From cca296faf3165932a031af8080c574a5d5242c6e Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 23 Jun 2025 17:54:19 +0000
Subject: [PATCH 1/9] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.11.12 → v0.12.0](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.12...v0.12.0)
- [github.com/crate-ci/typos: v1.32.0 → v1](https://github.com/crate-ci/typos/compare/v1.32.0...v1)
---
 .pre-commit-config.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index b9ccf5ca..95550a1a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -28,7 +28,7 @@ repos:
     -   id: python-no-log-warn
     -   id: text-unicode-replacement-char
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.11.12
+    rev: v0.12.0
     hooks:
       - id: ruff-format
       - id: ruff
@@ -58,7 +58,7 @@ repos:
     -   id: nbstripout
         exclude: (docs)
 -   repo: https://github.com/crate-ci/typos
-    rev: v1.32.0
+    rev: v1
     hooks:
     -   id: typos
         exclude: (\.ipynb)

From 71233d660a1773ed2210f6b1b00d82ebecd11b0f Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 23 Jun 2025 17:54:59 +0000
Subject: [PATCH 2/9] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 src/_pytask/cache.py           | 2 +-
 src/_pytask/mark/expression.py | 3 ++-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/src/_pytask/cache.py b/src/_pytask/cache.py
index a7a1f3c7..b8e280a1 100644
--- a/src/_pytask/cache.py
+++ b/src/_pytask/cache.py
@@ -72,7 +72,7 @@ def _make_memoize_key(
     if kwargs:
         for i, arg in enumerate(argspec.args):
             if arg in kwargs:
-                args = args[:i] + (kwargs.pop(arg),) + args[i:]
+                args = (*args[:i], kwargs.pop(arg), *args[i:])
 
     if args:
         key_args += args
diff --git a/src/_pytask/mark/expression.py b/src/_pytask/mark/expression.py
index 5300c15d..06700a26 100644
--- a/src/_pytask/mark/expression.py
+++ b/src/_pytask/mark/expression.py
@@ -179,7 +179,8 @@ def not_expr(s: Scanner) -> ast.expr:
     ident = s.accept(TokenType.IDENT)
     if ident:
         return ast.Name(IDENT_PREFIX + ident.value, ast.Load())
-    s.reject((TokenType.NOT, TokenType.LPAREN, TokenType.IDENT))  # noqa: RET503
+    s.reject((TokenType.NOT, TokenType.LPAREN, TokenType.IDENT))
+    return None
 
 
 class MatcherAdapter(Mapping[str, bool]):

From ba9a0d3741144ba429e6be9976b577e5ed146713 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Sat, 28 Jun 2025 20:18:47 +0200
Subject: [PATCH 3/9] Fix.

---
 src/_pytask/build.py          | 2 +-
 src/_pytask/dag_command.py    | 2 +-
 src/_pytask/debugging.py      | 4 ++--
 src/_pytask/warnings_utils.py | 2 +-
 tests/test_capture.py         | 2 +-
 tests/test_compat.py          | 4 ++--
 tests/test_path.py            | 4 ++--
 7 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/src/_pytask/build.py b/src/_pytask/build.py
index f2d8f7e4..7c912d59 100644
--- a/src/_pytask/build.py
+++ b/src/_pytask/build.py
@@ -222,7 +222,7 @@ def build(  # noqa: C901, PLR0912, PLR0913
         if "command" not in raw_config:
             raw_config["command"] = "build"
             # Add defaults from cli.
-            from _pytask.cli import DEFAULTS_FROM_CLI
+            from _pytask.cli import DEFAULTS_FROM_CLI  # noqa: PLC0415
 
             raw_config = {**DEFAULTS_FROM_CLI, **raw_config}
 
diff --git a/src/_pytask/dag_command.py b/src/_pytask/dag_command.py
index 3f14357b..3c5ac1ec 100644
--- a/src/_pytask/dag_command.py
+++ b/src/_pytask/dag_command.py
@@ -151,7 +151,7 @@ def build_dag(raw_config: dict[str, Any]) -> nx.DiGraph:
         if "command" not in raw_config:
             raw_config["command"] = "dag"
             # Add defaults from cli.
-            from _pytask.cli import DEFAULTS_FROM_CLI
+            from _pytask.cli import DEFAULTS_FROM_CLI  # noqa: PLC0415
 
