Is your feature request related to a problem? Please describe.
After scaffolding the ctg.fa, I obtained a ctg_HiC.fasta file with scaffolds, a ctg_HiC.assembly, and ctg.hic file. I could not trace back which contigs clustered together.
Describe the solution you'd like
I would appreciate it if you could provide a script which could convert .assembly file to .agp file.
Thanks for your great scripts!
best regards~