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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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<html xmlns="http://www.w3.org/1999/xhtml">
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<title>Course on Practical Neuroimaging in Python — Practical neuroimaging analysis</title>
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<div class="section" id="day-6-regression-and-the-general-linear-model">
<h1>Day 6: regression and the general linear model<a class="headerlink" href="#day-6-regression-and-the-general-linear-model" title="Permalink to this headline">¶</a></h1>
<p>4 / 3 / 2015</p>
<div class="section" id="reading">
<h2>Reading<a class="headerlink" href="#reading" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Introduction to the general linear model at:
<a class="reference external" href="http://perrin.dynevor.org/glm_intro.html">http://perrin.dynevor.org/glm_intro.html</a></li>
</ul>
</div>
<div class="section" id="day">
<h2>Day<a class="headerlink" href="#day" title="Permalink to this headline">¶</a></h2>
<ul>
<li><p class="first">git:</p>
<ul class="simple">
<li>remotes;</li>
<li>branches</li>
</ul>
</li>
<li><p class="first">testing</p>
</li>
<li><p class="first">regression in FMRI:</p>
<blockquote>
<div><ul class="simple">
<li>Load time course;</li>
<li>rebuild convolved regressor;</li>
<li>set up matrices;</li>
<li>run estimation;</li>
<li>visualize;</li>
<li>improving the model;</li>
<li>making t-statistics.</li>
</ul>
</div></blockquote>
</li>
</ul>
</div>
<div class="section" id="exercises">
<h2>Exercises<a class="headerlink" href="#exercises" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li><code class="docutils literal"><span class="pre">cd</span> <span class="pre">pna/pna2015</span></code></li>
<li><code class="docutils literal"><span class="pre">git</span> <span class="pre">pull</span></code></li>
<li><code class="docutils literal"><span class="pre">ipython</span> <span class="pre">notebook</span></code></li>
</ul>
<p>Navigate to <code class="docutils literal"><span class="pre">day6</span></code> directory in notebook.</p>
<p>We will start with the <code class="docutils literal"><span class="pre">working_with_utilities.ipynb</span></code> and then go on to
<code class="docutils literal"><span class="pre">regression.ipynb</span></code>.</p>
<p>There is a web page listing of the exercise files at
<a class="reference external" href="https://github.com/practical-neuroimaging/pna2015/tree/master/day6">https://github.com/practical-neuroimaging/pna2015/tree/master/day6</a></p>
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<h3><a href="index.html">Table Of Contents</a></h3>
<ul>
<li><a class="reference internal" href="#">Day 6: regression and the general linear model</a><ul>
<li><a class="reference internal" href="#reading">Reading</a></li>
<li><a class="reference internal" href="#day">Day</a></li>
<li><a class="reference internal" href="#exercises">Exercises</a></li>
</ul>
</li>
</ul>
<h4>Previous topic</h4>
<p class="topless"><a href="day5.html"
title="previous chapter">Day 5: convolution and correlation</a></p>
<h4>Next topic</h4>
<p class="topless"><a href="day7.html"
title="next chapter">Day 7: diagnostics using principal component analysis</a></p>
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<h3>Navigation</h3>
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<li class="right" style="margin-right: 10px">
<a href="genindex.html" title="General Index"
>index</a></li>
<li class="right" >
<a href="day7.html" title="Day 7: diagnostics using principal component analysis"
>next</a> |</li>
<li class="right" >
<a href="day5.html" title="Day 5: convolution and correlation"
>previous</a> |</li>
<big><big><big><li><a href="index.html">Home</a> | </li>
<li><a href="https://github.com/practical-neuroimaging/pna2015">Exercises</a> | </li>
<li><a href="https://calmail.berkeley.edu/manage/list/listinfo/practical_fmri@lists.berkeley.edu">Mailing list</a> | </li></big></big></big>
<li class="nav-item nav-item-1"><a href="schedule.html" >Schedule</a> »</li>
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