diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 41192f1c..b9ccf5ca 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,3 +1,6 @@ +ci: + skip: [type-checking] + repos: - repo: https://github.com/pre-commit/pre-commit-hooks rev: v5.0.0 @@ -64,3 +67,10 @@ repos: - id: check-hooks-apply - id: check-useless-excludes # - id: identity # Prints all files passed to pre-commits. Debugging. +- repo: local + hooks: + - id: type-checking + name: type-checking + entry: uv run --group typing mypy + language: system + pass_filenames: false diff --git a/docs/source/changes.md b/docs/source/changes.md index d53d7d24..0e2aa95a 100644 --- a/docs/source/changes.md +++ b/docs/source/changes.md @@ -5,6 +5,12 @@ chronological order. Releases follow [semantic versioning](https://semver.org/) releases are available on [PyPI](https://pypi.org/project/pytask) and [Anaconda.org](https://anaconda.org/conda-forge/pytask). +## 0.5.4 - 2025-xx-xx + +- {pull}`676` ensures compatibility with click >8.2.0. +- {pull}`680` uses uv everywhere. +- {pull}`684` adds tests for lowest and highest dependency resolutions. + ## 0.5.3 - 2025-05-16 - {pull}`650` allows to identify from which data catalog a node is coming from. Thanks diff --git a/docs/source/how_to_guides/functional_interface.ipynb b/docs/source/how_to_guides/functional_interface.ipynb index d4b657ef..76b6eedc 100644 --- a/docs/source/how_to_guides/functional_interface.ipynb +++ b/docs/source/how_to_guides/functional_interface.ipynb @@ -72,11 +72,11 @@ { "data": { "text/html": [ - "
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PathNode(path=PosixPath('/Users/tobiasr/git/pytask/docs/source/how_to_guides/second.txt'), name='pytask/docs/source/how_to_guides/second.txt', attributes={})}, produces={'return': PathNode(path=PosixPath('/Users/tobiasr/git/pytask/docs/source/how_to_guides/hello_world.txt'), name='pytask/docs/source/how_to_guides/hello_world.txt', attributes={})}, markers=[Mark(name='task', args=(), kwargs={})], report_sections=[], attributes={'collection_id': UUID('2fe578c8-ab38-4d0d-bb34-e12df5b5975b'), 'after': [], 'is_generator': False, 'duration': (1749282511.055661, 1749282511.056195)}), outcome=, exc_info=None, sections=[])], exit_code=, collection_start=1749282510.959347, collection_end=1749282510.9617531, execution_start=1749282510.962504, execution_end=1749282511.06384, n_tasks_failed=0, scheduler=TopologicalSorter(dag=, priorities={'82d6a7ce01a2a50d5d4bd5081d662df92b8c500fbc172f94fb026c9d1d4ebc4a': 0, '45a637ca3cc7aa973d4b315cc1bef02217b79918357fd35c6fa61f4e2d2f9948': 0, 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       ]
      },
      "execution_count": 4,
@@ -303,41 +303,41 @@
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-      "\u001b[0;34m\u001b[0m    \u001b[0mconfig\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0;34m'Path | None'\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;32mNone\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\n",
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-      "\u001b[0;34m\u001b[0m    \u001b[0meditor_url_scheme\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0;34m\"Literal['no_link', 'file', 'vscode', 'pycharm'] | str\"\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m'file'\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\n",
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-      "\u001b[0;34m\u001b[0m    \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0;34m'Any'\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\n",
-      "\u001b[0;34m\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;34m->\u001b[0m \u001b[0;34m'Session'\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
-      "\u001b[0;31mDocstring:\u001b[0m\n",
+      "\u001b[31mSignature:\u001b[39m\n",
+      "pytask.build(\n",
+      "    *,\n",
+      "    capture: \u001b[33m\"Literal['fd', 'no', 'sys', 'tee-sys'] | CaptureMethod\"\u001b[39m = ,\n",
+      "    check_casing_of_paths: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mTrue\u001b[39;00m,\n",
+      "    config: \u001b[33m'Path | None'\u001b[39m = \u001b[38;5;28;01mNone\u001b[39;00m,\n",
+      "    database_url: \u001b[33m'str'\u001b[39m = \u001b[33m''\u001b[39m,\n",
+      "    debug_pytask: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    disable_warnings: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    dry_run: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    editor_url_scheme: \u001b[33m\"Literal['no_link', 'file', 'vscode', 'pycharm'] | str\"\u001b[39m = \u001b[33m'file'\u001b[39m,\n",
+      "    expression: \u001b[33m'str'\u001b[39m = \u001b[33m''\u001b[39m,\n",
+      "    force: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    ignore: \u001b[33m'Iterable[str]'\u001b[39m = (),\n",
+      "    marker_expression: \u001b[33m'str'\u001b[39m = \u001b[33m''\u001b[39m,\n",
+      "    max_failures: \u001b[33m'float'\u001b[39m = inf,\n",
