pizzly splitcount 0

[igordot]

I ran flatten_json.py on the pizzly json file to get a table of fusions. I got hundreds of filtered fusions. Although some of my paircount are in the thousands (most are at 2), all splitcount are 0.

I also tried the test dataset and only 1 of 9 results had splitcount of 0.

What could this mean? Is there a description of pizzly output somewhere that may help me diagnose the issue? I had 2x75 reads with k=31, so I would expect get some split reads.

[medcelerate]

I have this same issue, furthermore our filtered output json is empty when we have a few large paircounts.