             raw_config = {**DEFAULTS_FROM_CLI, **raw_config}
 
diff --git a/src/_pytask/debugging.py b/src/_pytask/debugging.py
index bec231a3..0ac3d62c 100644
--- a/src/_pytask/debugging.py
+++ b/src/_pytask/debugging.py
@@ -133,7 +133,7 @@ def _import_pdb_cls(
     ) -> type[pdb.Pdb]:
         """Create a debugger from an imported class."""
         if not cls._config:
-            import pdb  # noqa: T100
+            import pdb  # noqa: PLC0415, T100
 
             # Happens when using pytask.set_trace outside of a task.
             return pdb.Pdb
@@ -160,7 +160,7 @@ def _import_pdb_cls(
                 msg = f"--pdbcls: could not import {value!r}: {exc}."
                 raise ValueError(msg) from exc
         else:
-            import pdb  # noqa: T100
+            import pdb  # noqa: PLC0415, T100
 
             pdb_cls = pdb.Pdb
 
diff --git a/src/_pytask/warnings_utils.py b/src/_pytask/warnings_utils.py
index eb198f62..b7528353 100644
--- a/src/_pytask/warnings_utils.py
+++ b/src/_pytask/warnings_utils.py
@@ -119,7 +119,7 @@ def _resolve_warning_category(category: str) -> type[Warning]:
         return Warning
 
     if "." not in category:
-        import builtins as m
+        import builtins as m  # noqa: PLC0415
 
         klass = category
     else:
diff --git a/tests/test_capture.py b/tests/test_capture.py
index 1d57b6bc..e0c0f6b2 100644
--- a/tests/test_capture.py
+++ b/tests/test_capture.py
@@ -398,7 +398,7 @@ def test_unicode_and_str_mixture(self):
 
 
 def test_dontreadfrominput():
-    from _pytest.capture import DontReadFromInput
+    from _pytest.capture import DontReadFromInput  # noqa: PLC0415
 
     f = DontReadFromInput()
     assert f.buffer is f
diff --git a/tests/test_compat.py b/tests/test_compat.py
index 08e72fe8..10bc0f26 100644
--- a/tests/test_compat.py
+++ b/tests/test_compat.py
@@ -109,7 +109,7 @@ def test_bad_version(monkeypatch):
     result = import_optional_dependency("fakemodule", min_version="0.8")
     assert result is module
 
-    with pytest.warns(UserWarning):
+    with pytest.warns(UserWarning, match=match):
         result = import_optional_dependency("fakemodule", errors="warn")
     assert result is None
 
@@ -134,7 +134,7 @@ def test_submodule(monkeypatch):
     with pytest.raises(ImportError, match=match):
         import_optional_dependency("fakemodule.submodule")
 
-    with pytest.warns(UserWarning):
+    with pytest.warns(UserWarning, match=match):
         result = import_optional_dependency("fakemodule.submodule", errors="warn")
     assert result is None
 
diff --git a/tests/test_path.py b/tests/test_path.py
index 4a285f07..8cc9ba7c 100644
--- a/tests/test_path.py
+++ b/tests/test_path.py
@@ -164,7 +164,7 @@ def test_no_meta_path_found(
     assert module.foo(2) == 42  # type: ignore[attr-defined]
 
     # mode='importlib' fails if no spec is found to load the module
-    import importlib.util
+    import importlib.util  # noqa: PLC0415
 
     # Force module to be re-imported.
     del sys.modules[module.__name__]
@@ -269,7 +269,7 @@ class Data:
             )
         )
 
-        import pickle
+        import pickle  # noqa: PLC0415
 
         def round_trip(obj):
             s = pickle.dumps(obj)

From cf2c6a8d044084e38ec199821293369c4eaad40f Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 21 Jul 2025 17:56:01 +0000
Subject: [PATCH 4/9] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.12.1 → v0.12.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.1...v0.12.4)
---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 4b6b5dc8..7ed6f3cb 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -28,7 +28,7 @@ repos:
     -   id: python-no-log-warn
     -   id: text-unicode-replacement-char
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.12.1
+    rev: v0.12.4
     hooks:
       - id: ruff-format
       - id: ruff

From 6b1ee7ecb556b0741533e89172ffd58f17df62bd Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Fri, 25 Jul 2025 17:12:15 +0200
Subject: [PATCH 5/9] Flaky test.

