From 72b90bf9df8581c69b41e7b1c65505fd53432f3e Mon Sep 17 00:00:00 2001 From: Victor Date: Wed, 5 May 2021 11:41:19 -0600 Subject: [PATCH 1/9] BLD: add file nominees/apache-ctakes.json --- products/apache-ctakes.json | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 products/apache-ctakes.json diff --git a/products/apache-ctakes.json b/products/apache-ctakes.json new file mode 100644 index 0000000..d5ce183 --- /dev/null +++ b/products/apache-ctakes.json @@ -0,0 +1,36 @@ +{ + "name": "Apache cTAKES", + "aliases": [ + "Apache clinical Text Analysis and Knowledge Extraction System" + ], + "description": "Apache cTAKES is a natural language processing system for extraction of information from electronic medical record clinical free-text.", + "website": "http://ctakes.apache.org/", + "license": [ + { + "spdx": "Apache-2.0", + "licenseURL": "https://github.com/apache/ctakes/blob/trunk/LICENSE" + } + ], + "SDGs": [ + { + "SDGNumber": 3, + "evidenceURL": "https://www.openhealthnews.com/content/apachecon-2020-features-natural-language-processing-electronic-medical-records-dedicated-tra" + }, + { + "SDGNumber": 9, + "evidenceURL": "https://www.openhealthnews.com/content/apachecon-2020-features-natural-language-processing-electronic-medical-records-dedicated-tra" + } + ], + "type": [ + "software" + ], + "repositoryURL": "https://github.com/apache/ctakes", + "organizations": [ + { + "name": "The Apache Software Foundation", + "website": "https://apache.org", + "org_type": "owner" + } + ], + "stage": "nominee" +} From 7b41ecea2c3596ac6e932b4457817ec21bf9fbfb Mon Sep 17 00:00:00 2001 From: Victor Date: Wed, 5 May 2021 11:41:19 -0600 Subject: [PATCH 2/9] BLD: add file nominees/caisis.json --- products/caisis.json | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 products/caisis.json diff --git a/products/caisis.json b/products/caisis.json new file mode 100644 index 0000000..6fa8821 --- /dev/null +++ b/products/caisis.json @@ -0,0 +1,35 @@ +{ + "name": "Caisis", + "description": "Caisis is an open-source, web-based, patient data management system that integrates research with patient care. The system is freely distributed to promote the collection of standard, well structured data suitable for research and multi-institution collaboration.", + "website": "http://www.caisis.org/", + "license": [ + { + "spdx": "GPL-2.0", + "licenseURL": "https://github.com/biodigital-inc/caisis/blob/master/LICENSE" + } + ], + "SDGs": [ + { + "SDGNumber": 3, + "evidenceURL": "https://grantome.com/grant/NIH/R01-CA119947-01" + }, + { + "SDGNumber": 17, + "evidenceText": "For over a decade, collaboration with multiple centers has allowed Caisis to develop and evolve in an environment of constant feedback and scrutiny", + "evidenceURL": "https://grantome.com/grant/NIH/R01-CA119947-02" + } + ], + "type": [ + "software" + ], + "repositoryURL": "https://github.com/biodigital-inc/caisis", + "organizations": [ + { + "name": "BioDigital", + "website": "http://www.biodigital.com/", + "org_type": "owner", + "contact_email": "info@biodigital.com" + } + ], + "stage": "nominee" +} From 788a0e6dcfd787207fd454b70c5b4347e6ca8b1d Mon Sep 17 00:00:00 2001 From: Victor Date: Wed, 5 May 2021 11:41:19 -0600 Subject: [PATCH 3/9] BLD: add file nominees/cookie-consent.json --- products/cookie-consent.json | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 products/cookie-consent.json diff --git a/products/cookie-consent.json b/products/cookie-consent.json new file mode 100644 index 0000000..7bb0e3b --- /dev/null +++ b/products/cookie-consent.json @@ -0,0 +1,30 @@ +{ + "name": "Cookie Consent", + "description": "Cookie Consent is a free JavaScript plugin for alerting users about the use of cookies on your website. It is designed to help you quickly comply with cookie laws.", + "website": "https://www.osano.com/cookieconsent", + "license": [ + { + "spdx": "MIT", + "licenseURL": "https://github.com/osano/cookieconsent/blob/dev/LICENSE" + } + ], + "SDGs": [ + { + "SDGNumber": 17, + "evidenceURL": "https://www.engage.hoganlovells.com/knowledgeservices/news/cookie-consent-what-good-compliance-looks-like-according-to-the-ico" + } + ], + "type": [ + "software" + ], + "repositoryURL": "https://github.com/osano/cookieconsent", + "organizations": [ + { + "name": "Osano", + "website": "https://www.osano.com", + "org_type": "owner", + "contact_email": "help@osano.com" + } + ], + "stage": "nominee" +} From 8b984918d34277488e3c1032072b1bf9009126d9 Mon Sep 17 00:00:00 2001 From: Victor