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Hi!
I am trying to quantify short kmers - so in this case 9mers.
I used the following config:
./BFCounter count temp_${file}.fastq -k 9 -n 300000 -t 10 -o ${file}_bfoutput
There are about 260000 possible 9mers so I set the -n to 300000.
Once I dump the binary output, I get
AAAAAAAAA 1006644076
So somehow it only added the AAAAAAAAA kmer but no others.
Any ideas what I'm doing wrong?
Thanks in advance for your support!
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