---
 tests/test_dag_command.py | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/tests/test_dag_command.py b/tests/test_dag_command.py
index 3ca41baf..458546f3 100644
--- a/tests/test_dag_command.py
+++ b/tests/test_dag_command.py
@@ -62,6 +62,9 @@ def task_example(path=Path("input.txt")): ...
 
 
 @pytest.mark.skipif(not _TEST_SHOULD_RUN, reason="pygraphviz is required")
+@pytest.mark.xfail(
+    sys.platform == "linux" and sys.version_info[:2] == (3, 9), reason="flakey"
+)
 @pytest.mark.parametrize("layout", _GRAPH_LAYOUTS)
 @pytest.mark.parametrize("format_", _TEST_FORMATS)
 @pytest.mark.parametrize("rankdir", [_RankDirection.LR.value, _RankDirection.TB])

From 16b4dfc3d31ade54a9148fbd6751cd521adf2e14 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 29 Sep 2025 17:57:38 +0000
Subject: [PATCH 6/9] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v5.0.0...v6.0.0)
- [github.com/astral-sh/ruff-pre-commit: v0.12.4 → v0.13.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.4...v0.13.2)
- [github.com/crate-ci/typos: v1.34.0 → v1](https://github.com/crate-ci/typos/compare/v1.34.0...v1)
---
 .pre-commit-config.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 664e556e..b3b32647 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
     -   id: check-added-large-files
         args: ['--maxkb=25']
@@ -25,7 +25,7 @@ repos:
     -   id: python-no-log-warn
     -   id: text-unicode-replacement-char
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.12.4
+    rev: v0.13.2
     hooks:
       - id: ruff-format
       - id: ruff-check
@@ -55,7 +55,7 @@ repos:
     -   id: nbstripout
         exclude: (docs)
 -   repo: https://github.com/crate-ci/typos
-    rev: v1.34.0
+    rev: v1
     hooks:
     -   id: typos
         exclude: (\.ipynb)

From 58bc054904d6f99b57566c05a5a3c43436b61e2f Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 29 Sep 2025 17:58:13 +0000
Subject: [PATCH 7/9] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 src/_pytask/click.py  |  2 +-
 tests/test_capture.py | 12 ++++++------
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/src/_pytask/click.py b/src/_pytask/click.py
index 10a16867..eb79e211 100644
--- a/src/_pytask/click.py
+++ b/src/_pytask/click.py
@@ -186,7 +186,7 @@ def parse_args(self, ctx: Context, args: list[str]) -> list[str]:
         opts, args, param_order = parser.parse_args(args=args)
 
         for param in _iter_params_for_processing(param_order, self.get_params(ctx)):
-            value, args = param.handle_parse_result(ctx, opts, args)
+            _value, args = param.handle_parse_result(ctx, opts, args)
 
         if args and not ctx.allow_extra_args and not ctx.resilient_parsing:
             ctx.fail(
diff --git a/tests/test_capture.py b/tests/test_capture.py
index e0c0f6b2..ed81ca7d 100644
--- a/tests/test_capture.py
+++ b/tests/test_capture.py
@@ -196,7 +196,7 @@ def test_capturing_basic_api(self, method):
             capman.resume()
             print("hello")
             capman.suspend()
-            out, err = capman.read()
+            out, _err = capman.read()
             if method != CaptureMethod.NO:
                 assert out == "hello\n"
             capman.stop_capturing()
@@ -624,7 +624,7 @@ def test_capture_results_accessible_by_attribute(self):
     def test_capturing_readouterr_unicode(self):
         with self.getcapture() as cap:
             print("hxąć")
-            out, err = cap.readouterr()
+            out, _err = cap.readouterr()
         assert out == "hxąć\n"
 
