From 07657b64005dce5e53801ab6199388de56e52e19 Mon Sep 17 00:00:00 2001
From: Daniele Rapetti <5535617+Iximiel@users.noreply.github.com>
Date: Mon, 2 Feb 2026 08:56:59 +0100
Subject: [PATCH] _guessplumedroot now deletes the temporary file used to store
 the plumed output

In the mkstemp documentation there is the following sentence:
> Unlike TemporaryFile(), the user of mkstemp() is responsible for
> deleting the temporary file when done with it.

So I decided to use the higher level routine to avoid putting a new file
in the tmp dir every time I run some test (or the user tries to create
a new input with the InputBuilder)
---
 python/plumed.pyx | 30 +++++++++++++++---------------
 1 file changed, 15 insertions(+), 15 deletions(-)

diff --git a/python/plumed.pyx b/python/plumed.pyx
index 60626b897b..90956df1e2 100644
--- a/python/plumed.pyx
+++ b/python/plumed.pyx
@@ -708,21 +708,21 @@ def _guessplumedroot(kernel=None):
        dir from there.
     """
     try:
-        import tempfile
-        log=tempfile.mkstemp()[1]
-        with Plumed(kernel) as p:
-            p.cmd("setLogFile",log)
-            p.cmd("init")
-        i=0
-        root=""
-        with open(log) as fin:
-            for line in fin:
-                i=i+1
-                if re.match("PLUMED: Root: ",line):
-                    root=re.sub("PLUMED: Root: ","",line).rstrip("\n")
-                    break
-        if len(root)>0:
-            return root
+        from tempfile import NamedTemporaryFile
+        #mkstemp does not delete the created file, so we improvise:
+        with NamedTemporaryFile() as tmpfile:
+             log=tmpfile.name
+             with Plumed(kernel) as p:
+                 p.cmd("setLogFile",log)
+                 p.cmd("init")
+             root=None
+             with open(log) as fin:
+                 for line in fin:
+                     if re.match("PLUMED: Root: ",line):
+                         root=re.sub("PLUMED: Root: ","",line).rstrip("\n")
+                         break
+             if root and len(root)>0:
+                 return root
     except:
         pass
     # alternative solution, search for a plumed executable in the path