+      "    n_entries_in_table: \u001b[33m'int'\u001b[39m = \u001b[32m15\u001b[39m,\n",
+      "    paths: \u001b[33m'Path | Iterable[Path]'\u001b[39m = (),\n",
+      "    pdb: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    pdb_cls: \u001b[33m'str'\u001b[39m = \u001b[33m''\u001b[39m,\n",
+      "    s: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    show_capture: \u001b[33m\"Literal['no', 'stdout', 'stderr', 'all'] | ShowCapture\"\u001b[39m = ,\n",
+      "    show_errors_immediately: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    show_locals: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    show_traceback: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mTrue\u001b[39;00m,\n",
+      "    sort_table: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mTrue\u001b[39;00m,\n",
+      "    stop_after_first_failure: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    strict_markers: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    tasks: \u001b[33m'Callable[..., Any] | PTask | Iterable[Callable[..., Any] | PTask]'\u001b[39m = (),\n",
+      "    task_files: \u001b[33m'Iterable[str]'\u001b[39m = (\u001b[33m'task_*.py'\u001b[39m,),\n",
+      "    trace: \u001b[33m'bool'\u001b[39m = \u001b[38;5;28;01mFalse\u001b[39;00m,\n",
+      "    verbose: \u001b[33m'int'\u001b[39m = \u001b[32m1\u001b[39m,\n",
+      "    **kwargs: \u001b[33m'Any'\u001b[39m,\n",
+      ") -> \u001b[33m'Session'\u001b[39m\n",
+      "\u001b[31mDocstring:\u001b[39m\n",
       "Run pytask.\n",
       "\n",
       "This is the main command to run pytask which usually receives kwargs from the\n",
@@ -362,14 +362,14 @@
       "    Whether a dry-run should be performed that shows which tasks need to be rerun.\n",
       "editor_url_scheme\n",
       "    An url scheme that allows to click on task names, node names and filenames and\n",
-      "    jump right into you preferred edior to the right line.\n",
+      "    jump right into you preferred editor to the right line.\n",
       "expression\n",
       "    Same as ``-k`` on the command line. Select tasks via expressions on task ids.\n",
       "force\n",
       "    Run tasks even though they would be skipped since nothing has changed.\n",
       "ignore\n",
-      "    A pattern to ignore files or directories. Refer to ``pathlib.Path.match``\n",
-      "    for more info.\n",
+      "    A pattern to ignore files or directories. Refer to ``pathlib.Path.match`` for\n",
+      "    more info.\n",
       "marker_expression\n",
       "    Same as ``-m`` on the command line. Select tasks via marker expressions.\n",
       "max_failures\n",
@@ -386,7 +386,7 @@
       "    Start a custom debugger on errors. For example:\n",
       "    ``--pdbcls=IPython.terminal.debugger:TerminalPdb``\n",
       "s\n",
-      "    Shortcut for ``pytask.build(capture\"no\")``.\n",
+      "    Shortcut for ``capture=\"no\"``.\n",
       "show_capture\n",
       "    Choose which captured output should be shown for failed tasks.\n",
       "show_errors_immediately\n",
@@ -402,7 +402,8 @@
       "strict_markers\n",
       "    Raise errors for unknown markers.\n",
       "tasks\n",
-      "    A task or a collection of tasks that is passed to ``pytask.build(tasks=...)``.\n",
+      "    A task or a collection of tasks which can be callables or instances following\n",
+      "    {class}`~pytask.PTask`.\n",
       "task_files\n",
       "    A pattern to describe modules that contain tasks.\n",
       "trace\n",
@@ -414,8 +415,8 @@
       "-------\n",
       "session : pytask.Session\n",
       "    The session captures all the information of the current run.\n",
-      "\u001b[0;31mFile:\u001b[0m      ~/git/pytask/src/_pytask/build.py\n",
-      "\u001b[0;31mType:\u001b[0m      function"
+      "\u001b[31mFile:\u001b[39m      ~/git/pytask/src/_pytask/build.py\n",
+      "\u001b[31mType:\u001b[39m      function"
      ]
     }
    ],
@@ -437,7 +438,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "pytask",
+   "display_name": ".venv",
    "language": "python",
    "name": "python3"
   },
@@ -451,7 +452,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.5"
+   "version": "3.12.2"
   }
  },
  "nbformat": 4,
diff --git a/pyproject.toml b/pyproject.toml
index 10e4e536..042f00bd 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -22,7 +22,7 @@ classifiers = [
 dynamic = ["version"]
 dependencies = [
     "attrs>=21.3.0",
-    "click>=8.1.8,<8.2.0",
+    "click>=8.1.8,!=8.2.0",
     "click-default-group>=1.2.4",
     "networkx>=2.4.0",
     "optree>=0.9.0",
@@ -51,6 +51,7 @@ dev = ["pygraphviz>=1.11;platform_system=='Linux'"]
 docs = [
     "furo>=2024.8.6",
     "ipython>=8.13.2",
+    "ipywidgets>=8.1.6",
     "matplotlib>=3.5.0",
     "myst-parser>=3.0.0",
     "myst-nb>=1.2.0",
diff --git a/src/_pytask/cli.py b/src/_pytask/cli.py
index 13046646..49ab6464 100644
--- a/src/_pytask/cli.py
+++ b/src/_pytask/cli.py
@@ -2,10 +2,10 @@
 