     def test_reset_twice_error(self):
@@ -656,8 +656,8 @@ def test_capturing_error_recursive(self):
             print("cap1")
             with self.getcapture() as cap2:
                 print("cap2")
-                out2, err2 = cap2.readouterr()
-                out1, err1 = cap1.readouterr()
+                out2, _err2 = cap2.readouterr()
+                out1, _err1 = cap1.readouterr()
         assert out1 == "cap1\n"
         assert out2 == "cap2\n"
 
@@ -702,8 +702,8 @@ def test_capturing_error_recursive(self):
             print("cap1")
             with self.getcapture() as cap2:
                 print("cap2")
-                out2, err2 = cap2.readouterr()
-                out1, err1 = cap1.readouterr()
+                out2, _err2 = cap2.readouterr()
+                out1, _err1 = cap1.readouterr()
         assert out1 == "cap1\ncap2\n"
         assert out2 == "cap2\n"
 

From 9912c18f751bf31cbdde40002cd214e307e4503f Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Fri, 3 Oct 2025 10:51:38 +0200
Subject: [PATCH 8/9] Fix.

---
 pyproject.toml          | 1 -
 tests/test_capture.py   | 2 +-
 tests/test_compat.py    | 2 +-
 tests/test_dag_utils.py | 2 +-
 4 files changed, 3 insertions(+), 4 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index d76c64a9..17d9f8fb 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -122,7 +122,6 @@ ignore = [
     "COM812", # Comply with ruff-format.
     "ISC001", # Comply with ruff-format.
     "FBT",
-    "PD901",  # Avoid generic df for dataframes.
     "S101",   # raise errors for asserts.
     "S603",   # Call check with subprocess.run.
     "S607",   # Call subprocess.run with partial executable path.
diff --git a/tests/test_capture.py b/tests/test_capture.py
index e0c0f6b2..cf86ba26 100644
--- a/tests/test_capture.py
+++ b/tests/test_capture.py
@@ -188,7 +188,7 @@ def test_capturing_basic_api(self, method):
             assert outerr == ("", "")
             print("hello")
             capman.suspend()
-            out, err = capman.read()
+            out, _err = capman.read()
             if method == CaptureMethod.NO:
                 assert old == (sys.stdout, sys.stderr, sys.stdin)
             else:
diff --git a/tests/test_compat.py b/tests/test_compat.py
index 10bc0f26..df4aaf9f 100644
--- a/tests/test_compat.py
+++ b/tests/test_compat.py
@@ -149,5 +149,5 @@ def test_no_version_raises(monkeypatch):
     sys.modules[name] = module
     monkeypatch.setitem(_MINIMUM_VERSIONS, name, "1.0.0")
 
-    with pytest.raises(ImportError, match="Can't determine .* fakemodule"):
+    with pytest.raises(ImportError, match=r"Can't determine .* fakemodule"):
         import_optional_dependency(name)
diff --git a/tests/test_dag_utils.py b/tests/test_dag_utils.py
index aaeefa41..a33c04c7 100644
--- a/tests/test_dag_utils.py
+++ b/tests/test_dag_utils.py
@@ -153,7 +153,7 @@ def test_raise_error_for_cycle_in_graph(dag):
         "115f685b0af2aef0c7317a0b48562f34cfb7a622549562bd3d34d4d948b4fdab",
         "55c6cef62d3e62d5f8fc65bb846e66d8d0d3ca60608c04f6f7b095ea073a7dcf",
     )
-    with pytest.raises(ValueError, match="The DAG contains cycles."):
+    with pytest.raises(ValueError, match=r"The DAG contains cycles\."):
         TopologicalSorter.from_dag(dag)
 
 

From 3c2134e12b97ce4d86a85eaea3b9754eb07333c8 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Fri, 3 Oct 2025 10:52:36 +0200
Subject: [PATCH 9/9] FIx.