Date: Wed, 5 May 2021 11:41:20 -0600 Subject: [PATCH 4/9] BLD: add file nominees/intermine.json --- products/intermine.json | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 products/intermine.json diff --git a/products/intermine.json b/products/intermine.json new file mode 100644 index 0000000..0dcead6 --- /dev/null +++ b/products/intermine.json @@ -0,0 +1,30 @@ +{ + "name": "InterMine", + "description": "InterMine integrates biological data sources, making it easy to query and analyse data.", + "website": "http://intermine.org/", + "license": [ + { + "spdx": "LGPL-2.1", + "licenseURL": "https://github.com/intermine/intermine/blob/dev/LICENSE" + } + ], + "SDGs": [ + { + "SDGNumber": 9, + "evidenceURL": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086141/" + } + ], + "type": [ + "software" + ], + "repositoryURL": "https://github.com/intermine/intermine", + "organizations": [ + { + "name": "InterMine", + "website": "http://intermine.org/", + "org_type": "owner", + "contact_email": "info@intermine.org" + } + ], + "stage": "nominee" +} From f30d3dc4cc5e191cd477f9b807756aeefc879310 Mon Sep 17 00:00:00 2001 From: Victor Date: Wed, 5 May 2021 11:41:20 -0600 Subject: [PATCH 5/9] BLD: add file nominees/labkey-server.json --- products/labkey-server.json | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 products/labkey-server.json diff --git a/products/labkey-server.json b/products/labkey-server.json new file mode 100644 index 0000000..a944707 --- /dev/null +++ b/products/labkey-server.json @@ -0,0 +1,31 @@ +{ + "name": "LabKey Server", + "description": "LabKey Server is an open-source software platform designed to help research organizations integrate, analyze, and share complex biomedical data. Adaptable to varying research protocols, analysis tools, and data sharing requirements, LabKey Server couples the flexibility of a custom solution with enterprise-level scalability to support scientific workflows.", + "website": "https://www.labkey.com/products-services/labkey-server/", + "license": [ + { + "spdx": "Apache-2.0", + "licenseURL": "https://www.labkey.org/Documentation/wiki-page.view?name=openSourceProject" + } + ], + "SDGs": [ + { + "SDGNumber": 3, + "evidenceURL": "https://www.researchgate.net/publication/50347617_LabKey_Server_An_open_source_platform_for_scientific_data_integration_analysis_and_collaboration" + } + ], + "type": [ + "software", + "data" + ], + "repositoryURL": "https://github.com/LabKey/server", + "organizations": [ + { + "name": "LabKey", + "website": "https://www.labkey.com/", + "org_type": "owner", + "contact_email": "info@labkey.com" + } + ], + "stage": "nominee" +} From f4917bed29fecadd87251aa8cef93496944f1994 Mon Sep 17 00:00:00 2001 From: Victor Date: Wed, 5 May 2021 11:41:21 -0600 Subject: [PATCH 6/9] BLD: add file nominees/oncoscape.json --- products/oncoscape.json | 39 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 products/oncoscape.json diff --git a/products/oncoscape.json b/products/oncoscape.json new file mode 100644 index 0000000..7d1cac4 --- /dev/null +++ b/products/oncoscape.json @@ -0,0 +1,39 @@ +{ + "name": "Oncoscape", + "description": "Oncoscape is a data visualization platform that empowers researchers to discover novel patterns and relationships between clinical and molecular data. Through a suite of interoperable tools, Oncoscape offers a unique and intuitive approach to hypothesis refinement.", + "website": "https://oncoscape.sttrcancer.org/", + "license": [ + { + "spdx": "MIT", + "licenseURL": "https://github.com/FredHutch/Oncoscape/blob/develop/LICENSE" + } + ], + "SDGs": [ + { + "SDGNumber": 3, + "evidenceURL": "https://www.sttrcancer.org/en/biotools/oncoscape.html" + }, + { + "SDGNumber": 17, + "evidenceText": "In partnership with Github and Amazon Web Services, the Fred Hutch based team has developed a web-based portal equipped with rich data, powerful statistics and a simple interface to empower doctors, researchers, and scientists in investigating hypotheses, discovering novel patterns and associations, and ultimately expediting the process of translational research and precision medicine.", + "evidenceURL": "https://www.sttrcancer.org/en/biotools/oncoscape.html" + } + ], + "type": [ + "software" + ], + "repositoryURL": "https://github.com/FredHutch/Oncoscape", + "organizations": [ + { + "name": "Fred Hutchinson Cancer Research Center", + "website": "https://www.fredhutch.org/en/research/institutes-networks-ircs/seattle-translational-tumor-research.html", + "org_type": "owner" + }, + { + "name": "Seattle