diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 85049918..510a4255 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -25,8 +25,10 @@ jobs:
       - uses: astral-sh/setup-uv@v6
         with:
           enable-cache: true
-      - run: uv run --no-dev --group typing mypy
-      - run: uv run --no-dev --group typing nbqa mypy --ignore-missing-imports .
+      - name: Install just
+        uses: extractions/setup-just@v2
+      - run: just typing
+      - run: just typing-nb
 
   run-tests:
 
@@ -43,8 +45,10 @@ jobs:
       - uses: actions/checkout@v4
       - uses: astral-sh/setup-uv@v6
         with:
-          python-version: ${{ matrix.python-version }}
           enable-cache: true
+          python-version: ${{ matrix.python-version }}
+      - name: Install just
+        uses: extractions/setup-just@v2
 
       - if: matrix.os == 'ubuntu-latest'
         run: |
@@ -53,15 +57,15 @@ jobs:
 
       - name: Run tests, doctests, and notebook tests
         shell: bash -l {0}
-        run: uv run --group test pytest --nbmake --cov=src --cov=tests --cov-report=xml -n auto
+        run: just test-cov
 
       - name: Upload test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5
 
       - name: Run tests with lowest resolution
         if: matrix.python-version == '3.9' && matrix.os == 'ubuntu-latest'
-        run: uv run --group test --resolution lowest-direct pytest --nbmake -n auto
+        run: just test-lowest
 
       - name: Run tests with highest resolution
         if: matrix.python-version == '3.13' && matrix.os == 'ubuntu-latest'
-        run: uv run --group test --resolution highest pytest --nbmake -n auto
+        run: just test-highest
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 7ed6f3cb..664e556e 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,3 @@
-ci:
-    skip: [type-checking]
-
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
     rev: v5.0.0
@@ -31,7 +28,7 @@ repos:
     rev: v0.12.4
     hooks:
       - id: ruff-format
-      - id: ruff
+      - id: ruff-check
 -   repo: https://github.com/executablebooks/mdformat
     rev: 0.7.22
     hooks:
@@ -58,7 +55,7 @@ repos:
     -   id: nbstripout
         exclude: (docs)
 -   repo: https://github.com/crate-ci/typos
-    rev: v1
+    rev: v1.34.0
     hooks:
     -   id: typos
         exclude: (\.ipynb)
@@ -67,10 +64,3 @@ repos:
     -   id: check-hooks-apply
     -   id: check-useless-excludes
     # -   id: identity  # Prints all files passed to pre-commits. Debugging.
--   repo: local
-    hooks:
-    -   id: type-checking
-        name: type-checking
-        entry: uv run --group typing mypy
-        language: system
-        pass_filenames: false
diff --git a/justfile b/justfile
index dbb4d19f..5dd930e2 100644
--- a/justfile
+++ b/justfile
@@ -1,7 +1,3 @@
-# Default recipe to display available commands
-default:
-    @just --list
-
 # Install all dependencies
 install:
     uv sync --all-groups
@@ -20,11 +16,11 @@ test-nb:
 
 # Run type checking
 typing:
-    uv run --group typing mypy check
+    uv run --group typing --no-dev --isolated mypy
 
 # Run type checking on notebooks
 typing-nb:
-    uv run --group typing nbqa mypy --ignore-missing-imports .
+    uv run --group typing --no-dev --isolated nbqa mypy --ignore-missing-imports .
 
 # Run linting
 lint:
diff --git a/src/_pytask/click.py b/src/_pytask/click.py
index 7da27f08..10a16867 100644
--- a/src/_pytask/click.py
+++ b/src/_pytask/click.py
@@ -39,7 +39,7 @@
 if importlib.metadata.version("click") < "8.2":
     from click.parser import split_opt
 
-    class EnumChoice(Choice):
+    class EnumChoice(Choice):  # type: ignore[type-arg, unused-ignore]
         """An enum-based choice type.
 
         The implementation is copied from https://github.com/pallets/click/pull/2210 and
@@ -71,17 +71,17 @@ def convert(
             return self.enum_type(value)
 
 else:
-    from click.parser import (  # type: ignore[attr-defined, no-redef]
+    from click.parser import (  # type: ignore[attr-defined, no-redef, unused-ignore]
         _split_opt as split_opt,
     )
 
     ParamTypeValue = TypeVar("ParamTypeValue")
 
-    class EnumChoice(Choice):  # type: ignore[no-redef]
+    class EnumChoice(Choice):  # type: ignore[no-redef, type-arg, unused-ignore]
         def __init__(
             self, choices: Iterable[ParamTypeValue], case_sensitive: bool = False
         ) -> None:
-            super().__init__(choices=choices, case_sensitive=case_sensitive)  # type: ignore[arg-type]
+            super().__init__(choices=choices, case_sensitive=case_sensitive)  # type: ignore[arg-type, unused-ignore]
 
 
 class _OptionHighlighter(RegexHighlighter):
@@ -340,7 +340,7 @@ def _format_help_text(  # noqa: C901, PLR0912, PLR0915
         elif param.is_bool_flag and param.secondary_opts:  # type: ignore[attr-defined]
             # For boolean flags that have distinct True/False opts,
             # use the opt without prefix instead of the value.
-            default_string = split_opt(
+            default_string = split_opt(  # type: ignore[operator, unused-ignore]
                 (param.opts if param.default else param.secondary_opts)[0]
             )[1]
         elif (