breast_dense_tissue_segmentation.biotools.json | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 76016e698464c..cc98e57aac897 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -42,11 +42,13 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T12:15:26.371242Z", + "lastUpdate": "2025-11-11T12:16:17.356765Z", "license": "Proprietary", "maturity": "Mature", "name": "Breast Dense Tissue Segmentation", "operatingSystem": [ + "Windows", + "Mac", "Linux" ], "owner": "dsilveira", @@ -79,4 +81,4 @@ "version": [ "v1.0.6" ] -} +} \ No newline at end of file From a13561be7cd87d6e0d421d0557014089d268bba0 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 12:17:30 +0000 Subject: [PATCH 08/21] reformat json with jq --- .../breast_dense_tissue_segmentation.biotools.json | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index cc98e57aac897..1a77283f425b6 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -47,9 +47,9 @@ "maturity": "Mature", "name": "Breast Dense Tissue Segmentation", "operatingSystem": [ - "Windows", + "Linux", "Mac", - "Linux" + "Windows" ], "owner": "dsilveira", "publication": [ @@ -81,4 +81,4 @@ "version": [ "v1.0.6" ] -} \ No newline at end of file +} From 26089c6a0880ce235c203b63b6548d99e01548cf Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 13:19:57 +0100 Subject: [PATCH 09/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 12:19:56 --- ...east_dense_tissue_segmentation.biotools.json | 17 +++++++++++++---- 1 file changed, 13 insertions(+), 4 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 1a77283f425b6..3b4ebd62e51a5 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -42,14 +42,23 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T12:16:17.356765Z", + "lastUpdate": "2025-11-11T12:19:22.382310Z", "license": "Proprietary", + "link": [ + { + "note": "Scientific paper", + "type": [ + "Other" + ], + "url": "https://pubmed.ncbi.nlm.nih.gov/36010173/" + } + ], "maturity": "Mature", "name": "Breast Dense Tissue Segmentation", "operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "owner": "dsilveira", "publication": [ @@ -81,4 +90,4 @@ "version": [ "v1.0.6" ] -} +} \ No newline at end of file From 06ddff5474683585d4cdf25b3744968390e46dd4 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 12:20:37 +0000 Subject: [PATCH 10/21] reformat json with jq --- .../breast_dense_tissue_segmentation.biotools.json | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 3b4ebd62e51a5..9e41f262cfba5 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -56,9 +56,9 @@ "maturity": "Mature", "name": "Breast Dense Tissue Segmentation", "operatingSystem": [ - "Windows", + "Linux", "Mac", - "Linux" + "Windows" ], "owner": "dsilveira", "publication": [ @@ -90,4 +90,4 @@ "version": [ "v1.0.6" ] -} \ No newline at end of file +} From 0970d3b7fa225b488ad0f3cad688b9db6d5215e7 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 13:22:08 +0100 Subject: [PATCH 11/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 12:22:07 --- .../breast_dense_tissue_segmentation.biotools.json | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 9e41f262cfba5..7ed4f7fa4597f 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -42,7 +42,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T12:19:22.382310Z", + "lastUpdate": "2025-11-11T12:21:32.758535Z", "license": "Proprietary", "link": [ { @@ -51,14 +51,20 @@ "Other" ], "url": "https://pubmed.ncbi.nlm.nih.gov/36010173/" + }, + { + "type": [ + "Repository" + ], + "url": "https://harbor.eucaim.cancerimage.eu/harbor/projects/4/repositories/image_batch_iti-breast" } ], "maturity": "Mature", "name": "Breast Dense Tissue Segmentation", "operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "owner": "dsilveira", "publication": [ @@ -90,4 +96,4 @@ "version": [ "v1.0.6" ] -} +} \ No newline at end of file From 0903249fdd77c0e0c0d6da211d416c6d6dbd8aaa Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 13:34:04 +0100 Subject: [PATCH 12/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 12:34:03 --- .../breast_dense_tissue_segmentation.biotools.json | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 7ed4f7fa4597f..2d5d62b64c876 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -7,6 +7,14 @@ "EUCAIM" ], "description": "The tool takes a digital mammogram and performs an automatic segmentation of the breast area and the dense tissue. After the mammogram segmentation, the tool returns a DICOM-SEG image with both the dense tissue and the breast tissue mask combined.", + "documentation": [ + { + "type": [ + "Quick start guide" + ], + "url": "https://docs.google.com/document/d/1LmV-dm7cjf4RO6oCuRn9oRFlFldqB_vXha1Kcf2lXz8/edit?usp=drive_link" + } + ], "editPermission": { "type": "private" }, @@ -42,7 +50,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T12:21:32.758535Z", + "lastUpdate": "2025-11-11T12:33:26.413082Z", "license": "Proprietary", "link": [ { From b265b6e348e6fc26d2553943b05b041344e61bef Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 13:41:50 +0100 Subject: [PATCH 13/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 12:41:49 --- ...st_dense_tissue_segmentation.biotools.json | 25 +++++++++++++------ 1 file changed, 18 insertions(+), 7 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 2d5d62b64c876..00d5f0b0cfb42 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -6,6 +6,23 @@ "collectionID": [ "EUCAIM" ], + "credit": [ + { + "email": "aarias@iti.es", + "name": "Ana Mar\u00eda Arias Beltr\u00e1n", + "typeEntity": "Person", + "typeRole": [ + "Primary contact" + ] + }, + { + "name": "Instituto Tecnol\u00f3gico de Inform\u00e1tica (ITI)", + "typeEntity": "Institute", + "typeRole": [ + "Provider" + ] + } + ], "description": "The tool takes a digital mammogram and performs an automatic segmentation of the breast area and the dense tissue. After the mammogram segmentation, the tool returns a DICOM-SEG image with both the dense tissue and the breast tissue mask combined.", "documentation": [ { @@ -50,7 +67,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T12:33:26.413082Z", + "lastUpdate": "2025-11-11T12:40:22.277912Z", "license": "Proprietary", "link": [ { @@ -78,12 +95,6 @@ "publication": [ { "doi": "10.3390/diagnostics12081822", - "metadata": { - "citationCount": 7, - "date": "2022-08-01T00:00:00Z", - "journal": "Diagnostics", - "title": "Breast Dense Tissue Segmentation with Noisy Labels: A Hybrid Threshold-Based and Mask-Based Approach" - }, "pmcid": "PMC9406546", "pmid": "36010173" } From 09270a52f9b31677ab9765f9d16fd3fde9c50513 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 13:55:42 +0100 Subject: [PATCH 14/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 12:55:41 --- .../breast_dense_tissue_segmentation.biotools.json | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 00d5f0b0cfb42..9fd5d990828e2 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -46,7 +46,7 @@ } } ], - "note": "* input_dcm_path: input path to the 2D DICOM image (FFDM)\n\n* output_directory: output directory to store the results", + "note": "input_dcm_path: input path to the 2D DICOM image (FFDM); output_directory: output directory to store the results", "operation": [ { "term": "Image annotation", @@ -67,7 +67,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T12:40:22.277912Z", + "lastUpdate": "2025-11-11T12:55:06.535748Z", "license": "Proprietary", "link": [ { @@ -95,6 +95,12 @@ "publication": [ { "doi": "10.3390/diagnostics12081822", + "metadata": { + "citationCount": 7, + "date": "2022-08-01T00:00:00Z", + "journal": "Diagnostics", + "title": "Breast Dense Tissue Segmentation with Noisy Labels: A Hybrid Threshold-Based and Mask-Based Approach" + }, "pmcid": "PMC9406546", "pmid": "36010173" } From 3aff91b4f4799580c3ce3970573c57f31d15c188 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 13:59:43 +0100 Subject: [PATCH 15/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 12:59:43 --- ...st_dense_tissue_segmentation.biotools.json | 22 ++++++++++++++----- 1 file changed, 17 insertions(+), 5 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 9fd5d990828e2..6e0bedd169f43 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -43,7 +43,13 @@ "data": { "term": "Image", "uri": "http://edamontology.org/data_2968" - } + }, + "format": [ + { + "term": "DICOM format", + "uri": "http://edamontology.org/format_3548" + } + ] } ], "note": "input_dcm_path: input path to the 2D DICOM image (FFDM); output_directory: output directory to store the results", @@ -58,7 +64,13 @@ "data": { "term": "Image", "uri": "http://edamontology.org/data_2968" - } + }, + "format": [ + { + "term": "DICOM format", + "uri": "http://edamontology.org/format_3548" + } + ] } ] } @@ -67,7 +79,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T12:55:06.535748Z", + "lastUpdate": "2025-11-11T12:59:09.910038Z", "license": "Proprietary", "link": [ { @@ -88,8 +100,8 @@ "name": "Breast Dense Tissue Segmentation", "operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "owner": "dsilveira", "publication": [ From fefe48e73ed14a7cdd4be6d1a21b2f6ebe0096a4 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Tue, 11 Nov 2025 14:04:59 +0100 Subject: [PATCH 16/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-11 13:04:59 --- .../breast_dense_tissue_segmentation.biotools.json | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 6e0bedd169f43..f6b82a1b82927 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -79,7 +79,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T12:59:09.910038Z", + "lastUpdate": "2025-11-11T13:04:24.657078Z", "license": "Proprietary", "link": [ { @@ -100,8 +100,8 @@ "name": "Breast Dense Tissue Segmentation", "operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "owner": "dsilveira", "publication": [ From 278651ddb8f8e63d43e4a71259bf73f57a0a22e3 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Wed, 12 Nov 2025 13:23:05 +0100 Subject: [PATCH 17/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-12 12:23:04 --- .../breast_dense_tissue_segmentation.biotools.