Under my understanding, at this time fslint does a double check for duplicate using md5sum then sha1sum to avoid md5sun collisions.
This double check is time consuming and in some case, depending of the amount and of the "value" of the files, I will prefer to have a faster single check mode with no sha1sum pass.
So I suggest to implement two modes: "Safe" the default one with double check and "Fast" with single check.