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<title>Course on Practical Neuroimaging in Python — Practical neuroimaging analysis</title>
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<div class="section" id="day-10-coordinate-systems-and-cross-modality-registration">
<h1>Day 10: coordinate systems and cross-modality registration<a class="headerlink" href="#day-10-coordinate-systems-and-cross-modality-registration" title="Permalink to this headline">¶</a></h1>
<p>5 / 1 / 2015</p>
<div class="section" id="reading">
<h2>Reading<a class="headerlink" href="#reading" title="Permalink to this headline">¶</a></h2>
<ul class="simple">
<li>Please read the tutorial on coordinate systems at:
<a class="reference external" href="http://nipy.org/nibabel/coordinate_systems.html">http://nipy.org/nibabel/coordinate_systems.html</a></li>
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<h2>Day<a class="headerlink" href="#day" title="Permalink to this headline">¶</a></h2>
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<li>Breaking down affines with inverses;</li>
<li>Reslicing EPI / anatomical using coordinate transforms;</li>
<li>Mutual information for cross-modality registration.</li>
</ul>
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<h2>Exercises<a class="headerlink" href="#exercises" title="Permalink to this headline">¶</a></h2>
<p>The usual instructions:</p>
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<li><code class="docutils literal"><span class="pre">cd</span> <span class="pre">pna/pna2015</span></code></li>
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<p>There is a web page listing of the exercise files at
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<li><a class="reference internal" href="#">Day 10: coordinate systems and cross-modality registration</a><ul>
<li><a class="reference internal" href="#reading">Reading</a></li>
<li><a class="reference internal" href="#day">Day</a></li>
<li><a class="reference internal" href="#exercises">Exercises</a></li>
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