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index f6b82a1b82927..de1a9511c50f3 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -79,7 +79,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-11T13:04:24.657078Z", + "lastUpdate": "2025-11-12T12:22:26.831698Z", "license": "Proprietary", "link": [ { @@ -90,6 +90,7 @@ "url": "https://pubmed.ncbi.nlm.nih.gov/36010173/" }, { + "note": "Harbor repository with the tool's Docker images", "type": [ "Repository" ], From 7623c9c3f4348c19589f29c8bd80b2cecbb65da4 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Wed, 12 Nov 2025 13:32:01 +0100 Subject: [PATCH 18/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-12 12:32:01 --- .../breast_dense_tissue_segmentation.biotools.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index de1a9511c50f3..557925d5df947 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -79,7 +79,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-12T12:22:26.831698Z", + "lastUpdate": "2025-11-12T12:31:26.186752Z", "license": "Proprietary", "link": [ { From 2be72baf0f2564c9dd599ffcba00e640bb8b6199 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Wed, 12 Nov 2025 13:33:41 +0100 Subject: [PATCH 19/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-11-12 12:33:41 --- .../breast_dense_tissue_segmentation.biotools.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 557925d5df947..8434489d9a19d 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -29,7 +29,7 @@ "type": [ "Quick start guide" ], - "url": "https://docs.google.com/document/d/1LmV-dm7cjf4RO6oCuRn9oRFlFldqB_vXha1Kcf2lXz8/edit?usp=drive_link" + "url": "https://docs.google.com/document/d/1LmV-dm7cjf4RO6oCuRn9oRFlFldqB_vXha1Kcf2lXz8" } ], "editPermission": { @@ -79,7 +79,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-12T12:31:26.186752Z", + "lastUpdate": "2025-11-12T12:33:02.024844Z", "license": "Proprietary", "link": [ { From 64f9a5f15b93e6c1b659c06423184a5c3640c502 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 15 Dec 2025 13:10:01 +0100 Subject: [PATCH 20/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-12-15 12:10:01 --- ...st_dense_tissue_segmentation.biotools.json | 22 +++++++++++++++---- 1 file changed, 18 insertions(+), 4 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 8434489d9a19d..58c56327f7b7a 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -29,7 +29,21 @@ "type": [ "Quick start guide" ], - "url": "https://docs.google.com/document/d/1LmV-dm7cjf4RO6oCuRn9oRFlFldqB_vXha1Kcf2lXz8" + "url": "https://drive.eucaim.cancerimage.eu/s/agktHMkYfy5pHes" + }, + { + "note": "Tool License Agreement in DOCX format", + "type": [ + "Terms of use" + ], + "url": "https://drive.eucaim.cancerimage.eu/s/gPcqYKakCDSXGjN" + }, + { + "note": "Tool License Summary in TXT format", + "type": [ + "Terms of use" + ], + "url": "https://drive.eucaim.cancerimage.eu/s/7ZPfQqsJ6YRjgpe" } ], "editPermission": { @@ -79,7 +93,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-11-12T12:33:02.024844Z", + "lastUpdate": "2025-12-15T12:09:26.486490Z", "license": "Proprietary", "link": [ { @@ -100,9 +114,9 @@ "maturity": "Mature", "name": "Breast Dense Tissue Segmentation", "operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "owner": "dsilveira", "publication": [ From 5e7d97028b959c880bc205767d4c6183a35b3273 Mon Sep 17 00:00:00 2001 From: biotools-bot Date: Mon, 22 Dec 2025 15:35:12 +0100 Subject: [PATCH 21/21] UPDATE tool with id: breast_dense_tissue_segmentation by bio.tools user: dsilveira at UTC time: 2025-12-22 14:35:11 --- .../breast_dense_tissue_segmentation.biotools.json | 13 ++++++++++--- 1 file changed, 10 insertions(+), 3 deletions(-) diff --git a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json index 58c56327f7b7a..82ee4e35bfd51 100644 --- a/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json +++ b/data/breast_dense_tissue_segmentation/breast_dense_tissue_segmentation.biotools.json @@ -44,6 +44,13 @@ "Terms of use" ], "url": "https://drive.eucaim.cancerimage.eu/s/7ZPfQqsJ6YRjgpe" + }, + { + "note": "Video demonstration of how to use the tool", + "type": [ + "Training material" + ], + "url": "https://youtu.be/_X68b2wjrj0?si=zCH_NRR_V9e8NUwh" } ], "editPermission": { @@ -93,7 +100,7 @@ "language": [ "Python" ], - "lastUpdate": "2025-12-15T12:09:26.486490Z", + "lastUpdate": "2025-12-22T14:34:39.139482Z", "license": "Proprietary", "link": [ { @@ -115,8 +122,8 @@ "name": "Breast Dense Tissue Segmentation", "operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "owner": "dsilveira", "publication": [