 from __future__ import annotations
 
+import importlib.metadata
 from typing import Any
 
 import click
-from packaging.version import parse as parse_version
 
 from _pytask.click import ColoredGroup
 from _pytask.pluginmanager import storage
@@ -16,7 +16,7 @@
 }
 
 
-if parse_version(click.__version__) >= parse_version("8"):  # pragma: no cover
+if importlib.metadata.version("click") >= "8":  # pragma: no cover
     _VERSION_OPTION_KWARGS = {"package_name": "pytask"}
 else:  # pragma: no cover
     _VERSION_OPTION_KWARGS = {}
diff --git a/src/_pytask/click.py b/src/_pytask/click.py
index 9b19eb93..7da27f08 100644
--- a/src/_pytask/click.py
+++ b/src/_pytask/click.py
@@ -2,6 +2,7 @@
 
 from __future__ import annotations
 
+import importlib.metadata
 import inspect
 from enum import Enum
 from gettext import gettext as _
@@ -9,15 +10,16 @@
 from typing import TYPE_CHECKING
 from typing import Any
 from typing import ClassVar
+from typing import TypeVar
 
 import click
 from click import Choice
 from click import Command
 from click import Context
 from click import Parameter
-from click.parser import split_opt
 from click_default_group import DefaultGroup
 from rich.highlighter import RegexHighlighter
+from rich.padding import Padding
 from rich.panel import Panel
 from rich.table import Table
 from rich.text import Text
@@ -27,40 +29,59 @@
 from _pytask.console import create_panel_title
 
 if TYPE_CHECKING:
+    from collections.abc import Iterable
     from collections.abc import Sequence
 
 
 __all__ = ["ColoredCommand", "ColoredGroup", "EnumChoice"]
 
 
-class EnumChoice(Choice):
-    """An enum-based choice type.
+if importlib.metadata.version("click") < "8.2":
+    from click.parser import split_opt
 
-    The implementation is copied from https://github.com/pallets/click/pull/2210 and
-    related discussion can be found in https://github.com/pallets/click/issues/605.
+    class EnumChoice(Choice):
+        """An enum-based choice type.
 
