I would like to use your tool to identify the species of 1000 bacterial genomes. Before doing this, however, I wanted to get the tutorial up and running. Unfortunately, after installation of the required software, when I get to the makekmerdb command I get the following Error:
perl GSMer.pl -m makekmerdb -f1 k12.fa
ERROR - must have at least two databases (you gave 0)!
merylStreamReader()-- ERROR: ./merdb_strain/f2n2.k18.mcidx is not a merylStream index file!
merylStreamReader()-- ERROR: ./merdb_strain/f2n2.k18.mcdat is not a merylStream data file!
I would like to use your tool to identify the species of 1000 bacterial genomes. Before doing this, however, I wanted to get the tutorial up and running. Unfortunately, after installation of the required software, when I get to the makekmerdb command I get the following Error:
perl GSMer.pl -m makekmerdb -f1 k12.fa
ERROR - must have at least two databases (you gave 0)!
merylStreamReader()-- ERROR: ./merdb_strain/f2n2.k18.mcidx is not a merylStream index file!
merylStreamReader()-- ERROR: ./merdb_strain/f2n2.k18.mcdat is not a merylStream data file!