---
 src/_pytask/build.py           | 2 +-
 src/_pytask/collect_command.py | 2 +-
 src/_pytask/dag_command.py     | 4 ++--
 src/_pytask/mark/__init__.py   | 2 +-
 src/_pytask/profile.py         | 2 +-
 5 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/src/_pytask/build.py b/src/_pytask/build.py
index 7c912d59..b5ccf0bf 100644
--- a/src/_pytask/build.py
+++ b/src/_pytask/build.py
@@ -254,7 +254,7 @@ def build(  # noqa: C901, PLR0912, PLR0913
 
         session = Session.from_config(config_)
 
-    except (ConfigurationError, Exception):
+    except (ConfigurationError, Exception):  # noqa: BLE001
         console.print(Traceback(sys.exc_info()))
         session = Session(exit_code=ExitCode.CONFIGURATION_FAILED)
 
diff --git a/src/_pytask/collect_command.py b/src/_pytask/collect_command.py
index 2e953e5c..6b7b8f6a 100644
--- a/src/_pytask/collect_command.py
+++ b/src/_pytask/collect_command.py
@@ -63,7 +63,7 @@ def collect(**raw_config: Any | None) -> NoReturn:
         config = pm.hook.pytask_configure(pm=pm, raw_config=raw_config)
         session = Session.from_config(config)
 
-    except (ConfigurationError, Exception):  # pragma: no cover
+    except (ConfigurationError, Exception):  # noqa: BLE001  # pragma: no cover
         session = Session(exit_code=ExitCode.CONFIGURATION_FAILED)
         console.print_exception()
 
diff --git a/src/_pytask/dag_command.py b/src/_pytask/dag_command.py
index 3c5ac1ec..8127735f 100644
--- a/src/_pytask/dag_command.py
+++ b/src/_pytask/dag_command.py
@@ -87,7 +87,7 @@ def dag(**raw_config: Any) -> int:
         config = pm.hook.pytask_configure(pm=pm, raw_config=raw_config)
         session = Session.from_config(config)
 
-    except (ConfigurationError, Exception):  # pragma: no cover
+    except (ConfigurationError, Exception):  # noqa: BLE001  # pragma: no cover
         console.print_exception()
         session = Session(exit_code=ExitCode.CONFIGURATION_FAILED)
 
@@ -183,7 +183,7 @@ def build_dag(raw_config: dict[str, Any]) -> nx.DiGraph:
 
         session = Session.from_config(config)
 
-    except (ConfigurationError, Exception):  # pragma: no cover
+    except (ConfigurationError, Exception):  # noqa: BLE001  # pragma: no cover
         console.print_exception()
         session = Session(exit_code=ExitCode.CONFIGURATION_FAILED)
 
diff --git a/src/_pytask/mark/__init__.py b/src/_pytask/mark/__init__.py
index e2586a46..9d49b6e0 100644
--- a/src/_pytask/mark/__init__.py
+++ b/src/_pytask/mark/__init__.py
@@ -59,7 +59,7 @@ def markers(**raw_config: Any) -> NoReturn:
         config = pm.hook.pytask_configure(pm=pm, raw_config=raw_config)
         session = Session.from_config(config)
 
-    except (ConfigurationError, Exception):  # pragma: no cover
+    except (ConfigurationError, Exception):  # noqa: BLE001  # pragma: no cover
         console.print_exception()
         session = Session(exit_code=ExitCode.CONFIGURATION_FAILED)
 
diff --git a/src/_pytask/profile.py b/src/_pytask/profile.py
index 5063e511..60884708 100644
--- a/src/_pytask/profile.py
+++ b/src/_pytask/profile.py
@@ -121,7 +121,7 @@ def profile(**raw_config: Any) -> NoReturn:
         config = pm.hook.pytask_configure(pm=pm, raw_config=raw_config)
         session = Session.from_config(config)
 
-    except (ConfigurationError, Exception):  # pragma: no cover
+    except (ConfigurationError, Exception):  # noqa: BLE001  # pragma: no cover
         session = Session(exit_code=ExitCode.CONFIGURATION_FAILED)
         console.print(Traceback(sys.exc_info()))