-    In contrast to using :class:`click.Choice`, using this type ensures that the error
-    message does not show the enum members.
+        The implementation is copied from https://github.com/pallets/click/pull/2210 and
+        related discussion can be found in https://github.com/pallets/click/issues/605.
 
-    In contrast to the proposed implementation in the PR, this implementation does not
-    use the members than rather the values of the enum.
+        In contrast to using :class:`click.Choice`, using this type ensures that the
+        error message does not show the enum members.
 
-    """
+        In contrast to the proposed implementation in the PR, this implementation does
+        not use the members than rather the values of the enum.
 
-    def __init__(self, enum_type: type[Enum], case_sensitive: bool = True) -> None:
-        super().__init__(
-            choices=[element.value for element in enum_type],
-            case_sensitive=case_sensitive,
-        )
-        self.enum_type = enum_type
+        """
+
+        def __init__(self, enum_type: type[Enum], case_sensitive: bool = True) -> None:
+            super().__init__(
+                choices=[element.value for element in enum_type],
+                case_sensitive=case_sensitive,
+            )
+            self.enum_type = enum_type
+
+        def convert(
+            self, value: Any, param: Parameter | None, ctx: Context | None
+        ) -> Any:
+            if isinstance(value, Enum):
+                value = value.value
+            value = super().convert(value=value, param=param, ctx=ctx)
+            if value is None:
+                return None
+            return self.enum_type(value)
+
+else:
+    from click.parser import (  # type: ignore[attr-defined, no-redef]
+        _split_opt as split_opt,
+    )
+
+    ParamTypeValue = TypeVar("ParamTypeValue")
 
-    def convert(self, value: Any, param: Parameter | None, ctx: Context | None) -> Any:
-        if isinstance(value, Enum):
-            value = value.value
-        value = super().convert(value=value, param=param, ctx=ctx)
-        if value is None:
-            return None
-        return self.enum_type(value)
+    class EnumChoice(Choice):  # type: ignore[no-redef]
+        def __init__(
+            self, choices: Iterable[ParamTypeValue], case_sensitive: bool = False
+        ) -> None:
+            super().__init__(choices=choices, case_sensitive=case_sensitive)  # type: ignore[arg-type]
 
 
 class _OptionHighlighter(RegexHighlighter):
@@ -119,7 +140,10 @@ def format_help(
         _print_options(self, ctx)
 
         console.print(
-            "[bold #FF0000]♥[/] [#f2f2f2]https://pytask-dev.readthedocs.io[/]",
+            Padding(
+                "[bold #FF0000]♥[/] [#f2f2f2]https://pytask-dev.readthedocs.io[/]",
+                (0, 3, 0, 0),
+            ),
             justify="right",
         )
 
@@ -197,7 +221,10 @@ def format_help(
         _print_options(self, ctx)
 
         console.print(
-            "[bold #FF0000]♥[/] [#f2f2f2]https://pytask-dev.readthedocs.io[/]",
+            Padding(
+                "[bold #FF0000]♥[/] [#f2f2f2]https://pytask-dev.readthedocs.io[/]",
+                (0, 3, 0, 0),
+            ),
             justify="right",
         )
 
