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modified etl_notebook. Db is now running on localhost
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src/ca_biositing/pipeline/ca_biositing/pipeline/utils/database_interaction.ipynb

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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.13.9"
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"version": "3.13.11"
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}
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},
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"nbformat": 4,
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{
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"cells": [
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "d5df752a",
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"ca_biositing.datamodels.schemas.generated.ca_biositing.Resource"
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]
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},
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"execution_count": 10,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"import pandas as pd\n",
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"import os\n",
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"import sys\n",
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"from sqlalchemy.orm import Session\n",
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"\n",
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"from ca_biositing.pipeline.utils.lookup_utils import replace_id_with_name_df\n",
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"from ca_biositing.datamodels.schemas.generated.ca_biositing import *\n",
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"\n"
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]
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "default",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 3
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.12.12"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 5
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}

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