failing build using R 4.0.3 on Ubuntu 20.04 #21
Description
Many thanks for your work on this project. Please find the log below when trying to build the package using R 4.0.3 on Ubuntu 20.04. Let me know if any additional information is required
WARNING: ignoring environment value of R_HOME
* checking for file ‘/home/tverbeke/git/RcppOctave/DESCRIPTION’ ... OK
* preparing ‘RcppOctave’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to process help pages
-----------------------------------
* installing *source* package ‘RcppOctave’ ...
** using staged installation
checking R architecture... none
checking for R... /opt/architect/plugins/eu.openanalytics.architect.r.server.gtk.linux/R/bin/R
checking for Rscript... /opt/architect/plugins/eu.openanalytics.architect.r.server.gtk.linux/R/bin/Rscript
checking whether loading Rprofile writes to stdout... no
checking R version... R version 4.0.3 (2020-10-10)
checking R platform... x86_64-pc-linux-gnu
checking R CC... gcc
checking R CFLAGS... -g -O2
checking R CPPFLAGS... -I/usr/local/include
checking R CXXFLAGS... -g -O2
checking for gcc... /usr/bin/gcc
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for g++... /usr/bin/g++
configure: Original R_LDFLAGS: -Wl,--export-dynamic -fopenmp -L/usr/local/lib -L/opt/architect/plugins/eu.openanalytics.architect.r.server.gtk.linux/R/lib -lR -lpcre2-8 -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n
configure: Original R_CPPFLAGS: -I/opt/architect/plugins/eu.openanalytics.architect.r.server.gtk.linux/R/include
checking whether R is a shared library... yes
checking type of Operating System... Linux
checking whether OS is Mac OS (Darwin)... no
configure: Using mkoctfile with R_LDFLAGS: -Wl,--export-dynamic -L/usr/local/lib -L/opt/architect/plugins/eu.openanalytics.architect.r.server.gtk.linux/R/lib -lR -lpcre2-8 -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n
configure: Using mkoctfile with R_CPPFLAGS: -I/opt/architect/plugins/eu.openanalytics.architect.r.server.gtk.linux/R/include
checking Octave custom binary path specification... none
configure: using Octave binary path from $PATH
checking for octave-config... /usr/bin/octave-config
checking for mkoctfile... /usr/bin/mkoctfile
checking Octave Octave bin directory... /usr/bin
checking Octave Octave libraries directory... /usr/lib/x86_64-linux-gnu/octave/5.2.0
checking for octave... /usr/bin/octave
checking PATH changes... none
checking Octave module make target... all
checking mkoctfile command... /usr/bin/mkoctfile
checking Octave cpp flags... -Wdate-time -D_FORTIFY_SOURCE=2
checking Octave include flags... -I/usr/include/octave-5.2.0/octave/.. -I/usr/include/octave-5.2.0/octave
checking Octave -L flags... warning: LFLAGS is deprecated and will be removed in a future version of Octave, use LDFLAGS instead
-L/usr/lib/x86_64-linux-gnu
checking Octave libraries... -loctinterp -loctave
checking Octave C compiler... gcc
checking Octave Fortran compiler... gfortran
checking Octave platform... x86_64-pc-linux-gnu
checking Octave API version... api-v53
checking Octave version... 5.2.0
checking whether to infer output names for Octave function (>= 3.4.3)... yes
configure: Using Octave LDFLAGS: -L/usr/lib/x86_64-linux-gnu -loctinterp -loctave
configure: Using Octave CPPFLAGS: -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/octave-5.2.0/octave/.. -I/usr/include/octave-5.2.0/octave -DOCT_POST_3_4_0=1
checking RcppOctave Octave module directory... /tmp/RtmpHjp7hc/Rinst7776743922341/00LOCK-RcppOctave/00new/RcppOctave/modules
configure: creating ./config.status
config.status: creating R/config-vars.R
configure: creating ./config.status
config.status: creating R/config-vars.R
config.status: creating src/Makevars
configure: creating ./config.status
config.status: creating R/config-vars.R
config.status: creating src/Makevars
config.status: creating src/modules/Makefile
** libs
# Making Octave module [r_arch: all]
make[1]: Entering directory '/tmp/RtmpHjp7hc/Rbuild777672e578c36/RcppOctave/src/modules'
*** Building octave module: utils.oct
/usr/bin/mkoctfile -v utils.cc
g++ -std=gnu++11 -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-5.2.0/octave/.. -I/usr/include/octave-5.2.0/octave -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/octave-rvRilm/octave-5.2.0=. -fstack-protector-strong -Wformat -Werror=format-security utils.cc -o /tmp/oct-e5EBmh.o
In file included from ../compatibility.h:9,
from utils.cc:21:
../swig_octave_version.h:10:10: fatal error: octave/config.h: No such file or directory
10 | #include <octave/config.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:47: utils.oct] Error 1
make[1]: Leaving directory '/tmp/RtmpHjp7hc/Rbuild777672e578c36/RcppOctave/src/modules'
make: *** [Makevars:33: OctaveModule] Error 2
ERROR: compilation failed for package ‘RcppOctave’
* removing ‘/tmp/RtmpHjp7hc/Rinst7776743922341/RcppOctave’
-----------------------------------
ERROR: package installation failed