diff --git a/uv.lock b/uv.lock
index 5591300d..86aff736 100644
--- a/uv.lock
+++ b/uv.lock
@@ -3444,6 +3444,7 @@ docs = [
     { name = "ipython", version = "8.18.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" },
     { name = "ipython", version = "8.37.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.10.*'" },
     { name = "ipython", version = "9.3.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
+    { name = "ipywidgets" },
     { name = "matplotlib", version = "3.9.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" },
     { name = "matplotlib", version = "3.10.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
     { name = "myst-nb" },
@@ -3470,6 +3471,7 @@ test = [
     { name = "deepdiff" },
     { name = "nbmake" },
     { name = "pexpect" },
+    { name = "pygments" },
     { name = "pytest" },
     { name = "pytest-cov" },
     { name = "pytest-xdist" },
@@ -3483,16 +3485,16 @@ typing = [
 [package.metadata]
 requires-dist = [
     { name = "attrs", specifier = ">=21.3.0" },
-    { name = "click", specifier = ">=8.1.8,<8.2.0" },
+    { name = "click", specifier = ">=8.1.8,!=8.2.0" },
     { name = "click-default-group", specifier = ">=1.2.4" },
-    { name = "networkx", specifier = ">=3.0.0" },
+    { name = "networkx", specifier = ">=2.4.0" },
     { name = "optree", specifier = ">=0.9.0" },
     { name = "packaging", specifier = ">=23.0.0" },
     { name = "pluggy", specifier = ">=1.3.0" },
     { name = "rich", specifier = ">=13.8.0" },
-    { name = "sqlalchemy", specifier = ">=2.0.0" },
+    { name = "sqlalchemy", specifier = ">=2.0.31" },
     { name = "tomli", marker = "python_full_version < '3.11'", specifier = ">=1" },
-    { name = "typing-extensions", marker = "python_full_version < '3.11'", specifier = ">=4.5.0" },
+    { name = "typing-extensions", marker = "python_full_version < '3.11'", specifier = ">=4.8.0" },
     { name = "universal-pathlib", specifier = ">=0.2.2" },
 ]
 
@@ -3501,30 +3503,32 @@ dev = [{ name = "pygraphviz", marker = "sys_platform == 'linux'", specifier = ">
 docs = [
     { name = "furo", specifier = ">=2024.8.6" },
     { name = "ipython", specifier = ">=8.13.2" },
+    { name = "ipywidgets", specifier = ">=8.1.6" },
     { name = "matplotlib", specifier = ">=3.5.0" },
-    { name = "myst-nb" },
-    { name = "myst-parser" },
+    { name = "myst-nb", specifier = ">=1.2.0" },
+    { name = "myst-parser", specifier = ">=3.0.0" },
     { name = "sphinx", specifier = ">=7.0.0" },
-    { name = "sphinx-click" },
-    { name = "sphinx-copybutton" },
+    { name = "sphinx-click", specifier = ">=6.0.0" },
+    { name = "sphinx-copybutton", specifier = ">=0.5.2" },
     { name = "sphinx-design", specifier = ">=0.3" },
-    { name = "sphinx-toolbox" },
-    { name = "sphinxext-opengraph" },
+    { name = "sphinx-toolbox", specifier = ">=4.0.0" },
+    { name = "sphinxext-opengraph", specifier = ">=0.10.0" },
 ]
 plugin-list = [
-    { name = "httpx" },
+    { name = "httpx", specifier = ">=0.27.0" },
     { name = "tabulate", extras = ["widechars"], specifier = ">=0.9.0" },
-    { name = "tqdm" },
+    { name = "tqdm", specifier = ">=4.66.3" },
 ]
 test = [
     { name = "aiohttp", specifier = ">=3.11.0" },
     { name = "cloudpickle", specifier = ">=3.0.0" },
     { name = "coiled", specifier = ">=1.42.0" },
-    { name = "deepdiff" },
-    { name = "nbmake" },
-    { name = "pexpect" },
+    { name = "deepdiff", specifier = ">=7.0.0" },
+    { name = "nbmake", specifier = ">=1.5.5" },
+    { name = "pexpect", specifier = ">=4.9.0" },
+    { name = "pygments", specifier = ">=2.18.0" },
     { name = "pytest", specifier = ">=8.4.0" },
-    { name = "pytest-cov" },
+    { name = "pytest-cov", specifier = ">=5.0.0" },
     { name = "pytest-xdist", specifier = ">=3.6.1" },
     { name = "syrupy", specifier = ">=4.5.0" },
 ]