pyproject.toml

[tool.poetry]
name = "nedrexdb"
version = "0.3.0"
description = ""
authors = ["james-skelton <james.skelton@newcastle.ac.uk>","andreas-maier <andreas.maier-1@uni-hamburg.de>"]

[tool.poetry.dependencies]
python =  ">=3.11,<3.14"
pymongo = "^4.6.3"
mongoengine = "^0.28.2"
docker = "^7.1"
more-itertools = "^8.8.0"
loguru = "^0.6.0"
requests = "^2.32.4"
beautifulsoup4 = "^4.9.3"
biopython = "^1.81"
xmljson = "^0.2.1"
SQLAlchemy = "^1.4.23"
psycopg2-binary = "^2.9.1"
pydantic = "2.7.4"
tqdm = "^4.66.1"
pandas = "^2.3"
obonet = "^1.1.1"
lxml = "^4.6.3"
rdflib = "^6.0.2"
black = "^26.3.1"
mypy = "^0.910"
flake8 = "^4.0.1"
py = "^1.11.0"
idna = "^3.7"
rdkit = "^2024.3.3"
numpy = "^2.3"
langchain-neo4j = "^0.8.0"
h11 = "^0.16.0"
pillow = "^12.1.1"
urllib3 = "^2.6"
aiohttp = "^3.12.14"
openpyxl = "^3.1.2"
pyspark = "^3.5.6"
openai = "^1.102.0"
pypdf = "^6.8.0"
langgraph = "^1.0.10"

[tool.poetry.dev-dependencies]
pytest = "^9.0.3"
pre-commit = "^2.14.1"

[build-system]
requires = ["poetry-core>=2.1.0"]
build-backend = "poetry.core.masonry.api"