No default files Conda Install 2.6.3 to custom path

[LafontRapnouilTristan]

Hi Thanks for Picrust2!

I just installed picrust2 on a slurm cluster using:

conda create -p custom_path/venv_picrust2 -c bioconda -c conda-forge picrust2=2.6.3

I have picrust installed but can't find the default_files.

When running:

conda create -n venv_picrust2 -c bioconda -c conda-forge picrust2=2.6.3

Then running locate default_files find them.

IDK why it happens but custom path installation can be relevant for pipeline encapsulation and this could require a fix.
Thanks again for the amazing job on picrust2!!
Cheers!

[R-Wright-1]

Hi @LafontRapnouilTristan,

Thanks for the report. Can you clarify whether PICRUSt2 won't run or whether you are just unable to see the folder when you look for it outside of PICRUSt2? If there is an issue with running, then if you could open a new issue and fill in the bug report including every single command run then that would be great. This would seem to be an issue with PICRUSt2 not actually being installed as the defualt files should come with this.

Thanks,
Robyn

[github-actions]

This issue is stale because it has been open for 30 days with no activity.

[DininduSenanayake]

@LafontRapnouilTristan not sure whether this is still an issue on your install . Once installed with codna, default_files can be found in python site-packages. i.e. It is in /lib/python3.12/site-packages/picrust2/default_files/ .

[github-actions]

This issue is stale because it has been open for 30 days with no activity.