Translational Tumor Research", + "website": "https://www.sttrcancer.org/", + "org_type": "owner" + } + ], + "stage": "nominee" +} From 214e7b04d268cf9221fbc5d26b607eafca6e4ff8 Mon Sep 17 00:00:00 2001 From: Victor Date: Wed, 5 May 2021 11:41:21 -0600 Subject: [PATCH 7/9] BLD: add file nominees/orange.json --- products/orange.json | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 products/orange.json diff --git a/products/orange.json b/products/orange.json new file mode 100644 index 0000000..f5ad5fb --- /dev/null +++ b/products/orange.json @@ -0,0 +1,34 @@ +{ + "name": "Orange", + "description": "Orange is an open-source data visualization, machine learning and data mining toolkit. It features a visual programming front-end for explorative rapid qualitative data analysis and interactive data visualization.", + "website": "https://orangedatamining.com/", + "license": [ + { + "spdx": "GPL-3.0", + "licenseURL": "https://github.com/biolab/orange3/blob/master/LICENSE" + } + ], + "SDGs": [ + { + "SDGNumber": 3, + "evidenceURL": "https://core.ac.uk/download/pdf/231161571.pdf" + }, + { + "SDGNumber": 9, + "evidenceURL": "https://orangedatamining.com/home/interactive_data_visualization/" + } + ], + "type": [ + "software" + ], + "repositoryURL": "https://github.com/biolab/orange3", + "organizations": [ + { + "name": "University of Ljubljana, Faculty of Computer and Information Science, Bioinformatics Laboratory", + "website": "https://www.fri.uni-lj.si/en/laboratory/biolab", + "org_type": "owner", + "contact_email": "info@biolab.si" + } + ], + "stage": "nominee" +} From 0df62878bb752891e2d56ea42f89df828215d948 Mon Sep 17 00:00:00 2001 From: Victor Date: Wed, 5 May 2021 11:41:21 -0600 Subject: [PATCH 8/9] BLD: add file nominees/tensorflow.json --- products/tensorflow.json | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 products/tensorflow.json diff --git a/products/tensorflow.json b/products/tensorflow.json new file mode 100644 index 0000000..6fbffb6 --- /dev/null +++ b/products/tensorflow.json @@ -0,0 +1,33 @@ +{ + "name": "Tensorflow", + "description": "TensorFlow is an end-to-end open source platform for machine learning. It has a comprehensive, flexible ecosystem of tools, libraries and community resources that lets researchers push the state-of-the-art in ML and developers easily build and deploy ML powered applications.", + "website": "https://www.tensorflow.org/", + "license": [ + { + "spdx": "Apache-2.0", + "licenseURL": "https://github.com/tensorflow/tensorflow/blob/master/LICENSE" + } + ], + "SDGs": [ + { + "SDGNumber": 9, + "evidenceURL": "https://services.google.com/fh/files/misc/accelerating_social_good_with_artificial_intelligence_google_ai_impact_challenge.pdf" + }, + { + "SDGNumber": 17, + "evidenceURL": "https://services.google.com/fh/files/misc/accelerating_social_good_with_artificial_intelligence_google_ai_impact_challenge.pdf" + } + ], + "type": [ + "software" + ], + "repositoryURL": "https://github.com/tensorflow/tensorflow", + "organizations": [ + { + "name": "Google Brain", + "website": "https://research.google/teams/brain/", + "org_type": "owner" + } + ], + "stage": "nominee" +} From 8c1f2db32ed064810c41a199e356c11cdbdf6cbf Mon Sep 17 00:00:00 2001 From: Victor Date: Wed, 5 May 2021 11:41:22 -0600 Subject: [PATCH 9/9] BLD: add file nominees/the-chris-project.json --- products/the-chris-project.json | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 products/the-chris-project.json diff --git a/products/the-chris-project.json b/products/the-chris-project.json new file mode 100644 index 0000000..7ad51c5 --- /dev/null +++ b/products/the-chris-project.json @@ -0,0 +1,33 @@ +{ + "name": "The ChRIS Project", + "description": "ChRIS is a general-purpose, open source distributed data and computation platform.", + "website": "https://chrisproject.org/", + "license": [ + { + "spdx": "MIT", + "licenseURL": "https://github.com/FNNDSC/chrisapp/blob/master/LICENSE" + } + ], + "SDGs": [ + { + "SDGNumber": 9, + "evidenceURL": "https://www.bu.edu/rhcollab/projects/radiology/" + }, + { + "SDGNumber": 17, + "evidenceURL": "https://www.bu.edu/rhcollab/projects/radiology/" + } + ], + "type": [ + "software" + ], + "repositoryURL": "https://github.com/FNNDSC/chrisapp", + "organizations": [ + { + "name": "FNNDSC (Fetal-Neonatal Neuroimaging Developmental Science Center)", + "website": "http://fnndsc.babymri.org/", + "org_type": "owner" + } + ], + "stage": "nominee" +}